Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F53 I1 R1
|
62 |
81.2 |
3465250 |
98.6% |
3416736 |
145.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
3,052,594 |
T→C |
F432L (TTC→CTC) |
PP_2664 → |
two‑component system sensor histidine kinase/response regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 3,052,594 | 0 | T | C | 100.0%
| 231.5
/ NA
| 63 | F432L (TTC→CTC) | PP_2664 | two‑component system sensor histidine kinase/response regulator |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (29/34); total (29/34) |
TCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTT > NC_002947_CJ‑RC/3052451‑3052736
|
tCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCt > 1:41621/1‑148 (MQ=255)
ccTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCCCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCAATGCCGAAGAACACCTGCAAGACATGCTCCTg > 3:301288/1‑148 (MQ=255)
tGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTg > 4:50671/1‑146 (MQ=255)
cgcAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGa < 1:199813/146‑1 (MQ=255)
aaCCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCa < 8:54130/148‑1 (MQ=255)
ccTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAg < 1:353740/148‑1 (MQ=255)
tGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCg > 4:161269/1‑148 (MQ=255)
gCTCAGCAATGCTAACCGCTACACCCCCAGCGGCCGCGTGGTGCTGGGCTGTCGGCGCCTGCGCCGTGGCGAGCGGAATGAAGTATGGGACAGCGGCAACCGCATAGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCgg > 2:47987/1‑148 (MQ=255)
cTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCgg < 2:361194/147‑1 (MQ=255)
cTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCgg < 5:164495/147‑1 (MQ=255)
cTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCgg < 3:102577/147‑1 (MQ=255)
tCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCgggg > 4:102443/1‑148 (MQ=255)
tCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCggg > 3:296913/1‑147 (MQ=255)
aGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCgggg < 5:98312/146‑1 (MQ=255)
aaTGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGGAAGACATGCGCCTGGAGTTGAAGCGGGGTGAtg > 5:40999/1‑148 (MQ=255)
cTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGc < 1:88033/147‑1 (MQ=255)
cTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCa < 7:376184/148‑1 (MQ=255)
tATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAg > 6:272549/1‑148 (MQ=255)
aTCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGAtgt < 6:177090/143‑1 (MQ=255)
aTCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGAtgt > 5:177090/1‑143 (MQ=255)
aTCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAgc > 4:303967/1‑148 (MQ=255)
ccGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAgcgc > 2:257166/1‑148 (MQ=255)
cTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTTAAGCGGGGTGATGTGCAGCGCCCg > 8:238855/1‑148 (MQ=255)
cTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCg > 6:354422/1‑148 (MQ=255)
cacCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGa < 1:120777/147‑1 (MQ=255)
cacCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGAc > 4:66939/1‑148 (MQ=255)
gggCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTg < 7:247930/148‑1 (MQ=255)
ggCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTgg < 6:253261/148‑1 (MQ=255)
cgTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTg < 7:6857/148‑1 (MQ=255)
gtgCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGt < 8:21161/147‑1 (MQ=255)
gtgCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTc > 2:138828/1‑148 (MQ=255)
cTGGGGTGTCGGCGCCTGCTCGGTGGCGTGCGGATTGAAGTATGTGACTGCGGCATCGGCATTGCCGAAGAACAACTGCAAGACATGCTCCTTGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTgg < 6:135857/148‑1 (MQ=255)
gtgtCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGa > 6:108081/1‑120 (MQ=255)
gtgtCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGa < 5:108081/120‑1 (MQ=255)
tgtCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTgg < 3:102443/148‑1 (MQ=255)
gcCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGt < 3:50671/148‑1 (MQ=255)
gcCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGt < 3:218582/148‑1 (MQ=255)
ccTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTg < 2:41621/148‑1 (MQ=255)
cTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTgg < 5:290113/148‑1 (MQ=255)
cTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTgg < 3:303967/148‑1 (MQ=255)
cTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTg > 6:183210/1‑147 (MQ=255)
cGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGcc < 3:178717/148‑1 (MQ=255)
tGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGAt > 3:48974/1‑83 (MQ=255)
tGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGAt < 4:48974/83‑1 (MQ=255)
tGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCgg > 1:68416/1‑148 (MQ=255)
gAAGTATGGGACAGCGGCATCGGCTTTGCCGAAGAACACCTGCAAGACTTGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTTGAGAAGATCGCCGGCATGCTc < 4:301288/147‑1 (MQ=255)
aGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGc > 4:253581/1‑148 (MQ=255)
tATGGGACAGCGGCATCGGCATTGCCGAAGAACACCAGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCa > 8:208595/1‑148 (MQ=255)
tGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCAc < 4:239664/147‑1 (MQ=255)
aCAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGAt > 5:274466/1‑148 (MQ=255)
cAGCGGCATCGGCATTGCCGAAGAACAACTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACAAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCGCCGGATc > 4:153682/1‑148 (MQ=255)
ggcatgggcatTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGTTGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGATGATCGCCGGCTTCCTCGGCCACCGGATCcgcg < 1:47987/148‑1 (MQ=255)
ggcatTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGtt < 5:354422/148‑1 (MQ=255)
catTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCa < 3:161269/148‑1 (MQ=255)
catTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCa > 5:396089/1‑148 (MQ=255)
catTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCa < 5:193484/148‑1 (MQ=255)
ccGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCt < 6:274466/148‑1 (MQ=255)
gaagaaCACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTgg < 3:66939/148‑1 (MQ=255)
gCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCg > 7:123408/1‑148 (MQ=255)
gCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCg > 8:268206/1‑148 (MQ=255)
cAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTc < 8:301374/146‑1 (MQ=255)
gACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGgtgt > 3:190686/1‑148 (MQ=255)
aCATGCTCCTGGAGTTCAAGCGCGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCAGCGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGCATCCGCGTGCGTTCATGGCTGGGCAAAGCCTCGGTGtt > 1:357601/1‑148 (MQ=255)
|
TCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTT > NC_002947_CJ‑RC/3052451‑3052736
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTC > NC_002947_CJ‑RC/3052449‑3052737
|
CATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTG > NB501016:282:H2V7GAFX2:1:11107:4349:5251/1‑151 (MQ=60)
ATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCCCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCAATGCCGAAGAACACCTGCAAGACATGCTCCTGG > NB501016:282:H2V7GAFX2:2:21205:8258:5293/1‑151 (MQ=60)
GCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGT < NB501016:282:H2V7GAFX2:1:11308:7722:16521/149‑1 (MQ=60)
ACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCG < NB501016:282:H2V7GAFX2:1:21210:9699:7861/151‑1 (MQ=60)
GCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGG < NB501016:282:H2V7GAFX2:3:11603:21536:17438/150‑1 (MQ=60)
GCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGG > NB501016:282:H2V7GAFX2:2:21204:19443:6405/1‑150 (MQ=60)
GCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGG < NB501016:282:H2V7GAFX2:2:11206:21762:5451/150‑1 (MQ=60)
CAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTG < NB501016:282:H2V7GAFX2:3:11505:11746:9854/149‑1 (MQ=60)
GCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGGAAGACATGCGCCTGGAGTTGAAGCGGGGTGATGT > NB501016:282:H2V7GAFX2:3:11407:10114:19784/1‑151 (MQ=60)
GCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGC < NB501016:282:H2V7GAFX2:4:21601:20739:9688/151‑1 (MQ=60)
GCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAG < NB501016:282:H2V7GAFX2:1:11202:10441:8404/150‑1 (MQ=60)
CTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGC > NB501016:282:H2V7GAFX2:3:11605:6759:15363/1‑147 (MQ=60)
ACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACC < NB501016:282:H2V7GAFX2:1:11207:18901:13515/150‑1 (MQ=60)
CGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGG < NB501016:282:H2V7GAFX2:4:21404:9074:19665/151‑1 (MQ=60)
GCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGG < NB501016:282:H2V7GAFX2:4:11402:8306:3034/151‑1 (MQ=60)
GGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACC < NB501016:282:H2V7GAFX2:3:11507:8838:1438/124‑1 (MQ=60)
GTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCA < NB501016:282:H2V7GAFX2:2:11206:1974:4961/151‑1 (MQ=60)
CGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGG < NB501016:282:H2V7GAFX2:2:11109:14608:12749/151‑1 (MQ=60)
CGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGG < NB501016:282:H2V7GAFX2:2:11312:10568:15908/151‑1 (MQ=60)
CCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAG < NB501016:282:H2V7GAFX2:2:21205:15320:13647/151‑1 (MQ=60)
CCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAG < NB501016:282:H2V7GAFX2:3:21501:18601:1915/151‑1 (MQ=60)
GCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGG < NB501016:282:H2V7GAFX2:2:11306:18505:12771/151‑1 (MQ=60)
CGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGC > NB501016:282:H2V7GAFX2:1:11111:25948:7030/1‑151 (MQ=60)
CGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGT > NB501016:282:H2V7GAFX2:2:11109:15308:7515/1‑87 (MQ=60)
GGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATC > NB501016:282:H2V7GAFX2:3:21410:15642:5245/1‑151 (MQ=60)
GGGCATGGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGTTGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGATGATCGCCGGCTTCCTCGGCCACCGGATCCGCGTG < NB501016:282:H2V7GAFX2:1:11108:1390:4399/151‑1 (MQ=60)
CGGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCA < NB501016:282:H2V7GAFX2:3:21511:1753:18327/151‑1 (MQ=60)
GGCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCAT > NB501016:282:H2V7GAFX2:3:21606:13964:7311/1‑151 (MQ=60)
GCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATG < NB501016:282:H2V7GAFX2:3:11608:5828:6497/151‑1 (MQ=60)
GCATTGCCGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATG < NB501016:282:H2V7GAFX2:2:11303:19167:17207/151‑1 (MQ=60)
CGAAGAACACCTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGC < NB501016:282:H2V7GAFX2:2:11112:12833:7719/151‑1 (MQ=60)
CTGCAAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGG > NB501016:282:H2V7GAFX2:4:11508:11380:10744/1‑151 (MQ=60)
AAGACATGCTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTT > NB501016:282:H2V7GAFX2:2:11308:14473:9895/1‑151 (MQ=60)
AGACATGCTCCTGGAGTTCAAGCGCGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCAGCGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGCATCCGCGTGCGTTCATGGCTGGGCAAAGCCTCGGTGTTC > NB501016:282:H2V7GAFX2:1:21210:6194:20211/1‑151 (MQ=60)
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CATCCTGCGCAACCTGCTCAGCAATGCTATCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTC > NC_002947_CJ‑RC/3052449‑3052737
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
