Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F12 I1 R1
|
58 |
76.7 |
3263832 |
98.3% |
3208346 |
146.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
4,888,612 |
G→A |
intergenic (‑225/‑33) |
PP_4296 ← / → gcl |
hypothetical protein/glyoxylate carboligase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 4,888,612 | 0 | G | A | 100.0%
| 224.7
/ NA
| 65 | intergenic (‑225/‑33) | PP_4296/gcl | hypothetical protein/glyoxylate carboligase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (32/33); total (32/33) |
TTGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGA > NC_002947_CJ‑RC/4888470‑4888756
|
ttGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTtatata < 8:212436/147‑1 (MQ=255)
gTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACaa < 1:316586/148‑1 (MQ=255)
aCAATATTTTGAAACGATCGTATGCGATGGCACAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTAc > 5:96192/1‑148 (MQ=255)
cAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTAc > 8:45580/1‑147 (MQ=255)
atatTTCGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAACCCCATTGCACTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATTCAATTACaaa > 8:190317/1‑148 (MQ=255)
tatTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAAt > 3:233336/1‑149 (MQ=255)
ttttGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAAt > 8:136255/1‑147 (MQ=255)
tGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGAt < 1:105084/148‑1 (MQ=255)
tGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGAt < 5:364070/148‑1 (MQ=255)
tGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGAt < 1:384432/148‑1 (MQ=255)
gAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTATCCGATGAAAAACCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGAt < 7:99465/147‑1 (MQ=255)
aaaCGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAg < 6:267341/149‑1 (MQ=255)
aaCGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAgg < 5:189212/149‑1 (MQ=255)
aCGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAgg < 7:134031/148‑1 (MQ=255)
tATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAAc > 5:60298/1‑148 (MQ=255)
tGCGATGGCACAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCAt < 6:96192/149‑1 (MQ=255)
cGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCAt > 3:101066/1‑147 (MQ=255)
gcAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAAt < 2:225514/149‑1 (MQ=255)
gcAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAAt > 4:1963/1‑149 (MQ=255)
gcAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCAATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAAt > 1:321493/1‑149 (MQ=255)
aCCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATgaga < 3:1963/149‑1 (MQ=255)
aCCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATgaga < 1:309974/149‑1 (MQ=255)
ccTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATgaga < 8:153178/148‑1 (MQ=255)
ccTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATgaga < 8:310304/148‑1 (MQ=255)
ttttCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCATGTTATATTCAATTACAAAATCGATGAGGCACACACCATGAGCAAAATGAGAGCAAt > 8:227058/1‑147 (MQ=255)
tCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGAt < 4:388519/148‑1 (MQ=255)
aCGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATg > 4:250489/1‑147 (MQ=255)
gcTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGtt < 4:37574/149‑1 (MQ=255)
tctGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATg > 7:61446/1‑103 (MQ=255)
tctGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTc < 7:45580/148‑1 (MQ=255)
tctGACGAAAGCCAGATTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACAATCTGTCGAAAAGCAAGTGATATACAATTACAAATTCGATGAGGAACAAACCATGAGCAAAATGAGAGCAATCGATGAAGCCGTTCt > 6:165228/1‑149 (MQ=255)
ctGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGa < 8:61446/103‑1 (MQ=255)
aCGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGt > 1:211336/1‑148 (MQ=255)
aCGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCAGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGt > 6:402489/1‑148 (MQ=255)
gAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCAt > 4:176822/1‑149 (MQ=255)
ccAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATgcgc > 7:40068/1‑148 (MQ=255)
gCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTg < 3:223689/149‑1 (MQ=255)
ttAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGa < 7:385193/148‑1 (MQ=255)
aGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAg > 7:401891/1‑148 (MQ=255)
aGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGAAGCCGTTCTGGTCATGCGCCGTGAAg < 6:14431/148‑1 (MQ=255)
ccGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGgtg > 6:269789/1‑149 (MQ=255)
cGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGgtgt < 1:94586/149‑1 (MQ=255)
cGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGgt > 8:250946/1‑147 (MQ=255)
gAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAg > 7:115341/1‑147 (MQ=255)
aaCCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATAc > 7:4937/1‑148 (MQ=255)
ccATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACcgc < 7:153273/148‑1 (MQ=255)
aTTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGtt < 5:17902/149‑1 (MQ=255)
ttGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTc < 3:129017/149‑1 (MQ=255)
aCCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCg > 7:74805/1‑147 (MQ=255)
cGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCggg < 2:281462/149‑1 (MQ=255)
gTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCggg > 8:89465/1‑148 (MQ=255)
cGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGc > 6:113120/1‑148 (MQ=255)
aTACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCaa > 2:140599/1‑149 (MQ=255)
acacTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAAc > 7:401768/1‑148 (MQ=255)
acTCTGTCGTAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCg > 3:293252/1‑149 (MQ=255)
tGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGtt < 2:211336/147‑1 (MQ=255)
tGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGACCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGtt < 6:35482/147‑1 (MQ=255)
tGTCGCAAAGCAAGTTATATACAATAACAAAATCGATCAGGAACAAACCATGATCAAAATGAGAGCAATCGATTCAGCCGTGCTGGTCATGCGCCGTGAAGGTGTAGAAACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGtt < 5:165228/147‑1 (MQ=255)
gCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTAtt > 8:176181/1‑148 (MQ=255)
gCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTAtt > 7:231075/1‑148 (MQ=255)
cAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTAtt < 7:250946/147‑1 (MQ=255)
cAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTc > 7:21884/1‑148 (MQ=255)
gCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGccc < 6:60298/149‑1 (MQ=255)
gCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGccc < 5:405093/149‑1 (MQ=255)
cAAGTTATATACAATTACAAAATCGATGAGGCACAAACAATGAGCAAAATGAGAGCAATCGATGCAGCCGATCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCAGTTGAATTCGcccat > 4:250259/1‑147 (MQ=255)
gTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGa < 7:317129/148‑1 (MQ=255)
|
TTGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGA > NC_002947_CJ‑RC/4888470‑4888756
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAG > NC_002947_CJ‑RC/4888471‑4888762
|
TGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAAT < NB501016:282:H2V7GAFX2:1:21207:23139:17609/150‑1 (MQ=60)
TACAATATTTTGAAACGATCGTATGCGATGGCACAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACA > NB501016:282:H2V7GAFX2:3:11506:7116:4232/1‑150 (MQ=60)
ATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATC > NB501016:282:H2V7GAFX2:2:21105:2857:12213/1‑151 (MQ=60)
TTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTATCCGATGAAAAACCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATG < NB501016:282:H2V7GAFX2:4:11505:8340:10465/150‑1 (MQ=60)
TTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATG < NB501016:282:H2V7GAFX2:1:11206:15043:7890/150‑1 (MQ=60)
TTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATG < NB501016:282:H2V7GAFX2:3:21605:25553:3955/150‑1 (MQ=60)
TTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATG < NB501016:282:H2V7GAFX2:1:21309:17933:1102/150‑1 (MQ=60)
AAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGC < NB501016:282:H2V7GAFX2:4:11511:1578:7387/151‑1 (MQ=60)
AAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGC < NB501016:282:H2V7GAFX2:3:11609:26136:13122/151‑1 (MQ=60)
GTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACC > NB501016:282:H2V7GAFX2:3:11412:11027:1085/1‑150 (MQ=60)
GCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATG > NB501016:282:H2V7GAFX2:2:11207:26427:1749/1‑149 (MQ=60)
CGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCAATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATG > NB501016:282:H2V7GAFX2:1:21208:17405:15699/1‑151 (MQ=60)
AACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAG < NB501016:282:H2V7GAFX2:2:11101:22550:8022/151‑1 (MQ=60)
AACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAG < NB501016:282:H2V7GAFX2:1:21206:4601:13514/151‑1 (MQ=60)
GCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCT < NB501016:282:H2V7GAFX2:4:11408:8454:10822/151‑1 (MQ=60)
CTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAG > NB501016:282:H2V7GAFX2:4:11411:11789:2393/1‑106 (MQ=60)
GACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTC > NB501016:282:H2V7GAFX2:1:21101:12549:7837/1‑150 (MQ=60)
GCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCG > NB501016:282:H2V7GAFX2:4:11407:19756:13070/1‑151 (MQ=60)
AGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGA < NB501016:282:H2V7GAFX2:2:21103:13713:14689/151‑1 (MQ=60)
GCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAA < NB501016:282:H2V7GAFX2:4:21606:17173:16856/151‑1 (MQ=60)
TAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGT > NB501016:282:H2V7GAFX2:4:21609:4896:16787/1‑151 (MQ=60)
CCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTA < NB501016:282:H2V7GAFX2:1:11204:22965:11879/151‑1 (MQ=60)
TGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGAT > NB501016:282:H2V7GAFX2:4:11508:18288:4888/1‑150 (MQ=60)
AAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCG > NB501016:282:H2V7GAFX2:4:11401:17805:16696/1‑151 (MQ=60)
ACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCG < NB501016:282:H2V7GAFX2:4:11602:25365:14017/151‑1 (MQ=60)
CATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTC < NB501016:282:H2V7GAFX2:3:11404:24621:5543/151‑1 (MQ=60)
ATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCG < NB501016:282:H2V7GAFX2:2:11211:8247:16217/151‑1 (MQ=60)
GACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGC > NB501016:282:H2V7GAFX2:4:11501:10693:5866/1‑150 (MQ=60)
TACACTCTGTCGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCC > NB501016:282:H2V7GAFX2:4:21609:5975:16326/1‑151 (MQ=60)
CACTCTGTCGTAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGT > NB501016:282:H2V7GAFX2:2:21206:20319:8344/1‑151 (MQ=60)
CTGTCGCAAAGCAAGTTATATACAATAACAAAATCGATCAGGAACAAACCATGATCAAAATGAGAGCAATCGATTCAGCCGTGCTGGTCATGCGCCGTGAAGGTGTAGAAACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTG < NB501016:282:H2V7GAFX2:3:11605:23017:14487/149‑1 (MQ=60)
CGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCG > NB501016:282:H2V7GAFX2:4:21404:6383:7404/1‑151 (MQ=60)
CGCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTC < NB501016:282:H2V7GAFX2:4:21407:6044:14631/150‑1 (MQ=60)
GCAAAGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGG > NB501016:282:H2V7GAFX2:4:11404:9685:13673/1‑151 (MQ=60)
AGCAAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCT < NB501016:282:H2V7GAFX2:3:21612:10680:11556/151‑1 (MQ=60)
AAGTTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAA < NB501016:282:H2V7GAFX2:4:21506:9893:18941/151‑1 (MQ=60)
TTATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAA < NB501016:282:H2V7GAFX2:3:21601:24389:2587/150‑1 (MQ=60)
ATATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAG < NB501016:282:H2V7GAFX2:2:21108:2788:15304/151‑1 (MQ=60)
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TGTATACAATATTTTGAAACGATCGTATGCGATGGCGCAAACCTCCGTTTTCACGGGCGCTCTGACGAAAGCCAGCTTAGCCGATGAAAACCCATTGACCTAAGCCGTCAGGCGTGAATACACTCTGTCGCAAAGCAAGTTGTATACAATTACAAAATCGATGAGGCACAAACCATGAGCAAAATGAGAGCAATCGATGCAGCCGTTCTGGTCATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAG > NC_002947_CJ‑RC/4888471‑4888762
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
