Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F48 I1 R1
|
58 |
71.3 |
3054194 |
98.3% |
3002272 |
146.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
4,888,612 |
G→A |
intergenic (‑225/‑33) |
PP_4296 ← / → gcl |
hypothetical protein/glyoxylate carboligase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 4,888,612 | 0 | G | A | 100.0%
| 238.8
/ NA
| 70 | intergenic (‑225/‑33) | PP_4296/gcl | hypothetical protein/glyoxylate carboligase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (36/34); total (36/34) |
TTTTGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGA > NC_002947_CJ‑RC/4888468‑4888756
|
ttttGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTtatata > 8:298983/1‑149 (MQ=255)
aCAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTAc > 2:242522/1‑148 (MQ=255)
cAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACa < 1:273561/148‑1 (MQ=255)
aaTATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACaa > 3:59127/1‑148 (MQ=255)
aaTATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACaa > 7:202242/1‑148 (MQ=255)
atatTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACaaaa < 5:46066/149‑1 (MQ=255)
tGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGAt < 6:336710/148‑1 (MQ=255)
aaCGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAgg > 7:387456/1‑149 (MQ=255)
cGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACaaa > 6:15542/1‑149 (MQ=255)
tGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCAt < 7:98006/149‑1 (MQ=255)
tGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCAt < 2:95246/149‑1 (MQ=255)
cGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGa < 4:81246/149‑1 (MQ=255)
aTGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAg > 3:85858/1‑148 (MQ=255)
tGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGc > 2:283391/1‑148 (MQ=255)
tGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCa < 4:59127/149‑1 (MQ=255)
cgcAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCaaaa < 1:242522/149‑1 (MQ=255)
gcAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAAt > 3:332103/1‑149 (MQ=255)
cAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATAGAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATg < 2:278316/149‑1 (MQ=255)
aCCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATgaga < 8:196338/149‑1 (MQ=255)
cTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGagag > 7:61909/1‑148 (MQ=255)
ttCACGGGCGTTCTTACTAATGCCTGCTTTGCGTATTAAAACCAATTGACCTAAGCCGTCAGGGGTTAATACAATCTGTCGC‑AAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGAt < 1:134163/148‑1 (MQ=255)
ttCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGAt > 6:68467/1‑149 (MQ=255)
aCGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATg > 6:326433/1‑147 (MQ=255)
aCGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCa < 8:182267/149‑1 (MQ=255)
cGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAg > 1:30424/1‑149 (MQ=255)
gcgcTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCg < 1:113478/149‑1 (MQ=255)
aCGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTgg < 4:85858/147‑1 (MQ=255)
aCGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTg < 4:237791/146‑1 (MQ=255)
aCGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTg < 3:181136/146‑1 (MQ=255)
gAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCAt < 4:234547/149‑1 (MQ=255)
gAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCAt < 4:314478/149‑1 (MQ=255)
gAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCAt > 8:215955/1‑149 (MQ=255)
gAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAACACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGATCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTAAt > 3:41446/1‑149 (MQ=255)
aaGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATgc < 5:308838/149‑1 (MQ=255)
cAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCg < 1:283391/149‑1 (MQ=255)
cAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCg > 6:107544/1‑149 (MQ=255)
gCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGgt < 5:110137/149‑1 (MQ=255)
gATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCTCCGTGAAGGTGTa < 3:126285/149‑1 (MQ=255)
gATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGgtg > 4:338951/1‑147 (MQ=255)
tGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGa < 6:17884/149‑1 (MQ=255)
aaCCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATAcc < 6:163606/149‑1 (MQ=255)
aTTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGTAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGtt > 6:198057/1‑149 (MQ=255)
aTTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGtt > 3:319238/1‑149 (MQ=255)
gACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCg < 5:15542/148‑1 (MQ=255)
aCCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCgg > 4:123167/1‑148 (MQ=255)
cTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCAt > 7:181864/1‑149 (MQ=255)
aGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATcc < 8:202242/148‑1 (MQ=255)
gTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCgggg < 1:225060/149‑1 (MQ=255)
gTCAGGCGTGAATACACTCAGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCgggg > 5:104511/1‑149 (MQ=255)
tCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCggggg > 2:154623/1‑149 (MQ=255)
aGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGgtgt > 8:161202/1‑121 (MQ=255)
aGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGgtgt < 7:161202/121‑1 (MQ=255)
gCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGc > 6:378911/1‑149 (MQ=255)
gCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGc > 8:140651/1‑149 (MQ=255)
gCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGc > 5:28305/1‑149 (MQ=255)
gTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGGAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCa > 8:223142/1‑149 (MQ=255)
gTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCa > 6:46573/1‑149 (MQ=255)
gTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGCTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCa > 8:203368/1‑149 (MQ=255)
aTACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCaa < 5:326433/149‑1 (MQ=255)
tACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGAGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAAc > 1:54873/1‑149 (MQ=255)
tctGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGtt > 2:350158/1‑149 (MQ=255)
tctGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGtt > 7:6335/1‑149 (MQ=255)
tCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACAGCGATCGGCATCCCGGGGGCTGCAATCAACCCGATGTAt > 6:9661/1‑149 (MQ=255)
gCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCGTGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTc < 7:289932/149‑1 (MQ=255)
gCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTAtt < 5:245295/148‑1 (MQ=255)
cAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCg > 3:301314/1‑149 (MQ=255)
aaaGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCgg < 4:298690/149‑1 (MQ=255)
aaaGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTAGTATTCgg > 1:106723/1‑149 (MQ=255)
gCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGccc < 7:298983/149‑1 (MQ=255)
aGTTATATACAATTACAAAATCGATGAGGCACAAACGATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGa < 7:328691/149‑1 (MQ=255)
gTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGa > 1:308217/1‑148 (MQ=255)
|
TTTTGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGA > NC_002947_CJ‑RC/4888468‑4888756
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAA > NC_002947_CJ‑RC/4888476‑4888757
|
ACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAA < NB501016:282:H2V7GAFX2:1:21203:18780:7531/150‑1 (MQ=60)
CAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAA > NB501016:282:H2V7GAFX2:4:21401:13545:16504/1‑150 (MQ=60)
CAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAA > NB501016:282:H2V7GAFX2:2:11112:16179:7138/1‑150 (MQ=60)
AATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAAT < NB501016:282:H2V7GAFX2:3:11410:8263:2833/151‑1 (MQ=60)
AAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGC > NB501016:282:H2V7GAFX2:4:21611:12465:14825/1‑151 (MQ=60)
ATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATG < NB501016:282:H2V7GAFX2:4:11506:10930:9444/151‑1 (MQ=60)
GCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAG < NB501016:282:H2V7GAFX2:1:21305:13791:20280/151‑1 (MQ=60)
GATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGC > NB501016:282:H2V7GAFX2:2:11205:17678:6850/1‑150 (MQ=60)
GCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAAT < NB501016:282:H2V7GAFX2:1:21109:17811:8255/151‑1 (MQ=60)
CGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATG > NB501016:282:H2V7GAFX2:2:21306:15094:3052/1‑151 (MQ=60)
CCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGC > NB501016:282:H2V7GAFX2:4:11411:13695:17586/1‑150 (MQ=60)
tttcacgggcgttcttactaatgcctgctttgcgtattAAAACCAATTGACCTAAGCCGTCAGGGGTTAATACAATCTGTCGC‑AAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATG < NB501016:282:H2V7GAFX2:1:11212:16817:19598/112‑1 (MQ=60)
ACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGC > NB501016:282:H2V7GAFX2:1:11106:12030:4297/1‑151 (MQ=60)
GGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGT < NB501016:282:H2V7GAFX2:1:11209:5408:4118/151‑1 (MQ=60)
GACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGG < NB501016:282:H2V7GAFX2:2:11310:18428:10386/148‑1 (MQ=60)
CGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAACACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGATCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTAATG > NB501016:282:H2V7GAFX2:2:11108:11461:19822/1‑151 (MQ=60)
AAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCG < NB501016:282:H2V7GAFX2:3:21511:12958:13929/151‑1 (MQ=60)
CCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGT < NB501016:282:H2V7GAFX2:1:21205:19233:4532/151‑1 (MQ=60)
AGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTG < NB501016:282:H2V7GAFX2:3:11509:14422:18990/151‑1 (MQ=60)
CGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCTCCGTGAAGGTGTAG < NB501016:282:H2V7GAFX2:2:11212:2543:14815/151‑1 (MQ=60)
CATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTC > NB501016:282:H2V7GAFX2:2:21303:18224:13483/1‑151 (MQ=60)
TGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGG < NB501016:282:H2V7GAFX2:3:11404:24329:1749/150‑1 (MQ=60)
CCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATC > NB501016:282:H2V7GAFX2:4:11610:14954:1436/1‑151 (MQ=60)
CGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGG < NB501016:282:H2V7GAFX2:1:21106:17578:1259/151‑1 (MQ=60)
CGTCAGGCGTGAATACACTCAGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGG > NB501016:282:H2V7GAFX2:3:11508:24538:18518/1‑151 (MQ=60)
CAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTA < NB501016:282:H2V7GAFX2:4:11606:21820:3317/123‑1 (MQ=60)
GGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCC > NB501016:282:H2V7GAFX2:3:11406:21187:11479/1‑151 (MQ=60)
AATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAAC < NB501016:282:H2V7GAFX2:3:21602:17485:16430/151‑1 (MQ=60)
ATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGAGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACC > NB501016:282:H2V7GAFX2:1:11110:10799:10019/1‑151 (MQ=60)
CTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTG > NB501016:282:H2V7GAFX2:4:11402:17528:3904/1‑151 (MQ=60)
CGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCGTGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCG < NB501016:282:H2V7GAFX2:4:21505:4855:10614/151‑1 (MQ=60)
CGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC < NB501016:282:H2V7GAFX2:3:21411:13361:6273/150‑1 (MQ=60)
GCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGG > NB501016:282:H2V7GAFX2:2:21211:15703:14295/1‑151 (MQ=60)
CAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTAGTATTCGGC > NB501016:282:H2V7GAFX2:1:11207:19453:18313/1‑151 (MQ=60)
AGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCT < NB501016:282:H2V7GAFX2:4:21507:12286:3324/151‑1 (MQ=60)
AAGTTATATACAATTACAAAATCGATGAGGCACAAACGATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAA < NB501016:282:H2V7GAFX2:4:21512:18733:9840/151‑1 (MQ=60)
AGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAA > NB501016:282:H2V7GAFX2:1:21209:17481:19234/1‑150 (MQ=60)
TATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGC > NB501016:282:H2V7GAFX2:4:11606:14392:9983/1‑106 (MQ=60)
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ACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAA > NC_002947_CJ‑RC/4888476‑4888757
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
