Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F11 I1 R1
|
56 |
91.5 |
3907174 |
98.4% |
3844659 |
146.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
4,888,612 |
G→A |
intergenic (‑225/‑33) |
PP_4296 ← / → gcl |
hypothetical protein/glyoxylate carboligase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 4,888,612 | 0 | G | A | 99.1%
| 398.8
/ NA
| 115 | intergenic (‑225/‑33) | PP_4296/gcl | hypothetical protein/glyoxylate carboligase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (52/62); minor base T (0/1); total (52/63) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 117 total aligned reads displayed.
TTTTTGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG > NC_002947_CJ‑RC/4888467‑4888755
|
tttttGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTtata < 7:162292/148‑1 (MQ=255)
gTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCATGAATACACTCTGTCGCAAAGCAAGTTATATACaa < 8:325327/148‑1 (MQ=255)
taCAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATAc < 4:6395/143‑1 (MQ=255)
taCAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATAc > 3:6395/1‑143 (MQ=255)
tatTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAAt < 4:447322/149‑1 (MQ=255)
tatTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAAt < 2:98929/149‑1 (MQ=255)
tttGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCTCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATc < 6:8675/147‑1 (MQ=255)
gAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATg < 7:61337/148‑1 (MQ=255)
gAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATCGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGAt > 4:234194/1‑147 (MQ=255)
aaaCGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGa < 3:237067/148‑1 (MQ=255)
aaaCGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGa < 2:117103/148‑1 (MQ=255)
aaCGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAg < 8:235794/148‑1 (MQ=255)
aaCGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGACAGCTTAGCCGATGAAAACCCATAGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAgg > 1:180110/1‑149 (MQ=255)
aCGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGc < 2:433458/149‑1 (MQ=255)
aCGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGc < 3:133720/149‑1 (MQ=255)
cGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGca < 4:21311/149‑1 (MQ=255)
gATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACCCTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGca > 1:58276/1‑148 (MQ=255)
gATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGc > 6:251564/1‑147 (MQ=255)
aTGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCa > 1:264562/1‑149 (MQ=255)
tGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCAt < 3:198129/149‑1 (MQ=255)
cGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCAt > 7:406904/1‑147 (MQ=255)
cGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGa < 2:320218/149‑1 (MQ=255)
cGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGa < 4:251445/149‑1 (MQ=255)
ggCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCa < 5:409240/148‑1 (MQ=255)
gcAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCATCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGAGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCaaaa > 5:229967/1‑148 (MQ=255)
gcAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCaaaa > 6:418051/1‑148 (MQ=255)
gcAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCaaaa > 5:411169/1‑148 (MQ=255)
gcAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCaaaa > 5:440336/1‑148 (MQ=255)
gcAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAAt > 2:399246/1‑149 (MQ=255)
gcAAACCTACGTTTTCACGGGCGCTCTGACGAAAGCCAGATTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAAt < 3:111263/149‑1 (MQ=255)
aaaCCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCaaaa > 5:179381/1‑146 (MQ=255)
aaaCCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATga < 3:33320/149‑1 (MQ=255)
aaCCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAGAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATgag < 3:236903/149‑1 (MQ=255)
aCCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATgaga < 7:317681/149‑1 (MQ=255)
ccTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATgaga < 6:123466/148‑1 (MQ=255)
ccTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATgaga < 5:164500/148‑1 (MQ=255)
cTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGc > 3:94284/1‑125 (MQ=255)
cTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGc < 4:94284/125‑1 (MQ=255)
cTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGagag > 7:468242/1‑148 (MQ=255)
tCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGagag > 6:188686/1‑147 (MQ=255)
tCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGc > 2:243749/1‑148 (MQ=255)
ccGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCa > 6:196313/1‑148 (MQ=255)
cACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATg < 2:346934/148‑1 (MQ=255)
cGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAg < 1:282214/149‑1 (MQ=255)
gggCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGc < 7:306408/149‑1 (MQ=255)
gggCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGc < 2:130032/149‑1 (MQ=255)
tGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCt < 3:381272/147‑1 (MQ=255)
aCGAAAGCCTGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGGAAAGCATGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTgg < 7:168874/147‑1 (MQ=255)
gAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATgaga < 4:152061/123‑1 (MQ=255)
gAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATgaga > 3:152061/1‑123 (MQ=255)
gAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATgag > 5:144857/1‑122 (MQ=255)
aGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATgcg < 2:264562/149‑1 (MQ=255)
ccAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCGGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGcc > 8:390300/1‑149 (MQ=255)
ccAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGcc > 2:388645/1‑149 (MQ=255)
cAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCg < 3:311417/149‑1 (MQ=255)
cTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTg > 3:404473/1‑148 (MQ=255)
aGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAg < 1:239218/148‑1 (MQ=255)
gCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAg < 5:207694/147‑1 (MQ=255)
ccGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGgt < 6:262734/148‑1 (MQ=255)
cGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGgtgt < 4:404473/149‑1 (MQ=255)
cGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGgtgt < 1:399246/149‑1 (MQ=255)
aaaCCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATAc > 8:289660/1‑149 (MQ=255)
aCCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACcg > 3:332337/1‑149 (MQ=255)
ttGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTc > 3:199705/1‑149 (MQ=255)
ccTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGc < 5:418051/148‑1 (MQ=255)
ccTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCa < 3:161594/149‑1 (MQ=255)
cTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCAt > 8:397878/1‑149 (MQ=255)
tAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTGCTGGTCATGAGCCGTGAAGGTGTAGATACCGCGTACGGCCTc > 1:284947/1‑149 (MQ=255)
aaGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATcc > 4:11059/1‑149 (MQ=255)
ccGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCgg > 7:164410/1‑149 (MQ=255)
ccGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGGCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCgg > 8:111739/1‑149 (MQ=255)
gTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCgggg < 7:302294/149‑1 (MQ=255)
tCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCggggg < 2:125618/149‑1 (MQ=255)
tCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCggggg > 3:241000/1‑149 (MQ=255)
tCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAAGCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCgggg < 6:456461/148‑1 (MQ=255)
cGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGc < 6:179381/148‑1 (MQ=255)
gTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCa < 8:13337/149‑1 (MQ=255)
gAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCAt < 6:229967/148‑1 (MQ=255)
aaTACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATc < 7:351225/148‑1 (MQ=255)
ttACAGTCTGTCGCTAAGCTAGTTTTATAGAATTACAATATCGATGAGGCACAAACCTTGAGCAATATGTGATCAATCGTTGCTGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATAGCGCGTTGGGCATCCCGGGGGCTGCCTTCaa < 4:30593/148‑1 (MQ=255)
aTACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCaa > 2:346433/1‑149 (MQ=255)
acacTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAAc < 6:395298/148‑1 (MQ=255)
cacTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAAccc > 3:99715/1‑149 (MQ=255)
ctGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGtt > 6:135720/1‑148 (MQ=255)
tGTCTCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGtt < 3:340795/147‑1 (MQ=255)
tGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCTATCAACCCGtt > 6:472452/1‑147 (MQ=255)
tGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGtt < 2:58276/147‑1 (MQ=255)
tGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGtt < 2:477397/147‑1 (MQ=255)
tCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCAt < 1:385175/136‑1 (MQ=255)
tCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCCATGAAGCCGTTCTGGACATGCGCCGAGAAGGTGTAGATACCGCGTTCGCCATACCGGGGGCTGCCATCAACCCGTTGTaa > 2:368137/1‑148 (MQ=255)
gCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTc > 3:64761/1‑149 (MQ=255)
gCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTc > 4:75597/1‑149 (MQ=255)
gCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGATGTATTc > 4:249087/1‑149 (MQ=255)
aaaGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCgg > 3:44517/1‑149 (MQ=255)
aaaGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCgg > 1:455639/1‑149 (MQ=255)
aaGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCgg < 6:440336/148‑1 (MQ=255)
gCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGcc < 5:135720/148‑1 (MQ=255)
cAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCt < 3:276111/149‑1 (MQ=255)
cAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCt < 4:241000/149‑1 (MQ=255)
aGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTg > 3:250978/1‑148 (MQ=255)
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TTTTTGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG > NC_002947_CJ‑RC/4888467‑4888755
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGATATTTTTGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAA > NC_002947_CJ‑RC/4888462‑4888758
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CGATATTTTTGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTA < NB501016:282:H2V7GAFX2:1:21204:14415:7950/151‑1 (MQ=60)
ATTTTTGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATAT < NB501016:282:H2V7GAFX2:4:11511:17827:14087/150‑1 (MQ=60)
ATTTTTGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATAT < NB501016:282:H2V7GAFX2:2:21111:23494:7666/150‑1 (MQ=60)
ATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACA > NB501016:282:H2V7GAFX2:2:11101:20190:19698/1‑145 (MQ=60)
TGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGA < NB501016:282:H2V7GAFX2:4:11409:18395:9160/150‑1 (MQ=60)
GAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAG < NB501016:282:H2V7GAFX2:2:11311:22488:5073/150‑1 (MQ=60)
AAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGACAGCTTAGCCGATGAAAACCCATAGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGC > NB501016:282:H2V7GAFX2:1:11302:3050:11463/1‑151 (MQ=60)
AACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCA < NB501016:282:H2V7GAFX2:2:11208:3745:13348/151‑1 (MQ=60)
CGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACCCTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCAC > NB501016:282:H2V7GAFX2:1:11108:16591:20145/1‑150 (MQ=60)
TATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCAT > NB501016:282:H2V7GAFX2:1:21103:22339:4027/1‑151 (MQ=60)
ATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATG < NB501016:282:H2V7GAFX2:2:11305:20169:17567/151‑1 (MQ=60)
GCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATG > NB501016:282:H2V7GAFX2:4:21510:13411:14110/1‑149 (MQ=60)
CGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGC > NB501016:282:H2V7GAFX2:3:11402:19400:12976/1‑151 (MQ=60)
ATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAA < NB501016:282:H2V7GAFX2:3:21601:16331:8356/151‑1 (MQ=60)
CGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCATCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGAGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATG > NB501016:282:H2V7GAFX2:3:11610:15012:2206/1‑151 (MQ=60)
CGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATG > NB501016:282:H2V7GAFX2:3:21601:23326:13706/1‑151 (MQ=60)
CGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATG > NB501016:282:H2V7GAFX2:3:21605:23327:14846/1‑151 (MQ=60)
CGCAAACCTACGTTTTCACGGGCGCTCTGACGAAAGCCAGATTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATG < NB501016:282:H2V7GAFX2:2:11205:1975:8433/151‑1 (MQ=60)
CAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAG < NB501016:282:H2V7GAFX2:2:11105:26216:19338/151‑1 (MQ=60)
CAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATG > NB501016:282:H2V7GAFX2:3:11603:3135:2945/1‑149 (MQ=60)
AAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAGAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGA < NB501016:282:H2V7GAFX2:2:11311:8286:4698/151‑1 (MQ=60)
AACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAG < NB501016:282:H2V7GAFX2:3:11601:13488:1411/151‑1 (MQ=60)
AACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAG < NB501016:282:H2V7GAFX2:4:21410:4909:2291/151‑1 (MQ=60)
CCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGC > NB501016:282:H2V7GAFX2:4:21607:24621:14193/1‑150 (MQ=60)
CCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCA > NB501016:282:H2V7GAFX2:2:11202:25362:18734/1‑127 (MQ=60)
ACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGC < NB501016:282:H2V7GAFX2:1:21105:7678:13300/151‑1 (MQ=60)
CGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCC < NB501016:282:H2V7GAFX2:4:21408:15522:11213/151‑1 (MQ=60)
CTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTG < NB501016:282:H2V7GAFX2:2:21210:21025:16787/149‑1 (MQ=60)
GACGAAAGCCTGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGGAAAGCATGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGT < NB501016:282:H2V7GAFX2:4:11512:21134:12614/149‑1 (MQ=60)
CGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAG > NB501016:282:H2V7GAFX2:2:11211:7536:7272/1‑125 (MQ=60)
CGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAG > NB501016:282:H2V7GAFX2:3:11510:24113:4727/1‑125 (MQ=60)
AAGCCAGCTTAGCCGATGAAAACCCATCGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGC < NB501016:282:H2V7GAFX2:2:11310:5200:16770/151‑1 (MQ=60)
CCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGT < NB501016:282:H2V7GAFX2:2:21110:14216:12952/151‑1 (MQ=60)
GCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGA > NB501016:282:H2V7GAFX2:2:21302:21360:15272/1‑150 (MQ=60)
TAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGG < NB501016:282:H2V7GAFX2:1:11311:6877:10337/150‑1 (MQ=60)
TAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGG < NB501016:282:H2V7GAFX2:3:11606:6774:19648/150‑1 (MQ=60)
CCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTA < NB501016:282:H2V7GAFX2:1:21211:12498:2600/151‑1 (MQ=60)
AACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGC > NB501016:282:H2V7GAFX2:2:21202:3153:15675/1‑151 (MQ=60)
CCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTT > NB501016:282:H2V7GAFX2:4:21502:25826:11719/1‑151 (MQ=60)
ATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCG > NB501016:282:H2V7GAFX2:2:11306:16415:2689/1‑151 (MQ=60)
GACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCA < NB501016:282:H2V7GAFX2:3:21602:23353:13091/151‑1 (MQ=60)
ACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCAT < NB501016:282:H2V7GAFX2:2:11212:11676:14413/151‑1 (MQ=60)
CTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTGCTGGTCATGAGCCGTGAAGGTGTAGATACCGCGTACGGCCTCC > NB501016:282:H2V7GAFX2:1:21106:3278:1571/1‑151 (MQ=60)
TAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCC > NB501016:282:H2V7GAFX2:4:11402:17718:17883/1‑151 (MQ=60)
GCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGG > NB501016:282:H2V7GAFX2:4:11511:17167:19967/1‑151 (MQ=60)
CCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGG < NB501016:282:H2V7GAFX2:1:21209:9677:11579/151‑1 (MQ=60)
CGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGG < NB501016:282:H2V7GAFX2:4:21407:14515:19445/151‑1 (MQ=60)
GTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGC > NB501016:282:H2V7GAFX2:2:11311:17712:15987/1‑151 (MQ=60)
GAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCA < NB501016:282:H2V7GAFX2:4:21502:13003:15214/150‑1 (MQ=60)
ACACTCTGTCGCAAAGCAATTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCG < NB501016:282:H2V7GAFX2:3:21508:1853:5326/151‑1 (MQ=60)
ACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCG > NB501016:282:H2V7GAFX2:2:11203:9177:14476/1‑151 (MQ=60)
CACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGT > NB501016:282:H2V7GAFX2:2:11107:14727:16441/1‑151 (MQ=60)
CTGTCTCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTG < NB501016:282:H2V7GAFX2:2:21204:19311:16415/149‑1 (MQ=60)
CTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGCCTGCCATCAACCCGTTG < NB501016:282:H2V7GAFX2:2:11102:4212:13557/149‑1 (MQ=60)
GTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATC < NB501016:282:H2V7GAFX2:1:21209:13094:1617/138‑1 (MQ=60)
CGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCG > NB501016:282:H2V7GAFX2:2:11110:19100:12464/1‑151 (MQ=60)
CAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGC > NB501016:282:H2V7GAFX2:1:21308:22362:10324/1‑151 (MQ=60)
CAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGC > NB501016:282:H2V7GAFX2:2:11107:12841:12896/1‑151 (MQ=60)
AAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCC < NB501016:282:H2V7GAFX2:3:11508:12660:18105/151‑1 (MQ=60)
CCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTG < NB501016:282:H2V7GAFX2:2:21105:10921:4244/151‑1 (MQ=60)
AAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGA > NB501016:282:H2V7GAFX2:2:21101:4499:4733/1‑150 (MQ=60)
GTTATATACAATTACAAAATCGATGAGGCACAAAACATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCAATCAACCCGTTGTATTAGGCCCTGAAA > NB501016:282:H2V7GAFX2:4:21409:26372:5002/1‑150 (MQ=60)
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CGATATTTTTGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAA > NC_002947_CJ‑RC/4888462‑4888758
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
