Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F49 I1 R1
|
57 |
62.9 |
2678826 |
98.4% |
2635964 |
146.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947_CJ‑RC |
4,888,831 |
Δ1 bp |
coding (187/1776 nt) |
gcl → |
glyoxylate carboligase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947_CJ‑RC | 4,888,829 | 0 | C | . | 100.0%
| 329.4
/ NA
| 71 | coding (185/1776 nt) | gcl | glyoxylate carboligase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (34/37); total (34/37) |
CGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGTCTG > NC_002947_CJ‑RC/4888690‑4888971
|
cGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAAc < 3:20357/149‑1 (MQ=255)
gTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAAcc < 8:114215/149‑1 (MQ=255)
aaGGTGTAGATACCGCGTTCGGCATCCCGGTGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCgg < 8:190857/149‑1 (MQ=255)
aaGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCgg < 1:291389/149‑1 (MQ=255)
gtgtAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGc > 1:140887/1‑148 (MQ=255)
gtgtAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGACACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGc > 3:85713/1‑148 (MQ=255)
tgtAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCaa > 5:165738/1‑149 (MQ=255)
gtAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCaa > 1:292862/1‑148 (MQ=255)
tAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAAc < 6:143328/148‑1 (MQ=255)
tAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACa > 8:123448/1‑149 (MQ=255)
tACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCgg < 5:231559/149‑1 (MQ=255)
aCCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGgt < 7:18712/149‑1 (MQ=255)
ccGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGgt < 3:310681/148‑1 (MQ=255)
cgcgTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGgtgt > 6:246132/1‑149 (MQ=255)
cgcgTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGgtgt > 5:89602/1‑149 (MQ=255)
gCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCg > 3:290182/1‑149 (MQ=255)
gCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCg < 6:89602/149‑1 (MQ=255)
aTCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCgg > 8:213220/1‑148 (MQ=255)
cccGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCAc > 8:45289/1‑149 (MQ=255)
ccGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACt < 1:318444/149‑1 (MQ=255)
gCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGc < 8:266014/149‑1 (MQ=255)
cTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGcc > 8:201029/1‑149 (MQ=255)
tGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGACAACATCGGTGTGTGCATCGGCACTTCCGGccc > 1:297058/1‑149 (MQ=255)
aCCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGc < 5:239224/109‑1 (MQ=255)
aCCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGc > 6:239224/1‑109 (MQ=255)
ttGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCTCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGAc < 3:176913/149‑1 (MQ=255)
ccTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCgg > 1:244404/1‑149 (MQ=255)
cTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGc < 6:61223/149‑1 (MQ=255)
gAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCt > 3:22991/1‑149 (MQ=255)
aaaaaaGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGcc < 7:123448/147‑1 (MQ=255)
aaaaGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTa < 3:261803/149‑1 (MQ=255)
aGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAg < 4:290182/149‑1 (MQ=255)
ggTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGcc > 3:303687/1‑149 (MQ=255)
gTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCt > 6:318162/1‑149 (MQ=255)
gTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCt > 5:6119/1‑149 (MQ=255)
gCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGACAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCgg < 2:297058/149‑1 (MQ=255)
cATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGc < 7:46158/149‑1 (MQ=255)
gATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGa < 4:85713/148‑1 (MQ=255)
gATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGa < 1:8673/148‑1 (MQ=255)
gATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGAc < 6:271743/149‑1 (MQ=255)
aTCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACt < 5:149082/149‑1 (MQ=255)
aTCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACt > 3:116391/1‑149 (MQ=255)
aCGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCa < 4:4052/149‑1 (MQ=255)
gTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATc > 2:256872/1‑149 (MQ=255)
tcgctcgTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGa > 1:161377/1‑149 (MQ=255)
tcgctcgTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGa > 2:152603/1‑149 (MQ=255)
tcgctcgTCACGTCGAAGGTGCCTCGCACATGGCCGAGCGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCAATCCCg > 4:32960/1‑148 (MQ=255)
gTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGCCTCCATCCCGATTCtgt > 5:272485/1‑149 (MQ=255)
gTCACCTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGCGTGTCCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCtgt < 6:306492/149‑1 (MQ=255)
tCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCtgtg > 5:211994/1‑149 (MQ=255)
tCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCtgtg > 7:200621/1‑149 (MQ=255)
tCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCtgtg > 1:110822/1‑149 (MQ=255)
aCGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCa < 3:127313/149‑1 (MQ=255)
cGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCAt < 4:22991/149‑1 (MQ=255)
gAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACt < 6:165738/149‑1 (MQ=255)
gTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGcc < 5:301747/149‑1 (MQ=255)
tGCCTCGCACATGGCCGAGGTCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCa < 4:143588/149‑1 (MQ=255)
cTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGgc > 5:166596/1‑149 (MQ=255)
tCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGgcg > 2:196466/1‑149 (MQ=255)
tCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGgcg > 2:261717/1‑149 (MQ=255)
tCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGCACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGgcg > 5:102818/1‑149 (MQ=255)
gCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGgcg < 1:114978/147‑1 (MQ=255)
acaTGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCAc < 1:256872/149‑1 (MQ=255)
caTGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACg > 5:209206/1‑149 (MQ=255)
ccGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGccc > 2:24019/1‑149 (MQ=255)
gAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGt > 2:278554/1‑149 (MQ=255)
gAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGt < 6:6119/149‑1 (MQ=255)
gggCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGTCt < 7:213220/149‑1 (MQ=255)
gggCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGTCt < 7:201029/149‑1 (MQ=255)
gggCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGTCt < 5:246132/149‑1 (MQ=255)
ggCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGTCTg < 8:140142/149‑1 (MQ=255)
|
CGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGTCTG > NC_002947_CJ‑RC/4888690‑4888971
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGTCTGCACAAGGAA > NC_002947_CJ‑RC/4888689‑4888980
|
CCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACC < NB501016:282:H2V7GAFX2:2:11105:17799:11871/151‑1 (MQ=60)
GAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGG < NB501016:282:H2V7GAFX2:1:21303:12875:8979/151‑1 (MQ=60)
GGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCA > NB501016:282:H2V7GAFX2:1:11306:11985:9064/1‑150 (MQ=60)
GGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGACACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCA > NB501016:282:H2V7GAFX2:2:11207:23260:14200/1‑150 (MQ=60)
GTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAAC > NB501016:282:H2V7GAFX2:3:11611:3999:15773/1‑151 (MQ=60)
TGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAAC > NB501016:282:H2V7GAFX2:1:21303:6696:16969/1‑150 (MQ=60)
ATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGT < NB501016:282:H2V7GAFX2:3:21502:15380:10684/151‑1 (MQ=60)
AACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTG < NB501016:282:H2V7GAFX2:4:11404:26636:16149/151‑1 (MQ=60)
ACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTG < NB501016:282:H2V7GAFX2:2:21310:11676:7045/150‑1 (MQ=60)
CCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTG > NB501016:282:H2V7GAFX2:3:11508:23870:5983/1‑151 (MQ=60)
GGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGG > NB501016:282:H2V7GAFX2:2:21306:5603:3570/1‑151 (MQ=60)
CCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTT < NB501016:282:H2V7GAFX2:1:21309:3567:14929/151‑1 (MQ=60)
CTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGACAACATCGGTGTGTGCATCGGCACTTCCGGCCCT > NB501016:282:H2V7GAFX2:1:21304:7128:17189/1‑151 (MQ=60)
AACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCA < NB501016:282:H2V7GAFX2:3:21504:18409:4931/111‑1 (MQ=60)
GTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCTCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACT < NB501016:282:H2V7GAFX2:2:21102:17059:15739/151‑1 (MQ=60)
CCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGC > NB501016:282:H2V7GAFX2:1:21204:15476:13441/1‑151 (MQ=60)
TGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTG > NB501016:282:H2V7GAFX2:2:11106:6384:4116/1‑151 (MQ=60)
GAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCT < NB501016:282:H2V7GAFX2:4:11602:16629:6639/149‑1 (MQ=60)
AAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTAC < NB501016:282:H2V7GAFX2:2:21211:12493:9058/151‑1 (MQ=60)
CGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCT > NB501016:282:H2V7GAFX2:2:21308:10273:18878/1‑151 (MQ=60)
GGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTC > NB501016:282:H2V7GAFX2:3:11402:18612:7441/1‑151 (MQ=60)
GCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCC < NB501016:282:H2V7GAFX2:4:11410:22768:5098/151‑1 (MQ=60)
CGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGAC < NB501016:282:H2V7GAFX2:1:11102:7837:15494/150‑1 (MQ=60)
GATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTC > NB501016:282:H2V7GAFX2:2:11302:25184:3292/1‑151 (MQ=60)
GATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTC < NB501016:282:H2V7GAFX2:3:11608:4099:8018/151‑1 (MQ=60)
CTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGAT > NB501016:282:H2V7GAFX2:1:11310:12096:19799/1‑151 (MQ=60)
CGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGCCTCCATCCCGATTCTGTG > NB501016:282:H2V7GAFX2:3:21511:4753:11421/1‑151 (MQ=60)
GTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGC > NB501016:282:H2V7GAFX2:4:21406:18842:12022/1‑151 (MQ=60)
GTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGC > NB501016:282:H2V7GAFX2:1:11211:5578:18090/1‑151 (MQ=60)
GTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGC > NB501016:282:H2V7GAFX2:3:21410:19045:5259/1‑151 (MQ=60)
CACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCAT < NB501016:282:H2V7GAFX2:2:11304:18304:9150/151‑1 (MQ=60)
GGTGCCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCA < NB501016:282:H2V7GAFX2:3:21605:22612:9949/151‑1 (MQ=60)
CCTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCG > NB501016:282:H2V7GAFX2:3:11611:7786:19379/1‑151 (MQ=60)
CTCGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGCACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGC > NB501016:282:H2V7GAFX2:3:11510:17563:20106/1‑151 (MQ=60)
CGCACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGC < NB501016:282:H2V7GAFX2:1:11212:16402:15849/149‑1 (MQ=60)
CACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACG < NB501016:282:H2V7GAFX2:1:21207:1961:8746/151‑1 (MQ=60)
ACATGGCCGAGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGT > NB501016:282:H2V7GAFX2:3:21409:2374:12518/1‑151 (MQ=60)
AGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGTCTG < NB501016:282:H2V7GAFX2:3:21505:3552:15153/151‑1 (MQ=60)
AGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGTCTG < NB501016:282:H2V7GAFX2:4:21406:7129:13728/151‑1 (MQ=60)
AGGGCTACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGTCTG < NB501016:282:H2V7GAFX2:4:21409:2811:2232/151‑1 (MQ=60)
TACA‑CCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGTCTGCACA > NB501016:282:H2V7GAFX2:3:11402:12075:7473/1‑150 (MQ=60)
caCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGTCTGCACAAGG < NB501016:282:H2V7GAFX2:4:11410:3774:1617/149‑1 (MQ=60)
CGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGTCTGCACAAGGAA > NB501016:282:H2V7GAFX2:2:21202:2901:5292/1‑150 (MQ=60)
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CCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGTCTGCACAAGGAA > NC_002947_CJ‑RC/4888689‑4888980
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
