Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F42 I1 R1 60 69.9 3000528 98.3% 2949519 146.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_002947_CJ‑RC 3,010,911 Δ77,850 bp [PP_2631]–[PP_2697] 67 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947_CJ‑RC 3010911 3088760 77850 65 [17] [8] 56 [PP_2631]–[PP_2697] [PP_2631],bcsG,PP_2633,PP_2634,bcsA,bcsB,bcsZ,PP_2638,dapA‑II,PP_2640,PP_2641,PP_2642,pcaY,mgtA,PP_2646,PP_2647,PP_2648,PP_2649,gbd,PP_2651,PP_2652,PP_2653,PP_5537,PP_2654,PP_2655,pstS,pstC,pstA,pstB‑I,PP_2660,PP_2661,PP_2662,PP_2663,PP_2664,agmR,PP_2666,PP_2667,PP_2668,PP_2669,PP_5538,PP_2671,exaE,PP_2673,qedH‑I,PP_2675,PP_2676,PP_2677,PP_2678,qedH‑II,aldB‑II,pqqD‑II,yiaY,PP_2683,PP_2684,PP_2685,PP_2686,PP_2687,PP_2688,PP_2689,PP_2690,PP_2691,PP_2692,PP_2693,PP_2694,PP_2695,metR‑II,[PP_2697]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947_CJ‑RC = 301091017 (0.250)48 (0.700) 42/288 1.0 79.4% coding (149/186 nt) PP_2631 cellulose biosynthesis protein BcsF/YhjT
?NC_002947_CJ‑RC 3088761 = 8 (0.120)coding (392/510 nt) PP_2697 flavin reductase domain‑containing oxidoreductase

GATK/CNVnator alignment

N/A