Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F85 I1 R1
|
58 |
55.8 |
2477618 |
98.2% |
2433020 |
140.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
4,888,761 |
(A)6→5 |
coding (117/1776 nt) |
gcl → |
glyoxylate carboligase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 4,888,756 | 0 | A | . | 100.0%
| 229.8
/ NA
| 50 | coding (112/1776 nt) | gcl | glyoxylate carboligase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (22/28); total (22/28) |
ATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACC > NC_002947_CJ‑RC/4888614‑4888887
|
ataCAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGACGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGaaaaag > 3:102847/1‑147 (MQ=255)
taCAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGaaaaagtc > 7:267737/1‑146 (MQ=255)
taCAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGaaaaagtc < 6:78194/149‑4 (MQ=255)
cAATTACAAAATCGATGAGTCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCgg < 4:13447/149‑1 (MQ=255)
aaTTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGt < 4:145481/149‑1 (MQ=255)
cAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCAt < 7:38873/149‑1 (MQ=255)
aTCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGAt < 4:102847/149‑1 (MQ=255)
tCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGAt > 2:191982/1‑148 (MQ=255)
acaAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCg > 4:25436/1‑136 (MQ=255)
acaAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCg < 3:25436/136‑1 (MQ=255)
acaAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCctcgc > 2:74420/1‑149 (MQ=255)
aaaCCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCctcgctc < 5:227824/149‑1 (MQ=255)
cATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTc > 7:199550/1‑148 (MQ=255)
cATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTc < 8:199550/148‑1 (MQ=255)
cATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCa > 8:315393/1‑149 (MQ=255)
aaTGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAgg > 8:110370/1‑149 (MQ=255)
aaTGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAgg < 2:289187/149‑1 (MQ=255)
agCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTc < 7:313041/149‑1 (MQ=255)
aaTCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCctcgctc < 3:252180/127‑1 (MQ=255)
aaTCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCctcgctc > 4:252180/1‑127 (MQ=255)
aTGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCAATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATgg > 6:250944/1‑149 (MQ=255)
tGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGc < 5:199870/149‑1 (MQ=255)
gCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGTGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAg < 1:74420/149‑1 (MQ=255)
cGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAggg < 7:110370/149‑1 (MQ=255)
gTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTac < 5:65740/146‑1 (MQ=255)
cATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCcg > 8:170554/1‑149 (MQ=255)
aTGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGt > 8:106235/1‑119 (MQ=255)
aTGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGt < 7:106235/119‑1 (MQ=255)
gtAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGt > 1:215124/1‑104 (MQ=255)
gtAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGt < 2:215124/104‑1 (MQ=255)
aTACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCg < 5:244379/149‑1 (MQ=255)
ccGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAAc > 3:265351/1‑133 (MQ=255)
cgcgTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGgtgt > 7:225265/1‑149 (MQ=255)
cgTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGgtgtgt < 6:193055/149‑1 (MQ=255)
ttCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCTATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGc < 5:250944/149‑1 (MQ=255)
ggCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATc > 7:212325/1‑149 (MQ=255)
gCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATc < 1:16800/136‑1 (MQ=255)
gCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATc > 2:16800/1‑136 (MQ=255)
gCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCg > 3:181031/1‑149 (MQ=255)
ccGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCAc < 7:315393/148‑1 (MQ=255)
ccGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACt > 1:7119/1‑149 (MQ=255)
gCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGc > 6:21999/1‑149 (MQ=255)
ccATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAg < 6:79741/91‑1 (MQ=255)
ccATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAg > 5:79741/1‑91 (MQ=255)
tCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGgtgtgt > 5:164262/1‑125 (MQ=255)
tCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGgtgtgt < 6:164262/125‑1 (MQ=255)
tCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCg < 8:267737/149‑1 (MQ=255)
cccGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCAc < 4:181031/149‑1 (MQ=255)
ccGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCgg > 4:189557/1‑127 (MQ=255)
ccGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCgg < 3:189557/127‑1 (MQ=255)
ccGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCAcc < 8:179279/149‑1 (MQ=255)
cGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCAc > 6:36306/1‑147 (MQ=255)
cGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCAc < 5:36306/147‑1 (MQ=255)
|
ATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACC > NC_002947_CJ‑RC/4888614‑4888887
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTG > NC_002947_CJ‑RC/4888614‑4888905
|
ATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCG > NB501016:282:H2V7GAFX2:4:21512:14172:9819/1‑151 (MQ=60)
ACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATC < NB501016:282:H2V7GAFX2:4:11409:6006:10088/151‑1 (MQ=60)
CACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGA < NB501016:282:H2V7GAFX2:2:11107:7682:3885/138‑1 (MQ=60)
CAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCG < NB501016:282:H2V7GAFX2:3:21505:4817:9903/151‑1 (MQ=60)
CCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCA > NB501016:282:H2V7GAFX2:4:21409:24737:13168/1‑150 (MQ=60)
ccggccggtacggcttcctgcatcagctgaccgcggcgctcgaccaggcgaacggcatctttcaggcGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCT > NB501016:282:H2V7GAFX2:2:21102:14689:7589/68‑150 (MQ=60)
GAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCG < NB501016:282:H2V7GAFX2:4:21610:16547:18010/151‑1 (MQ=60)
CAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCG < NB501016:282:H2V7GAFX2:2:21302:4728:17202/129‑1 (MQ=60)
ATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCC < NB501016:282:H2V7GAFX2:3:21410:24372:19521/151‑1 (MQ=60)
AGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGTGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGG < NB501016:282:H2V7GAFX2:1:11205:10551:16998/151‑1 (MQ=60)
CCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGC < NB501016:282:H2V7GAFX2:4:11601:22938:13779/151‑1 (MQ=60)
GGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA < NB501016:282:H2V7GAFX2:3:11504:26703:3037/148‑1 (MQ=60)
CATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTG < NB501016:282:H2V7GAFX2:4:11512:1980:14592/121‑1 (MQ=60)
TGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTG > NB501016:282:H2V7GAFX2:1:21202:8497:10159/1‑106 (MQ=60)
GATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGG < NB501016:282:H2V7GAFX2:3:21509:2971:8535/151‑1 (MQ=60)
ACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACC > NB501016:282:H2V7GAFX2:2:21305:22428:19845/1‑135 (MQ=60)
CCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTG > NB501016:282:H2V7GAFX2:4:21503:16436:1992/1‑151 (MQ=60)
GTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCTATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCA < NB501016:282:H2V7GAFX2:3:21510:17718:18908/151‑1 (MQ=60)
CGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCG > NB501016:282:H2V7GAFX2:4:21412:23183:5117/1‑151 (MQ=60)
GGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGG > NB501016:282:H2V7GAFX2:2:21107:22294:15691/1‑151 (MQ=60)
GGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCG < NB501016:282:H2V7GAFX2:1:11104:5678:17167/138‑1 (MQ=60)
CCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTT > NB501016:282:H2V7GAFX2:1:11102:24845:13522/1‑151 (MQ=60)
CCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACT < NB501016:282:H2V7GAFX2:4:21611:6677:9745/150‑1 (MQ=60)
GCCATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGG > NB501016:282:H2V7GAFX2:3:11507:7021:7064/1‑93 (MQ=60)
ATCAACCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTG > NB501016:282:H2V7GAFX2:3:21402:24172:14770/1‑127 (MQ=60)
CCCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGC < NB501016:282:H2V7GAFX2:2:21109:5059:17273/129‑1 (MQ=60)
CCGTTGTATTCGGCCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACC < NB501016:282:H2V7GAFX2:3:11409:25834:7324/149‑1 (MQ=60)
CCCTG‑AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCC < NB501016:282:H2V7GAFX2:3:21505:15639:3660/67‑1 (MQ=60)
tgAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTG > NB501016:282:H2V7GAFX2:3:21405:18935:4994/3‑151 (MQ=60)
tgAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTG > NB501016:282:H2V7GAFX2:3:11604:19797:7142/3‑151 (MQ=60)
|
ATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTG > NC_002947_CJ‑RC/4888614‑4888905
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
