Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F11 I1 R1
|
56 |
79.5 |
3383150 |
98.4% |
3329019 |
146.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
4,888,612 |
G→A |
intergenic (‑225/‑33) |
PP_4296 ← / → gcl |
hypothetical protein/glyoxylate carboligase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 4,888,612 | 0 | G | A | 100.0%
| 236.4
/ NA
| 69 | intergenic (‑225/‑33) | PP_4296/gcl | hypothetical protein/glyoxylate carboligase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (28/41); total (28/41) |
TTTTTGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCC > NC_002947_CJ‑RC/4888467‑4888752
|
tttttGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTtata > 5:216674/1‑148 (MQ=255)
tttttGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTtata > 3:95299/1‑148 (MQ=255)
tttttGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTtata < 2:42683/148‑1 (MQ=255)
cAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACaa < 5:366513/149‑1 (MQ=255)
cAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACa > 8:390867/1‑148 (MQ=255)
cAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACa < 5:161411/148‑1 (MQ=255)
aaTATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACaaa < 4:17604/149‑1 (MQ=255)
aaTATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACaa > 1:257066/1‑148 (MQ=255)
aaTATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACaa > 3:32935/1‑148 (MQ=255)
ttttGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATc > 4:406069/1‑148 (MQ=255)
ttttGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATc < 6:271437/148‑1 (MQ=255)
tttGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGa > 4:247364/1‑149 (MQ=255)
tGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGAt < 5:369115/148‑1 (MQ=255)
aaaCGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGa < 2:222161/148‑1 (MQ=255)
aaaCGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAg < 4:38868/149‑1 (MQ=255)
aaCGATCGTATGCGCTGGCGCACACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTACGCCGTCAGGCGTGAATACACTCTGTCGCACAGCAAGTTATATCCAATTACAACATCGCGGAgg < 4:369349/149‑1 (MQ=255)
aaCGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAgg < 4:363500/149‑1 (MQ=255)
tCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGcaca > 4:88281/1‑148 (MQ=255)
gTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACaaa < 3:322630/148‑1 (MQ=255)
aTGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCa > 7:382407/1‑149 (MQ=255)
tGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCAt < 3:88281/149‑1 (MQ=255)
cGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGa < 6:375019/149‑1 (MQ=255)
gATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAg < 5:235816/149‑1 (MQ=255)
gcAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGCATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGCGGCACAACCCATGAGCAAAAt > 8:324365/1‑149 (MQ=255)
gcAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAAt < 5:80768/149‑1 (MQ=255)
aaaCCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATga < 4:188604/149‑1 (MQ=255)
aaaCCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATga < 7:365142/149‑1 (MQ=255)
aaCCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATgag < 5:387407/149‑1 (MQ=255)
aCCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATgaga < 2:20800/149‑1 (MQ=255)
aCCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATgaga < 3:138849/149‑1 (MQ=255)
aCCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATgaga < 6:417640/149‑1 (MQ=255)
aCCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATgaga < 2:396579/149‑1 (MQ=255)
cTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATGGATGAGGCACAAACCATGAGCAAAATGagag > 5:419735/1‑148 (MQ=255)
tCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGAt < 4:293004/148‑1 (MQ=255)
tctGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCt > 5:383146/1‑149 (MQ=255)
tGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTgg > 7:291441/1‑149 (MQ=255)
gACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGt > 3:210515/1‑149 (MQ=255)
aCGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTg < 2:342600/146‑1 (MQ=255)
gAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCAt > 8:122939/1‑149 (MQ=255)
aaGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATgc > 4:405897/1‑149 (MQ=255)
aaGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATAAACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATgc < 4:221808/149‑1 (MQ=255)
aaGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTAAATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATgc < 8:341471/149‑1 (MQ=255)
aGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATgcg > 3:15276/1‑149 (MQ=255)
gCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGt > 6:68888/1‑148 (MQ=255)
aGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGaa < 3:177110/147‑1 (MQ=255)
aGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAg < 5:68888/148‑1 (MQ=255)
cGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAACCCATGAGCAAAATGAGAGCATTCGATGCAGCCGTTCTGGGCATGCGCCGTGAAGgtgt < 6:216674/149‑1 (MQ=255)
cGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGgtgt < 2:98699/149‑1 (MQ=255)
cGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGgtgt < 1:55403/149‑1 (MQ=255)
gATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGgtg > 3:369331/1‑147 (MQ=255)
aaaaCCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGAt < 1:131719/148‑1 (MQ=255)
aCCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACcg > 7:398632/1‑149 (MQ=255)
aCCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCgg < 8:398632/148‑1 (MQ=255)
aCCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCgg < 2:178421/148‑1 (MQ=255)
cTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCAt > 6:90190/1‑149 (MQ=255)
tAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATc > 8:240771/1‑149 (MQ=255)
gTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCgggg > 4:382980/1‑149 (MQ=255)
gTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCgggg < 2:355230/149‑1 (MQ=255)
gCGAGAATACACTCTGTCGCAAAGCAAGTAATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTCTAGATACCGCGTTCGGCATCCCGGGGGCtcc > 3:262632/1‑147 (MQ=255)
tGAATACCCTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGAAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCAt < 8:113526/149‑1 (MQ=255)
tGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCAt < 1:76845/149‑1 (MQ=255)
acTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCg > 6:341858/1‑149 (MQ=255)
acTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCg > 4:97037/1‑149 (MQ=255)
tGTCGCTAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACGATGAGCTAAATGAGTGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGtt < 4:262632/147‑1 (MQ=255)
tGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGtt < 3:406069/147‑1 (MQ=255)
tGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGtt < 8:3405/147‑1 (MQ=255)
tCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTAt > 3:300509/1‑149 (MQ=255)
tCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTAt > 6:291472/1‑149 (MQ=255)
gCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTc > 5:200768/1‑149 (MQ=255)
gCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTc > 4:195420/1‑149 (MQ=255)
aaaGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCgg < 5:217549/149‑1 (MQ=255)
aGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGcc < 8:382407/149‑1 (MQ=255)
|
TTTTTGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCC > NC_002947_CJ‑RC/4888467‑4888752
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATATTTTTGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAA > NC_002947_CJ‑RC/4888464‑4888761
|
ATATTTTTGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTAT > NB501016:282:H2V7GAFX2:2:11107:19252:15848/1‑150 (MQ=60)
ATTTTTGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATAT > NB501016:282:H2V7GAFX2:2:11205:25538:7355/1‑150 (MQ=60)
ATTTTTGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCAATGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATAT > NB501016:282:H2V7GAFX2:3:11612:23196:18682/1‑150 (MQ=60)
ACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAA < NB501016:282:H2V7GAFX2:3:21603:13014:7859/151‑1 (MQ=60)
ACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAA < NB501016:282:H2V7GAFX2:3:11604:14108:3264/150‑1 (MQ=60)
CAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAA > NB501016:282:H2V7GAFX2:1:21107:7469:12124/1‑150 (MQ=60)
CAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAA > NB501016:282:H2V7GAFX2:2:11106:20899:15224/1‑150 (MQ=60)
TTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATG < NB501016:282:H2V7GAFX2:3:21603:11470:15674/150‑1 (MQ=60)
CGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAAC < NB501016:282:H2V7GAFX2:2:21209:21921:16464/150‑1 (MQ=60)
TATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCAT > NB501016:282:H2V7GAFX2:4:21603:1792:14352/1‑151 (MQ=60)
ATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATG < NB501016:282:H2V7GAFX2:2:11204:10282:4507/151‑1 (MQ=60)
CGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGC < NB501016:282:H2V7GAFX2:3:21404:13461:11550/151‑1 (MQ=60)
CGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATG < NB501016:282:H2V7GAFX2:3:11502:21711:18372/151‑1 (MQ=60)
CAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAG < NB501016:282:H2V7GAFX2:4:21512:21331:13795/151‑1 (MQ=60)
AAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGA < NB501016:282:H2V7GAFX2:3:21606:4590:14616/151‑1 (MQ=60)
AACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAG < NB501016:282:H2V7GAFX2:2:11212:5476:10491/151‑1 (MQ=60)
CCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATGGATGAGGCACAAACCATGAGCAAAATGAGAGC > NB501016:282:H2V7GAFX2:3:21612:3372:9942/1‑150 (MQ=60)
CTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTG > NB501016:282:H2V7GAFX2:3:21605:8200:20130/1‑151 (MQ=60)
CTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGT > NB501016:282:H2V7GAFX2:4:21412:16804:10815/1‑151 (MQ=60)
TGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTC > NB501016:282:H2V7GAFX2:2:11312:24742:2017/1‑151 (MQ=60)
AAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGC > NB501016:282:H2V7GAFX2:2:11103:14861:13920/1‑151 (MQ=60)
TAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGG < NB501016:282:H2V7GAFX2:3:11412:18033:19574/150‑1 (MQ=60)
TAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAG < NB501016:282:H2V7GAFX2:2:11306:22258:15199/149‑1 (MQ=60)
CCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTA < NB501016:282:H2V7GAFX2:1:11109:22862:14462/151‑1 (MQ=60)
CGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGT > NB501016:282:H2V7GAFX2:2:21306:18956:9108/1‑149 (MQ=60)
GAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATA < NB501016:282:H2V7GAFX2:1:11210:9980:6789/150‑1 (MQ=60)
AACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGC > NB501016:282:H2V7GAFX2:4:21606:23998:10303/1‑151 (MQ=60)
GGCGAGAATACACTCTGTCGCAAAGCAAGTAATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTCTAGATACCGCGTTCGGCATCCCGGGGGCTCCC > NB501016:282:H2V7GAFX2:2:21109:16990:10506/1‑151 (MQ=60)
GTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATC < NB501016:282:H2V7GAFX2:1:11201:20127:4363/151‑1 (MQ=60)
CTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTG < NB501016:282:H2V7GAFX2:2:21312:14951:5342/149‑1 (MQ=60)
GTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATT > NB501016:282:H2V7GAFX2:2:21206:21603:1851/1‑151 (MQ=60)
CGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCG > NB501016:282:H2V7GAFX2:3:11610:19848:8294/1‑151 (MQ=60)
CAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGC < NB501016:282:H2V7GAFX2:3:21401:25387:3440/151‑1 (MQ=60)
ATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAA < NB501016:282:H2V7GAFX2:2:11201:12434:7840/150‑1 (MQ=60)
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ATATTTTTGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAA > NC_002947_CJ‑RC/4888464‑4888761
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
