Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F23 I1 R1
|
59 |
87.9 |
3762788 |
98.7% |
3713871 |
145.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
4,888,761 |
(A)6→5 |
coding (117/1776 nt) |
gcl → |
glyoxylate carboligase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 4,888,756 | 0 | A | . | 97.5%
| 361.9
/ 3.3
| 81 | coding (112/1776 nt) | gcl | glyoxylate carboligase |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base . (42/37); total (43/38) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.69e-01 |
TATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCAC > NC_002947_CJ‑RC/4888613‑4888898
|
tataCAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGaaaa < 1:121478/147‑1 (MQ=255)
tataCAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGaaaa < 5:13379/147‑1 (MQ=255)
ataCAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGaaaaag > 1:119632/1‑147 (MQ=255)
taCAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGaaaaagt < 2:79305/148‑3 (MQ=255)
cAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGaaaaagtcg > 3:175767/1‑144 (MQ=255)
aaTTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCgg < 7:470689/148‑1 (MQ=255)
aTTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGt > 1:127874/1‑148 (MQ=255)
ttACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTg > 6:57145/1‑148 (MQ=255)
aaaaTCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCAt > 4:42735/1‑148 (MQ=255)
aaaTCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATc < 7:191724/148‑1 (MQ=255)
aTCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTACTGGTCATCCGCCGAGAAGGTGTAGAAACCGCGTTAGGCATCCCGGGGCCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGa > 5:87102/1‑148 (MQ=255)
tCGATGAGGCACAATCCTTGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTTAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGAt < 5:5653/148‑1 (MQ=255)
tCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGAt > 4:160864/1‑148 (MQ=255)
tGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACg > 4:359333/1‑148 (MQ=255)
ggCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTcc < 2:206172/148‑1 (MQ=255)
caAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGAt < 1:330535/137‑1 (MQ=255)
caAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGAt > 2:330535/1‑137 (MQ=255)
caAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGAATCGATCACGTCctcgc > 2:348027/1‑148 (MQ=255)
aaaCCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCctcgct < 1:111614/148‑1 (MQ=255)
aaaCCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCctcgct < 1:104915/148‑1 (MQ=255)
ccATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGt < 3:36899/148‑1 (MQ=255)
aGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGt > 8:335184/1‑148 (MQ=255)
cAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTTGGTGGCATCGATCACGTCCTCGCTCGTCACGTc > 1:433744/1‑147 (MQ=255)
aaTGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAg < 1:437709/148‑1 (MQ=255)
aaTCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCg > 2:350494/1‑147 (MQ=255)
aaTCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCg > 5:73443/1‑147 (MQ=255)
aTCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGca < 7:217284/148‑1 (MQ=255)
cGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGcaca > 5:406464/1‑148 (MQ=255)
gATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACAt < 3:160864/148‑1 (MQ=255)
cAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGc < 4:102433/147‑1 (MQ=255)
gCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGcc > 4:450798/1‑146 (MQ=255)
gCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGcc > 2:68758/1‑146 (MQ=255)
cGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAgg < 4:4161/148‑1 (MQ=255)
cGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAgg < 4:175767/148‑1 (MQ=255)
cGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAgg < 4:298786/148‑1 (MQ=255)
gTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAggg < 8:311815/148‑1 (MQ=255)
ttCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGc > 3:119679/1‑148 (MQ=255)
gTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTacac > 1:121104/1‑148 (MQ=255)
gTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTac < 7:291847/146‑1 (MQ=255)
tCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACAcc > 2:321886/1‑148 (MQ=255)
tGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCGCGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCcgc > 3:312143/1‑148 (MQ=255)
cgcCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCgcgc > 7:215865/1‑148 (MQ=255)
ccGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGcc > 4:86838/1‑147 (MQ=255)
tgtAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGc > 8:227790/1‑147 (MQ=255)
tgtAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCa < 1:350494/148‑1 (MQ=255)
gtAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCaa > 4:53876/1‑148 (MQ=255)
tAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGcaca > 6:380382/1‑113 (MQ=255)
tAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGcaca < 5:380382/113‑1 (MQ=255)
aGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACa > 2:43231/1‑148 (MQ=255)
aTACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATc > 7:251448/1‑148 (MQ=255)
aTACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATc > 4:330243/1‑148 (MQ=255)
ccGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCgg > 4:156117/1‑148 (MQ=255)
cgcgTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGgtg < 7:388961/148‑1 (MQ=255)
cgTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGgtgtg < 6:194809/148‑1 (MQ=255)
cgTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGgtgtg < 3:330243/148‑1 (MQ=255)
gTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGgtgtg < 3:156117/148‑1 (MQ=255)
gTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGgtgtgt > 5:370513/1‑148 (MQ=255)
ttCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGtgtgtg > 7:153056/1‑148 (MQ=255)
ttCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGtgtgtg > 2:338449/1‑148 (MQ=255)
aTCCCGGTGGCTGCCATCAAACCTTTGTAATCGGCGCTG‑AAAAAGTCGGTGGCATCGATCTCGTCCTCGCTCGTGACGTCGAAGGTGCCTCGCACATGGCCGATGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCTTCgg < 8:180748/148‑1 (MQ=255)
aTCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCgg < 1:348027/148‑1 (MQ=255)
aTCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCgg < 1:2096/148‑1 (MQ=255)
tCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGc < 3:86838/148‑1 (MQ=255)
cGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACt > 8:376498/1‑148 (MQ=255)
gggggCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTTGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACtt < 2:433744/148‑1 (MQ=255)
ggCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACTCGGGCAACATCGGTGTGTGCATCGGCACTTCCg < 8:67473/148‑1 (MQ=255)
cTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGc > 6:204045/1‑148 (MQ=255)
cTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCAGc < 8:9164/148‑1 (MQ=255)
tGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGcc > 8:425476/1‑148 (MQ=255)
gCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGACGGCTACACCCCCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGcc > 2:171650/1‑147 (MQ=255)
ccATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGccc < 5:57145/147‑1 (MQ=255)
ccATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCt > 4:355538/1‑148 (MQ=255)
aTCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGc < 7:250884/148‑1 (MQ=255)
aaaCCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGTCATCGATCACGTCCTCGCACGTCACTTCGAAGGTGCCTCGCACATGGCCGAGGGCTAAACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCAGGCCCTGcag > 3:343617/2‑146 (MQ=255)
cccGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCa > 6:47032/1‑148 (MQ=255)
cccGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCa > 7:269678/1‑148 (MQ=255)
cacGTTGTATTCGGCACTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATAGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCa > 6:87581/3‑148 (MQ=255)
gTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCg < 3:355538/148‑1 (MQ=255)
tATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACAt < 2:119632/148‑1 (MQ=255)
aTTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCg > 5:346517/1‑137 (MQ=255)
aTTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCg < 6:346517/137‑1 (MQ=255)
aTTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGCCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATg > 1:418081/1‑148 (MQ=255)
ttCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATgg < 5:47032/148‑1 (MQ=255)
cGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGt > 6:321636/1‑147 (MQ=255)
ggCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTc < 1:322435/147‑1 (MQ=255)
gCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCAc < 2:121104/148‑1 (MQ=255)
|
TATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCAC > NC_002947_CJ‑RC/4888613‑4888898
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACA > NC_002947_CJ‑RC/4888612‑4888909
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GTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAG < NB501016:282:H2V7GAFX2:1:11206:16635:10565/150‑1 (MQ=60)
GTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAG < NB501016:282:H2V7GAFX2:3:11403:5002:2072/150‑1 (MQ=60)
TACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGG > NB501016:282:H2V7GAFX2:2:11303:6993:18614/1‑151 (MQ=60)
CAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTG < NB501016:282:H2V7GAFX2:4:21610:14444:19951/151‑1 (MQ=60)
CAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTG > NB501016:282:H2V7GAFX2:1:11207:14776:10068/1‑151 (MQ=60)
AAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGA < NB501016:282:H2V7GAFX2:4:11605:4768:5643/151‑1 (MQ=60)
AAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTACTGGTCATCCGCCGAGAAGGTGTAGAAACCGCGTTAGGCATCCCGGGGCCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGAT > NB501016:282:H2V7GAFX2:3:11502:11754:9899/1‑151 (MQ=60)
ATCGATGAGGCACAATCCTTGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTTAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCA < NB501016:282:H2V7GAFX2:3:11401:22354:17700/151‑1 (MQ=60)
CACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCA < NB501016:282:H2V7GAFX2:1:21202:12275:8667/141‑1 (MQ=60)
CAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCG < NB501016:282:H2V7GAFX2:1:11204:1090:1338/151‑1 (MQ=60)
CAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCG < NB501016:282:H2V7GAFX2:1:11205:26814:1333/151‑1 (MQ=60)
ACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCC < NB501016:282:H2V7GAFX2:2:11106:3817:15772/151‑1 (MQ=60)
AGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTTGGTGGCATCGATCACGTCCTCGCTCGTCACGTCG > NB501016:282:H2V7GAFX2:1:21307:8675:5545/1‑150 (MQ=60)
AAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGT < NB501016:282:H2V7GAFX2:1:21307:4648:17268/151‑1 (MQ=60)
GCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGC > NB501016:282:H2V7GAFX2:3:11412:10076:9613/1‑150 (MQ=60)
AATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACA < NB501016:282:H2V7GAFX2:4:11609:7645:4549/151‑1 (MQ=60)
ATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACAT > NB501016:282:H2V7GAFX2:3:21602:6568:18121/1‑151 (MQ=60)
CGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGG < NB501016:282:H2V7GAFX2:2:11301:22189:14672/151‑1 (MQ=60)
CGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCT > NB501016:282:H2V7GAFX2:2:11207:2118:10335/1‑151 (MQ=60)
TGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACC > NB501016:282:H2V7GAFX2:1:11206:16888:9477/1‑151 (MQ=60)
GGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACAC < NB501016:282:H2V7GAFX2:4:21408:24539:5765/149‑1 (MQ=60)
CATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCGCGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCC > NB501016:282:H2V7GAFX2:2:21201:20077:10840/1‑151 (MQ=60)
TGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCC > NB501016:282:H2V7GAFX2:4:11608:12329:19643/1‑151 (MQ=60)
GTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAAC < NB501016:282:H2V7GAFX2:1:21205:10554:8500/151‑1 (MQ=60)
TGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATG < NB501016:282:H2V7GAFX2:3:21511:8406:1990/117‑1 (MQ=60)
AGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCG > NB501016:282:H2V7GAFX2:4:21402:24867:8504/1‑151 (MQ=60)
CCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTG < NB501016:282:H2V7GAFX2:4:21510:2998:8758/151‑1 (MQ=60)
GCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTG > NB501016:282:H2V7GAFX2:3:21509:1913:10703/1‑151 (MQ=60)
GCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTG < NB501016:282:H2V7GAFX2:2:21205:12874:14333/151‑1 (MQ=60)
CGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTG < NB501016:282:H2V7GAFX2:2:11212:21831:20263/151‑1 (MQ=60)
CGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGC > NB501016:282:H2V7GAFX2:4:11511:12367:6617/1‑151 (MQ=60)
CATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCA < NB501016:282:H2V7GAFX2:1:21205:25489:1271/151‑1 (MQ=60)
CATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCA < NB501016:282:H2V7GAFX2:1:11101:9555:7016/151‑1 (MQ=60)
ATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCAC < NB501016:282:H2V7GAFX2:2:11202:19862:10664/151‑1 (MQ=60)
GCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTG < NB501016:282:H2V7GAFX2:3:11409:9694:18126/150‑1 (MQ=60)
CATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCG < NB501016:282:H2V7GAFX2:4:21402:24962:6911/151‑1 (MQ=60)
ATAAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGTCATCGATCACGTCCTCGCACGTCACTTCGAAGGTGCCTCGCACATGGCCGAGGGCTAAACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCAGGCCCTGCAGG > NB501016:282:H2V7GAFX2:2:21207:6967:15383/1‑151 (MQ=60)
AACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCAC > NB501016:282:H2V7GAFX2:4:21405:8608:1995/1‑151 (MQ=60)
CGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGAC < NB501016:282:H2V7GAFX2:2:21209:8051:12420/151‑1 (MQ=60)
GTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGC > NB501016:282:H2V7GAFX2:3:21505:14363:14953/1‑141 (MQ=60)
GTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGCCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGG > NB501016:282:H2V7GAFX2:1:21304:23767:11528/1‑151 (MQ=60)
ATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTC < NB501016:282:H2V7GAFX2:3:11408:11631:6692/151‑1 (MQ=60)
CGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCAC < NB501016:282:H2V7GAFX2:1:21201:9113:3228/150‑1 (MQ=60)
CCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGC > NB501016:282:H2V7GAFX2:3:21404:26181:8874/1‑151 (MQ=60)
CCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGACGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGCTCACCGCCC > NB501016:282:H2V7GAFX2:1:11212:15440:18025/1‑151 (MQ=60)
tgAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTG > NB501016:282:H2V7GAFX2:4:21512:24260:4883/3‑151 (MQ=60)
AAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTAC < NB501016:282:H2V7GAFX2:4:21603:19602:19062/151‑1 (MQ=60)
AAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACA < NB501016:282:H2V7GAFX2:2:11107:2816:13886/151‑1 (MQ=60)
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GTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACA > NC_002947_CJ‑RC/4888612‑4888909
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
