Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F11 I1 R1
|
56 |
91.5 |
3907174 |
98.4% |
3844659 |
146.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_002947_CJ‑RC |
4,635,692 |
Δ424 bp |
|
[uvrY]–[PP_4100] |
[uvrY], [PP_4100] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_002947_CJ‑RC |
4635692 |
4636115 |
424 |
77 [0] |
[0] 76 |
[uvrY]–[PP_4100] |
[uvrY],[PP_4100] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_002947_CJ‑RC |
= 4635691 | 0 (0.000) | 74 (0.860) |
62/276 |
0.4 |
100% |
coding (172/639 nt) |
uvrY |
BarA/UvrY two‑componenent system response regulator |
| ? | NC_002947_CJ‑RC |
4636116 = |
0 (0.000) | coding (200/390 nt) |
PP_4100 |
Cro/CI family transcriptional regulator |
GATK/CNVnator alignment
N/A
