Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F85 I1 R1
|
58 |
55.8 |
2477618 |
98.2% |
2433020 |
140.5 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCTGGC > NC_002947_CJ‑RC/5512566‑5512861
|
GGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCGGGGCG > NB501016:282:H2V7GAFX2:4:11403:23082:19889/1‑151 (MQ=60)
AGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCCGGCCGGC > NB501016:282:H2V7GAFX2:1:21302:9764:3856/1‑151 (MQ=60)
CACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCT > NB501016:282:H2V7GAFX2:2:11208:6522:17998/1‑145 (MQ=60)
ATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCCGCCGGCGCGAAGGCTGGGgcgc > NB501016:282:H2V7GAFX2:2:11210:10273:20083/1‑147 (MQ=60)
ACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCGGGCCGGCCggcgcgcagccgcggcagcaccac > NB501016:282:H2V7GAFX2:2:11104:5035:6866/1‑127 (MQ=60)
aaaccaccaaacaattcgtgactgtatttcatccgtgtcctcatcctatctacccaccccagcgaggcctaattcttacccccccccaccCCCGCCGCGCCGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGC < NB501016:282:H2V7GAFX2:3:21506:24815:19503/61‑1 (MQ=60)
CCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGCCAACCCACGCCAGCGAGGGCTAATTCTTTCACCCCCCCACGCCCGCCGAGCCGGCCGGCCGGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCC < NB501016:282:H2V7GAFX2:3:11606:2600:11897/151‑1 (MQ=60)
GCTCAGACTCCTGCTCACCCTCCTGCTGCAAACCCCCCTCCCACCCCACGCCAGCGAGGGCTAATTCTTTCACCCCGCCACCCCCGCCGAGCCGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCT < NB501016:282:H2V7GAFX2:3:11405:4656:7951/150‑1 (MQ=60)
cacacccctgcacaccctcctgctccaaatccccctcccaccccccccccgcgtgggattattctttctcccccccaccccccccgtGCAGGCCGGCCTCCGCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGG < NB501016:282:H2V7GAFX2:1:11302:24759:11142/62‑1 (MQ=60)
CTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCCGGCCGGCCcgcgccaaggcgggggaccacaacccccaaccgcgcgccagccccggcggggtaaac > NB501016:282:H2V7GAFX2:4:21604:8500:4146/1‑94 (MQ=60)
CTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCCGGCCGGCCGGCGCGAAGGCgggggggccccaccccaagccgcgccccggccgcggcggggcaac > NB501016:282:H2V7GAFX2:3:21401:9951:6547/1‑105 (MQ=60)
CTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCGGCGCGAAGGCTGGGCcgcccccacccaagccgcccgccagccgcggcgggaaaacc > NB501016:282:H2V7GAFX2:4:11510:8915:18055/1‑110 (MQ=60)
ccctcccccccctcctgctcctaacccccctccccacccccgcccgcgcgggctaattctttccccccccccccCCCGCCGCGCCGGCCGGCCGGCGCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCT < NB501016:282:H2V7GAFX2:4:21511:17549:4816/77‑1 (MQ=60)
CCCTCCTGCTGCTAATCCCCCTGCCAACCCCCGCCAGCGAGGGCTAATTCTTTCACACCGCCACGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGAT < NB501016:282:H2V7GAFX2:3:21606:25377:9433/113‑1 (MQ=60)
GCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCCGGCCGGCCGGCGCGAAGGCTGGGCGGCCCAACCCCCAGCCGCGCGCCGGCCGCGGCGGGAAAACCAGCGCCccggccgccgcgcc > NB501016:282:H2V7GAFX2:1:11107:5512:11010/1‑137 (MQ=60)
ccccacccacCCCACGCCCGCGAGGGCGAATTCTTTCCCCCCCCCCCGCCCGCCGCGCCGGCCGGCCGGCGCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATG < NB501016:282:H2V7GAFX2:3:21602:22535:8763/141‑1 (MQ=60)
CCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCGGCACGAAGGCTGGGCAGCCCAACCCGCTGCCGCcccccggccccaccgggaaaacatgcgccaagcccccatcgcccccaa > NB501016:282:H2V7GAFX2:4:11406:6902:17174/1‑101 (MQ=60)
gtctaattctttgtcccccccacGCCCGCCGACCAGCCCGGCCCGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACA < NB501016:282:H2V7GAFX2:4:21406:2739:8644/128‑1 (MQ=60)
tccatcccccccccccGCCCGCCGAGCCGGCCGGCCGGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCC < NB501016:282:H2V7GAFX2:3:21411:19639:19101/134‑1 (MQ=60)
GCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCTG > NB501016:282:H2V7GAFX2:3:11402:3934:7685/1‑151 (MQ=60)
AGGCCGGACTGCTCGAAGGCTGGGCAGCACAACCCGATGACGCGCGCCTGACGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGAGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCTGGC > NB501016:282:H2V7GAFX2:2:11109:25831:15388/1‑151 (MQ=60)
|
GGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCGACAACGCCCTGGC > NC_002947_CJ‑RC/5512566‑5512861
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
