Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F81 I1 R1
|
61 |
77.8 |
3507706 |
98.1% |
3441059 |
138.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
4,888,750 |
Δ1 bp |
coding (106/1776 nt) |
gcl → |
glyoxylate carboligase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 4,888,749 | 0 | G | . | 98.8%
| 365.0
/ ‑2.0
| 81 | coding (105/1776 nt) | gcl | glyoxylate carboligase |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base . (39/41); total (39/42) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 |
AGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATG > NC_002947_CJ‑RC/4888604‑4888893
|
aGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGccc < 7:197717/149‑1 (MQ=255)
tataCAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGaaaaaa < 8:310851/148‑1 (MQ=255)
tataCAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAg > 1:414007/1‑149 (MQ=255)
cAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCgg < 2:369270/149‑1 (MQ=255)
cAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCg < 1:400748/148‑1 (MQ=255)
aaTTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGt > 8:268477/1‑149 (MQ=255)
aTTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAGAAAAGTCGGTg < 7:165308/149‑1 (MQ=255)
ttACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGt > 6:145187/1‑143 (MQ=255)
ttACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGt < 5:145187/143‑1 (MQ=255)
cAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCAt > 8:309778/1‑149 (MQ=255)
tCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCGGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATc < 6:328069/149‑1 (MQ=255)
gATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCAc < 6:129159/149‑1 (MQ=255)
aGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTcc < 5:434752/149‑1 (MQ=255)
aGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTcc < 2:3903/149‑1 (MQ=255)
cacaAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGt > 4:378645/1‑130 (MQ=255)
cacaAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGt < 3:378645/130‑1 (MQ=255)
acaAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTcc < 5:189259/145‑1 (MQ=255)
acaAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTcc > 6:189259/1‑145 (MQ=255)
aaaCCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCctcgctc > 5:392248/1‑149 (MQ=255)
aCCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGt < 7:309778/149‑1 (MQ=255)
ccATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGt > 1:142746/1‑124 (MQ=255)
ccATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGt < 2:142746/124‑1 (MQ=255)
cATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCa > 1:7067/1‑149 (MQ=255)
cATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCa > 1:51884/1‑149 (MQ=255)
aGCAAACTGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTTTTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGt < 2:93422/148‑1 (MQ=255)
aaaaTGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGaa < 6:392248/149‑1 (MQ=255)
aTGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGt > 6:34037/1‑149 (MQ=255)
gCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCct > 3:302512/1‑124 (MQ=255)
gCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCct < 4:302512/124‑1 (MQ=255)
cAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCg > 6:117546/1‑148 (MQ=255)
aTCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGc < 1:418422/142‑1 (MQ=255)
aTCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGc > 2:418422/1‑142 (MQ=255)
aTGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATgg > 7:455742/1‑149 (MQ=255)
aGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGcc > 5:299579/1‑147 (MQ=255)
gCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAg > 2:59870/1‑149 (MQ=255)
ccGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAgg < 3:272212/149‑1 (MQ=255)
cGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAggg < 2:414007/149‑1 (MQ=255)
cGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAggg < 1:212571/149‑1 (MQ=255)
cTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTa > 1:103227/1‑148 (MQ=255)
gTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACAcc > 1:391648/1‑149 (MQ=255)
tCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGt < 7:152912/85‑1 (MQ=255)
tCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGt > 8:152912/1‑85 (MQ=255)
tCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACAccc < 5:117546/149‑1 (MQ=255)
aTGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGt < 7:19517/119‑1 (MQ=255)
aTGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGt > 8:19517/1‑119 (MQ=255)
tGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCTGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCcgcg < 7:162983/149‑1 (MQ=255)
cgcCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCgcgc > 1:118309/1‑148 (MQ=255)
cGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAAc < 6:299579/149‑1 (MQ=255)
tGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAAccc > 5:214949/1‑149 (MQ=255)
gAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCg > 6:231012/1‑149 (MQ=255)
aaGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCgg < 2:391648/149‑1 (MQ=255)
gtgtAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGc > 5:50247/1‑148 (MQ=255)
aCCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGgt > 8:253638/1‑149 (MQ=255)
ccGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCgg < 1:28094/137‑1 (MQ=255)
ccGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCgg > 2:28094/1‑137 (MQ=255)
cgTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGgtgtgt < 2:51884/149‑1 (MQ=255)
cgTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGgtgtgt > 3:17636/1‑149 (MQ=255)
cgTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGgtgtgt < 7:268477/149‑1 (MQ=255)
ttCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGtgtgtg > 4:238082/1‑148 (MQ=255)
ggCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCAt < 1:59870/148‑1 (MQ=255)
ggCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATc < 5:34037/149‑1 (MQ=255)
ggCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATc > 7:341335/1‑149 (MQ=255)
gCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCg < 2:118309/149‑1 (MQ=255)
gCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCg < 8:455742/149‑1 (MQ=255)
aTCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCa > 7:316587/1‑149 (MQ=255)
tCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAgg < 3:123356/84‑1 (MQ=255)
tCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAgg > 4:123356/1‑84 (MQ=255)
ggCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCgg < 6:214949/149‑1 (MQ=255)
gCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGgt > 3:255206/1‑128 (MQ=255)
gCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGgt < 4:255206/128‑1 (MQ=255)
cATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCATCATCGGTGTGTGCATCGGCACTTCCGGCCCTGc < 2:103227/149‑1 (MQ=255)
cATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGc < 2:7067/149‑1 (MQ=255)
aTCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCg > 2:338023/1‑120 (MQ=255)
aTCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCg < 1:338023/120‑1 (MQ=255)
aTCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCgg < 2:272798/142‑1 (MQ=255)
aTCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCgg > 1:272798/1‑142 (MQ=255)
aTCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGcc > 8:44003/1‑149 (MQ=255)
aTCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGcc > 5:326243/1‑149 (MQ=255)
aCCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCa > 6:326974/1‑149 (MQ=255)
ttGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGAc < 5:231012/149‑1 (MQ=255)
tATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATg > 6:144190/1‑149 (MQ=255)
|
AGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATG > NC_002947_CJ‑RC/4888604‑4888893
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCAC > NC_002947_CJ‑RC/4888603‑4888898
|
AAGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCT < NB501016:282:H2V7GAFX2:4:11608:15379:14019/151‑1 (MQ=60)
GTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGT > NB501016:282:H2V7GAFX2:1:21309:7452:5266/1‑151 (MQ=60)
ACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGG < NB501016:282:H2V7GAFX2:1:21306:12211:19993/150‑1 (MQ=60)
AATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAGAAAAGTCGGTGG < NB501016:282:H2V7GAFX2:4:11603:12502:6302/151‑1 (MQ=60)
ATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTC < NB501016:282:H2V7GAFX2:3:11512:5032:7648/145‑1 (MQ=60)
GAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCT < NB501016:282:H2V7GAFX2:3:21611:23502:17037/151‑1 (MQ=60)
GCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTG < NB501016:282:H2V7GAFX2:2:21306:7529:11030/132‑1 (MQ=60)
CACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCT < NB501016:282:H2V7GAFX2:3:11607:22243:12815/147‑1 (MQ=60)
CAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCG > NB501016:282:H2V7GAFX2:3:21604:15082:16089/1‑151 (MQ=60)
AACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTC < NB501016:282:H2V7GAFX2:4:21501:9000:12321/151‑1 (MQ=60)
ACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTG > NB501016:282:H2V7GAFX2:1:11211:2351:19430/1‑126 (MQ=60)
CCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCAC > NB501016:282:H2V7GAFX2:1:11109:13394:6049/1‑151 (MQ=60)
CCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCAC > NB501016:282:H2V7GAFX2:1:11102:21798:4802/1‑151 (MQ=60)
AGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTC > NB501016:282:H2V7GAFX2:2:21205:8853:9895/1‑126 (MQ=60)
AATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCC < NB501016:282:H2V7GAFX2:1:21309:5256:19548/144‑1 (MQ=60)
GATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGC > NB501016:282:H2V7GAFX2:4:21612:3789:17631/1‑151 (MQ=60)
CAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCG > NB501016:282:H2V7GAFX2:3:21501:2688:14179/1‑149 (MQ=60)
GCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGG < NB501016:282:H2V7GAFX2:2:21110:3741:11152/151‑1 (MQ=60)
CCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGC < NB501016:282:H2V7GAFX2:1:11311:17932:16031/151‑1 (MQ=60)
TCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC > NB501016:282:H2V7GAFX2:1:11205:10640:10563/1‑150 (MQ=60)
GGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCC > NB501016:282:H2V7GAFX2:1:21305:14029:9021/1‑151 (MQ=60)
GTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCG < NB501016:282:H2V7GAFX2:3:11507:2047:19004/151‑1 (MQ=60)
GTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTG < NB501016:282:H2V7GAFX2:4:11601:8405:4646/87‑1 (MQ=60)
CATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTG < NB501016:282:H2V7GAFX2:4:11403:3721:20282/121‑1 (MQ=60)
ATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCTGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGC < NB501016:282:H2V7GAFX2:4:11602:9115:17838/151‑1 (MQ=60)
TGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTcaggacgccg > NB501016:282:H2V7GAFX2:3:11505:19525:5764/1‑140 (MQ=60)
GCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCC > NB501016:282:H2V7GAFX2:1:11207:10879:19577/1‑150 (MQ=60)
GTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCG > NB501016:282:H2V7GAFX2:3:11611:22797:15625/1‑151 (MQ=60)
GGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCA > NB501016:282:H2V7GAFX2:3:11409:12643:1797/1‑150 (MQ=60)
ACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGG < NB501016:282:H2V7GAFX2:1:11105:25042:10842/139‑1 (MQ=60)
GCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTG > NB501016:282:H2V7GAFX2:2:11104:23373:1453/1‑151 (MQ=60)
GCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTG < NB501016:282:H2V7GAFX2:4:21407:6794:11950/151‑1 (MQ=60)
GGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCG < NB501016:282:H2V7GAFX2:3:11406:10453:9147/151‑1 (MQ=60)
CGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCG > NB501016:282:H2V7GAFX2:4:21506:22730:10761/1‑151 (MQ=60)
CGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATC < NB501016:282:H2V7GAFX2:1:11110:12086:10868/150‑1 (MQ=60)
CATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCAC > NB501016:282:H2V7GAFX2:4:21502:23602:13746/1‑151 (MQ=60)
ATCCCGGGGGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGT < NB501016:282:H2V7GAFX2:2:11209:15023:13712/86‑1 (MQ=60)
GGCTGCCATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTG > NB501016:282:H2V7GAFX2:2:21107:6259:12669/1‑130 (MQ=60)
CATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCG > NB501016:282:H2V7GAFX2:3:21506:20638:4108/1‑151 (MQ=60)
CATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGC > NB501016:282:H2V7GAFX2:1:21109:16549:5208/1‑144 (MQ=60)
CATCAACCCGTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGG < NB501016:282:H2V7GAFX2:1:21207:11124:17568/122‑1 (MQ=60)
GTTGTATTC‑GCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACA < NB501016:282:H2V7GAFX2:3:21402:24788:9534/151‑1 (MQ=60)
CGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCAC < NB501016:282:H2V7GAFX2:4:21606:16918:10949/150‑1 (MQ=60)
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AAGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCAC > NC_002947_CJ‑RC/4888603‑4888898
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
