Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F12 I1 R1 58 76.7 3263832 98.3% 3208346 146.5

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCGGAGCGGCACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACGCAATGTCAGTCCCCATGCTCGTCGCCGGAGCTGCGGTCTTCCTCCTCGGCCGCTGGGTCCGAAGCGACAATCACCCCGATCGCAAGTCGGCAGAAAGTCATTCGCTCGCCCGCAAGTAGTGTGGATCGGC  >  NC_002947_CJ‑RC/4769193‑4769465
                                                                                                                                              |                                                                                                                                  
GTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCGGAGCGGCACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACACAATGTC                                                                                                                             >  NB501016:282:H2V7GAFX2:2:11303:23174:10009/1‑150 (MQ=60)
  CGGCGGTGTTCTATCCGACACCGATGCGGTCCTCCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCGGAGCGGCACTCTGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACACAATGTCAG                                                                                                                           <  NB501016:282:H2V7GAFX2:1:11308:4711:15091/150‑1 (MQ=60)
   CGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCGGAGCGGCACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACACAATGTCAGTC                                                                                                                         <  NB501016:282:H2V7GAFX2:4:21512:10078:13975/151‑1 (MQ=60)
   CGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCGGAGCGGCACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACACAATGTCAGTC                                                                                                                         >  NB501016:282:H2V7GAFX2:1:21110:9195:14816/1‑151 (MQ=60)
         GTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCGGAGCGGCACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACGCAATGTCAGTCCCCATG                                                                                                                   >  NB501016:282:H2V7GAFX2:1:11206:14887:13879/1‑151 (MQ=60)
            CTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCGGAGCGGCACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACACAATGTCAGTCCCCATGCT                                                                                                                 >  NB501016:282:H2V7GAFX2:4:11603:21710:1107/1‑150 (MQ=60)
              ATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCGGAGCGGCACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACGCAATGTCAGTCCCCATGCTC                                                                                                                <  NB501016:282:H2V7GAFX2:2:11106:16629:11800/149‑1 (MQ=60)
                CCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCGGAGCGGCACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACACAATGTCAGTCCCCATGCTCGTCG                                                                                                            <  NB501016:282:H2V7GAFX2:1:21311:1491:2487/151‑1 (MQ=60)
                   ACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCGGAGCGGCACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACGCAATGTCAGTCCCCATGCTCGTCGCCG                                                                                                         >  NB501016:282:H2V7GAFX2:1:11206:16010:8501/1‑151 (MQ=60)
                                 CACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCGGAGCGGCACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACGCAATGTCAGTCCCCATGCTCGTCGCCGGAGCTGCGGTCTTC                                                                                           >  NB501016:282:H2V7GAFX2:3:21411:9518:17309/1‑151 (MQ=60)
                                 CACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCGGAGCGGCACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACACAATGTCAGTCCCCATGCTCGTCGCCGGAGCTGCGGTCTTC                                                                                           >  NB501016:282:H2V7GAFX2:4:11510:6078:10369/1‑151 (MQ=60)
                                   CCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCGGAGCGGCACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACACAATGTCAGTCCCCATGCTCGTCGCCGGAGCTGCGGTCTTCCT                                                                                         >  NB501016:282:H2V7GAFX2:2:21312:5444:14025/1‑151 (MQ=60)
                                                            TGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCGGAGCGGCACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACGCAATGTCAGTCCCCATGCTCGTCGCCGGAGCTGCGGTCTTCCTCCTCGGCCGCTGGGTCCGAAGCGAC                                                                >  NB501016:282:H2V7GAFX2:2:11212:9449:4549/1‑151 (MQ=60)
                                                              GCCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCGGAGCGGCACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACGCAATGTCAGTCCCCATGCTCGTCGCCGGAGCTGCGGTCTTCCTCCTCGGCCGCTGGGTCCGAAGCGACAA                                                              <  NB501016:282:H2V7GAFX2:1:21104:18896:20207/151‑1 (MQ=60)
                                                               CCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCGGAGCGGCACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACACAATGTCAGTCCCCATGCTCGTCGCCGGAGCTGCGGTCTTCCTCCTCGGCCGCTGGGTCCGAAGCGACAAT                                                             >  NB501016:282:H2V7GAFX2:3:11504:2235:7650/1‑151 (MQ=60)
                                                                CGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCGGAGCGGCACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACACAATGTCAGTCCCCAAGCTCGTCGCCGGAGCTGCGGTCTTCCTCCTCGGCCGCTGGGTCCGAAGCGACAATC                                                            >  NB501016:282:H2V7GAFX2:4:21407:6793:6246/1‑151 (MQ=60)
                                                                     CGGCGGCATCGTCGGGCCGATCGCGGTCGGAGCGGCACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACGCAATGTCAGTCCCCATGCTCGTCGCCGGAGCTGCGGTCTTCCTCCTCGGCCGCTGGGTCCGAAGCGACAATCACCCC                                                       <  NB501016:282:H2V7GAFX2:2:21211:10143:2571/151‑1 (MQ=60)
                                                                                 CGGGCCGATCGCGGTCGGAGCGGCACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACGCAATGTCAGTCCCCATGCTCGTCGCCGGAGCTGCGGTCTTCCTCCTCGGCCGCTGGGTCCGAAGCGACAATCACCCCGATCGCAAGTCG                                           >  NB501016:282:H2V7GAFX2:2:11303:25662:10509/1‑151 (MQ=60)
                                                                                                        CACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACGCAATGTCAGTCCCCATGCTCGTCGCCGGAGCTGCGGTCTTCCTCCTCGGCCGCTGGGTCCGAAGCGACAATCACCCCGATCGCAAGTCGGCAGAAAGTCATTCGCTCGCCCG                    >  NB501016:282:H2V7GAFX2:1:21205:14268:18211/1‑151 (MQ=60)
                                                                                                             GGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACACAATGTCAGTCCCCATGCTCGTCGCCGGAGCTGCGGTCTTCCTCCTCGGCCGCTGGGTCCGAAGCGACAATCACCCCGATCGCAAGTCGGCAGAAAGTCATTCGCTCGCCCGCAAGT               >  NB501016:282:H2V7GAFX2:3:11602:16665:13264/1‑151 (MQ=60)
                                                                                                             GGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACACAATGTCAGTCCCCATGCTCGTCGCCGGAGCTGCGGTCTTCCTCCTCGGCCGCTGGGTCCGAAGCGACAATCACCCCGATCGCAAGTCGGCAGAAAGTCATTCGCTCGCCCGCAAGT               >  NB501016:282:H2V7GAFX2:2:21304:17524:14992/1‑151 (MQ=60)
                                                                                                               CATGGGCTGGTCCGCCAGTGCAGTCTTCTACGCAATGTCAGTCCCCATGCTCGTCGCCGGAGCTGCGGTCTTCCTCCTCGGCCGCTGGGTCCGAAGCGACAATCACCCCGATCGCAAGTCGGCAGAAAGTCATTCGCTCGCCCGCAAGTAG             <  NB501016:282:H2V7GAFX2:4:21612:23968:11321/151‑1 (MQ=60)
                                                                                                                   GGCTGGTCCGCCAGTGCAGTCTTCTACACAATGTCAGTCCCCATGCTCGTCGCCGGAGCTGCGGTCTTCCTCCTCGGCCGCTGGGTCCGAAGCGACAATCACCCCGATCGCAAGTCGGCAGAAAGTCATTCGCTCGCCCGCAAGTAGTGTG         <  NB501016:282:H2V7GAFX2:2:11112:16240:5777/151‑1 (MQ=60)
                                                                                                                           CGCCAGTGCAGTCTTCTACGCAATGTCAGTCCCCATGCTCGTCGCCGGAGCTGCGGTCTTCCTCCTCGGCCGCTGGGTCCGAAGCGACAATCACCCCGATCGCAAGTCGGCAGAAAGTCATTCGCTCGCCCGCAAGTAGTGTGGATCGGC  >  NB501016:282:H2V7GAFX2:1:21110:14206:8209/1‑150 (MQ=60)
                                                                                                                                              |                                                                                                                                  
GTCCGCGGTGTTCTATCCGACACCGATGCGGTCCACCGGGGTTGGATGGGCGTTGGGTGTTGGCCGCCTCGGCGGCATCGTCGGGCCGATCGCGGTCGGAGCGGCACTCGGCATGGGCTGGTCCGCCAGTGCAGTCTTCTACGCAATGTCAGTCCCCATGCTCGTCGCCGGAGCTGCGGTCTTCCTCCTCGGCCGCTGGGTCCGAAGCGACAATCACCCCGATCGCAAGTCGGCAGAAAGTCATTCGCTCGCCCGCAAGTAGTGTGGATCGGC  >  NC_002947_CJ‑RC/4769193‑4769465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑