Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F18 I1 R1 58 60.4 2754136 98.2% 2704561 146.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_002947_CJ‑RC 5,066,232 G→A S156S (AGC→AGT)  PP_4461 ← MFS transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947_CJ‑RC5,066,2320GA100.0% 255.8 / NA 74S156S (AGC→AGT) PP_4461MFS transporter
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (35/39);  total (35/39)

TCAAGAATAAGCTGAACGCAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACGCTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACATCTCAACATGACTAGCAGAATTGGAGCACCAACGCCAATA  >  NC_002947_CJ‑RC/5066087‑5066376
                                                                                                                                                 |                                                                                                                                                
tCAAGAATAAGCTGAACGCAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACActc                                                                                                                                               >  4:142095/1‑149 (MQ=255)
tCAAGAATAAGCTGAACGCAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACActc                                                                                                                                               >  4:59823/1‑149 (MQ=255)
tCAAGAATAAGCTGAACGCAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACActc                                                                                                                                               >  3:70647/1‑149 (MQ=255)
  gaGAATAAGCTGAACGCAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTg                                                                                                                                             >  6:200609/2‑149 (MQ=255)
  aaGAATAAGCTGAACGCAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACActct                                                                                                                                              <  4:50408/148‑1 (MQ=255)
     aaTAAGCTGAACGCAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGa                                                                                                                                           >  7:301430/1‑148 (MQ=255)
       tAAGCTGAACGCAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAAc                                                                                                                                        <  6:113873/149‑1 (MQ=255)
       tAAGCTGAACGCAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAAc                                                                                                                                        <  4:197955/149‑1 (MQ=255)
              aaCGCAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCaaa                                                                                                                                 <  2:75395/149‑1 (MQ=255)
              aaCGCAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCaaa                                                                                                                                 <  5:200609/149‑1 (MQ=255)
               aCGCAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCaaa                                                                                                                                 <  2:288844/148‑1 (MQ=255)
                   aaaGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATc                                                                                                                            >  2:182333/1‑149 (MQ=255)
                   aaaGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATc                                                                                                                            >  4:133780/1‑149 (MQ=255)
                   aaaGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATc                                                                                                                            >  1:239758/1‑149 (MQ=255)
                   aaaGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATc                                                                                                                            <  1:221988/149‑1 (MQ=255)
                       aTCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCtt                                                                                                                        <  5:260195/149‑1 (MQ=255)
                        tCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTa                                                                                                                       <  1:22750/149‑1 (MQ=255)
                        tCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTa                                                                                                                       <  5:131727/149‑1 (MQ=255)
                         cGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTAc                                                                                                                      >  4:194737/1‑149 (MQ=255)
                          gCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCATTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTAc                                                                                                                      <  7:130402/148‑1 (MQ=255)
                          gCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACg                                                                                                                     <  2:239758/149‑1 (MQ=255)
                           cAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGACCGCCGAGGCTACTAGCGAGGCCAGCAAACCGCCCCCAGAGGAGCTCACACACTGGAAACTTCCAAAGAATCCCTTACGa                                                                                                                    >  2:294070/1‑149 (MQ=255)
                            aaGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGAc                                                                                                                   >  5:321003/1‑149 (MQ=255)
                            aaGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGAc                                                                                                                   <  4:121289/149‑1 (MQ=255)
                             aGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGAcc                                                                                                                  <  2:54715/149‑1 (MQ=255)
                                  aCCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAg                                                                                                             >  2:206354/1‑149 (MQ=255)
                                       cGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGaa                                                                                                                              <  3:156601/127‑1 (MQ=255)
                                       cGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGaa                                                                                                                              >  4:156601/1‑127 (MQ=255)
                                       cGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGAc                                                                                                        >  7:221679/1‑149 (MQ=255)
                                         aTGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCa                                                                                                      >  7:224561/1‑149 (MQ=255)
                                              cGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCa                                                                                                 <  1:80478/149‑1 (MQ=255)
                                              cGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCa                                                                                                 >  7:68247/1‑149 (MQ=255)
                                                 aaCTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGa                                                                                              <  3:133780/149‑1 (MQ=255)
                                                   cTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGata                                                                                            <  5:26643/149‑1 (MQ=255)
                                                      gCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAAt                                                                                                                             <  5:28355/113‑1 (MQ=255)
                                                      gCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAAt                                                                                                                             >  6:28355/1‑113 (MQ=255)
                                                      gCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATaa                                                                                         <  5:224505/149‑1 (MQ=255)
                                                      gCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATaa                                                                                         <  4:86829/149‑1 (MQ=255)
                                                        cAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGatat                                                                                           >  6:114092/1‑145 (MQ=255)
                                                         aGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGAt                                                                                      >  4:17794/1‑149 (MQ=255)
                                                           ccccAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATg                                                                                     >  1:140621/1‑148 (MQ=255)
                                                           ccccAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGc                                                                                    <  5:51151/149‑1 (MQ=255)
                                                             ccagtccagtAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCTGGAGACCATTCCACGATATAAGATg                                                                                     >  8:122299/1‑146 (MQ=255)
                                                                   cagtAGATCTTCAGCAGGAATTAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGc                                                                            <  8:236882/149‑1 (MQ=255)
                                                                    agtAGATCTTCAGCAGTAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGcc                                                                           <  4:282078/149‑1 (MQ=255)
                                                                     gtAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGccc                                                                          >  2:94763/1‑149 (MQ=255)
                                                                           cTTCAGCTGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTc                                                                     <  3:312156/148‑1 (MQ=255)
                                                                              cagcagGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTc                                                                     <  3:59823/145‑1 (MQ=255)
                                                                               agcagGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGa                                                                                                                               <  8:251840/86‑1 (MQ=255)
                                                                               agcagGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGa                                                                                                                               >  7:251840/1‑86 (MQ=255)
                                                                               agcagGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCAc                                                                >  1:137402/1‑149 (MQ=255)
                                                                                     aaTGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTgcgg                                                          <  2:6301/149‑1 (MQ=255)
                                                                                            aaGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATcc                                                   >  4:7824/1‑149 (MQ=255)
                                                                                              gagCGCCGAGGCTACTAGCGAGTCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCtt                                                 <  7:259190/149‑1 (MQ=255)
                                                                                              gagCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCtt                                                 <  5:52882/149‑1 (MQ=255)
                                                                                                 cgcCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGga                                              <  5:45975/149‑1 (MQ=255)
                                                                                                 cgcCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGga                                              <  8:155373/149‑1 (MQ=255)
                                                                                                 cgcCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGga                                              <  1:182333/149‑1 (MQ=255)
                                                                                                 cgcCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGga                                              <  6:321003/149‑1 (MQ=255)
                                                                                                    cGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGgaga                                            >  5:131140/1‑148 (MQ=255)
                                                                                                    cGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGAc                                           <  5:114092/149‑1 (MQ=255)
                                                                                                     gAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACa                                          >  2:58622/1‑149 (MQ=255)
                                                                                                          tactaGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACAtctc                                      >  6:29371/1‑148 (MQ=255)
                                                                                                          tactaGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACAtctc                                      >  3:331385/1‑148 (MQ=255)
                                                                                                               gCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACACAGGAAACTTGCAAAGAATACCATACGACCGGCAGGAGACCAATGCACGATTTAAGATGCAGAGGTTCCCCATTCGCCACCTGCGGCGAATGCTTGGAGGCATCTACACAt                                 >  8:157204/1‑148 (MQ=255)
                                                                                                               gCGAGGCCAGCAAAGAGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACATCTCAACATg                                <  3:194737/149‑1 (MQ=255)
                                                                                                                cGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACATCTCAACATGa                               <  1:206354/149‑1 (MQ=255)
                                                                                                                     ccAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACATCTCAACATGACTAg                           >  4:69711/1‑148 (MQ=255)
                                                                                                                       aGCAAAGCGACCCCAGAGGAGATCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCAGCAGCAGACAATTCCACGATAAAAGATGCAGAGGTGCCCCAATCGCCACCTGCGGCGAATCCATGGAGACATCTCAACATGACTAg                           >  7:298293/1‑146 (MQ=255)
                                                                                                                             gcgcCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACATCTCAACATGACTAGCAGAATTgg                  <  5:305128/149‑1 (MQ=255)
                                                                                                                                cccccAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACATCTCAACATGACTAGCAGAATTGGAGc               <  2:187717/149‑1 (MQ=255)
                                                                                                                                  cccAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACATCTCAACATGACTAGCAGAATTGGAGCAc             >  2:187308/1‑149 (MQ=255)
                                                                                                                                    cAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACATCTCAACATGACTAGCAGAATTGGAGCAcc            >  7:260688/1‑148 (MQ=255)
                                                                                                                                             tCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACATCTCAACATGACTAGCAGAATTGGAGCACCAACGCCAATa  >  4:17167/1‑149 (MQ=255)
                                                                                                                                                 |                                                                                                                                                
TCAAGAATAAGCTGAACGCAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACGCTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACATCTCAACATGACTAGCAGAATTGGAGCACCAACGCCAATA  >  NC_002947_CJ‑RC/5066087‑5066376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTCAAGAATAAGCTGAACGCAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACGCTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACATCTCAACATGACTAGCAGAATTGGAGCACCAACGCCAATAGT  >  NC_002947_CJ‑RC/5066086‑5066378
                                                                                                                                                  |                                                                                                                                                  
CTCAAGAATAAGCTGAACGCAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCT                                                                                                                                                >  NB501016:282:H2V7GAFX2:2:11203:21367:20027/1‑151 (MQ=60)
     GAATAAGCTGAACGCAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAA                                                                                                                                            >  NB501016:282:H2V7GAFX2:4:21601:24499:14897/1‑150 (MQ=60)
              GAACGCAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAG                                                                                                                                  <  NB501016:282:H2V7GAFX2:3:21406:23401:10086/151‑1 (MQ=60)
                   CAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCC                                                                                                                             <  NB501016:282:H2V7GAFX2:1:21110:8144:8344/151‑1 (MQ=60)
                   CAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCC                                                                                                                             >  NB501016:282:H2V7GAFX2:1:21202:1669:4132/1‑151 (MQ=60)
                       GATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTA                                                                                                                         <  NB501016:282:H2V7GAFX2:3:21507:18756:9422/151‑1 (MQ=60)
                        ATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTAC                                                                                                                        <  NB501016:282:H2V7GAFX2:1:11105:2016:8802/151‑1 (MQ=60)
                        ATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTAC                                                                                                                        <  NB501016:282:H2V7GAFX2:3:11604:22248:4863/151‑1 (MQ=60)
                          CGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCATTCCAGTAGATCTTCAGCAGTAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACG                                                                                                                       <  NB501016:282:H2V7GAFX2:4:11602:14059:19033/150‑1 (MQ=60)
                            CAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACC                                                                                                                    >  NB501016:282:H2V7GAFX2:3:21607:11253:17202/1‑151 (MQ=60)
                                       GCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACC                                                                                                         >  NB501016:282:H2V7GAFX2:4:21409:17564:14535/1‑151 (MQ=60)
                                       GCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAAT                                                                                                                               <  NB501016:282:H2V7GAFX2:2:11309:8688:6398/129‑1 (MQ=60)
                                         GATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCAT                                                                                                       >  NB501016:282:H2V7GAFX2:4:21410:3450:6286/1‑151 (MQ=60)
                                              ACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCAC                                                                                                  <  NB501016:282:H2V7GAFX2:1:11204:2737:16356/151‑1 (MQ=60)
                                              ACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCAC                                                                                                  >  NB501016:282:H2V7GAFX2:4:11502:12730:8928/1‑151 (MQ=60)
                                                 GAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGAT                                                                                               <  NB501016:282:H2V7GAFX2:2:11304:16927:17156/151‑1 (MQ=60)
                                                   ACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATAT                                                                                             <  NB501016:282:H2V7GAFX2:3:11406:14643:14592/151‑1 (MQ=60)
                                                      CGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAG                                                                                          <  NB501016:282:H2V7GAFX2:3:21411:24092:16568/151‑1 (MQ=60)
                                                      CGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATC                                                                                                                              <  NB501016:282:H2V7GAFX2:3:11407:15245:2834/115‑1 (MQ=60)
                                                           GCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCA                                                                                     <  NB501016:282:H2V7GAFX2:3:11412:24022:1605/151‑1 (MQ=60)
                                                           GCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGA                                                                                      >  NB501016:282:H2V7GAFX2:1:11305:8845:5609/1‑150 (MQ=60)
                                                                           TCTTCAGCTGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCG                                                                      <  NB501016:282:H2V7GAFX2:2:21308:14758:10957/150‑1 (MQ=60)
                                                                              TCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCG                                                                      <  NB501016:282:H2V7GAFX2:2:11201:1995:14622/147‑1 (MQ=60)
                                                                               CAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACC                                                                 >  NB501016:282:H2V7GAFX2:1:11304:11503:11485/1‑151 (MQ=60)
                                                                               CAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAA                                                                                                                                >  NB501016:282:H2V7GAFX2:4:21503:14938:15109/1‑88 (MQ=60)
                                                                                              AGAGCGCCGAGGCTACTAGCGAGTCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTG                                                  <  NB501016:282:H2V7GAFX2:4:21505:11643:5513/151‑1 (MQ=60)
                                                                                              AGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTG                                                  <  NB501016:282:H2V7GAFX2:3:11412:4449:8776/151‑1 (MQ=60)
                                                                                                 GCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAG                                               <  NB501016:282:H2V7GAFX2:1:21102:9414:5506/151‑1 (MQ=60)
                                                                                                 GCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAG                                               <  NB501016:282:H2V7GAFX2:3:11410:10540:18148/151‑1 (MQ=60)
                                                                                                    CCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACA                                            <  NB501016:282:H2V7GAFX2:3:11512:23063:14933/151‑1 (MQ=60)
                                                                                                    CCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGAC                                             >  NB501016:282:H2V7GAFX2:3:11604:12821:2732/1‑150 (MQ=60)
                                                                                                          CTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACATCTCA                                       >  NB501016:282:H2V7GAFX2:2:21312:15719:6401/1‑150 (MQ=60)
                                                                                                               AGCGAGGCCAGCAAAGAGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACATCTCAACATGA                                 <  NB501016:282:H2V7GAFX2:2:21105:23102:7543/151‑1 (MQ=60)
                                                                                                                GCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACATCTCAACATGAC                                <  NB501016:282:H2V7GAFX2:1:21107:6462:2221/151‑1 (MQ=60)
                                                                                                                       CAGCAAAGCGACCCCAGAGGAGATCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCAGCAGCAGACAATTCCACGATAAAAGATGCAGAGGTGCCCCAATCGCCACCTGCGGCGAATCCATGGAGACATCTCAACATGACTAGC                            >  NB501016:282:H2V7GAFX2:4:21601:14592:2182/1‑148 (MQ=60)
                                                                                                                             AGCGCCCCCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACATCTCAACATGACTAGCAGAATTGGA                   <  NB501016:282:H2V7GAFX2:3:21604:16338:14046/151‑1 (MQ=60)
                                                                                                                                    CCAGAGGAGCTCACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACATCTCAACATGACTAGCAGAATTGGAGCACCA             >  NB501016:282:H2V7GAFX2:4:21505:18121:11403/1‑150 (MQ=60)
                                                                                                                                               CACACTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACATCTCAACATGACTAGCAGAATTGGAGCACCAACGCCAATAGT  >  NB501016:282:H2V7GAFX2:3:21511:18609:18279/1‑150 (MQ=60)
                                                                                                                                                  |                                                                                                                                                  
CTCAAGAATAAGCTGAACGCAAAGATCGCAAGGCCACCTGCGATGAACGGAACTCGCCAGCCCCAGTCCAGTAGATCTTCAGCAGGAATGAGCAAGAGCGCCGAGGCTACTAGCGAGGCCAGCAAAGCGCCCCCAGAGGAGCTCACGCTCTGGAAACTTCCAAAGAATCCCTTACGACCTGCAGGAGACCATTCCACGATATAAGATGCAGAGGTGCCCCATTCGCCACCTGCGGCGAATCCTTGGAGACATCTCAACATGACTAGCAGAATTGGAGCACCAACGCCAATAGT  >  NC_002947_CJ‑RC/5066086‑5066378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑