Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F44 I1 R1
|
56 |
64.5 |
2756482 |
98.4% |
2712378 |
146.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_002947_CJ‑RC |
4,888,833 |
Δ10 bp |
coding (189‑198/1776 nt) |
gcl → |
glyoxylate carboligase |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_002947_CJ‑RC |
4888833 |
4888842 |
10 |
75 [0] |
[0] 74 |
gcl |
glyoxylate carboligase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_002947_CJ‑RC |
= 4888832 | 0 (0.000) | 66 (1.070) |
54/280 |
0.2 |
100% |
coding (188/1776 nt) |
gcl |
glyoxylate carboligase |
| ? | NC_002947_CJ‑RC |
4888843 = |
0 (0.000) | coding (199/1776 nt) |
gcl |
glyoxylate carboligase |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGTCTGC > NC_002947_CJ‑RC/4888683‑4888972
|
CATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGACTCGCACATGGCCGAGGGCTACACCCGG > NB501016:282:H2V7GAFX2:1:21202:16899:6399/1‑151 (MQ=60)
TGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGT > NB501016:282:H2V7GAFX2:1:21301:11408:14874/1‑151 (MQ=60)
GTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTG < NB501016:282:H2V7GAFX2:2:11105:9282:13041/151‑1 (MQ=60)
GTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTACTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTG > NB501016:282:H2V7GAFX2:4:11409:17073:8859/1‑151 (MQ=60)
AGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCA < NB501016:282:H2V7GAFX2:1:21102:25023:7881/151‑1 (MQ=60)
CCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGC > NB501016:282:H2V7GAFX2:1:11107:26428:18501/1‑151 (MQ=60)
TCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTC < NB501016:282:H2V7GAFX2:2:11210:19810:18049/150‑1 (MQ=60)
ATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCC > NB501016:282:H2V7GAFX2:3:11603:4815:14236/1‑151 (MQ=60)
GGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGG < NB501016:282:H2V7GAFX2:3:11506:20533:12763/151‑1 (MQ=60)
GCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCTGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCCCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCCGCCCTGCCGGCACCG > NB501016:282:H2V7GAFX2:4:11503:24204:3214/1‑150 (MQ=60)
GCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCG > NB501016:282:H2V7GAFX2:4:11601:19691:8054/1‑150 (MQ=60)
CATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACA < NB501016:282:H2V7GAFX2:2:21305:13142:7332/151‑1 (MQ=60)
CATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGAC > NB501016:282:H2V7GAFX2:1:11306:6931:19265/1‑150 (MQ=60)
CAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGG < NB501016:282:H2V7GAFX2:4:21604:11965:17850/151‑1 (MQ=60)
CAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGG < NB501016:282:H2V7GAFX2:2:21309:8803:15720/151‑1 (MQ=60)
AACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGT < NB501016:282:H2V7GAFX2:2:11208:3656:17155/151‑1 (MQ=60)
CCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTC > NB501016:282:H2V7GAFX2:3:11508:21344:9119/1‑150 (MQ=60)
GTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCC < NB501016:282:H2V7GAFX2:4:11502:10230:19743/151‑1 (MQ=60)
CCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCCGTACAGTG < NB501016:282:H2V7GAFX2:3:21603:4919:17148/151‑1 (MQ=60)
GGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGAC > NB501016:282:H2V7GAFX2:2:11103:3813:7491/1‑149 (MQ=60)
GGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCAT < NB501016:282:H2V7GAFX2:4:11606:13392:12469/151‑1 (MQ=60)
GGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCAT > NB501016:282:H2V7GAFX2:3:21609:15098:3060/1‑151 (MQ=60)
GATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGAT > NB501016:282:H2V7GAFX2:4:11502:21504:16082/1‑151 (MQ=60)
GTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTG < NB501016:282:H2V7GAFX2:1:11110:17073:7731/151‑1 (MQ=60)
CTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCAT > NB501016:282:H2V7GAFX2:2:21210:9318:12522/1‑151 (MQ=60)
GTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGC > NB501016:282:H2V7GAFX2:3:21602:3315:14202/1‑151 (MQ=60)
CGTCGAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGG > NB501016:282:H2V7GAFX2:2:21203:3553:14832/1‑151 (MQ=60)
GAAGGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCC < NB501016:282:H2V7GAFX2:2:21306:7032:3999/151‑1 (MQ=60)
GGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACG > NB501016:282:H2V7GAFX2:3:11508:13529:4788/1‑151 (MQ=60)
GGTGCCTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACG > NB501016:282:H2V7GAFX2:4:11509:24313:1433/1‑151 (MQ=60)
CTCGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCC > NB501016:282:H2V7GAFX2:2:21209:25514:10783/1‑151 (MQ=60)
CGCACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCG < NB501016:282:H2V7GAFX2:1:21112:21964:4326/150‑1 (MQ=60)
CGCACATGGCCGAGGGCAAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTCCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGT > NB501016:282:H2V7GAFX2:4:11410:24769:11240/1‑151 (MQ=60)
CACATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGTCT > NB501016:282:H2V7GAFX2:3:21603:19421:3951/1‑151 (MQ=60)
CATGGCCGAGGGCTAC‑‑‑‑‑‑‑‑‑‑ACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGTCTGC < NB501016:282:H2V7GAFX2:3:11510:17995:15938/151‑1 (MQ=60)
|
CATGCGCCGTGAAGGTGTAGATACCGCGTTCGGCATCCCGGGGGCTGCCATCAACCCGTTGTATTCGGCCCTGAAAAAAGTCGGTGGCATCGATCACGTCCTCGCTCGTCACGTCGAAGGTGCCTCGCACATGGCCGAGGGCTACACCCGCGCCAACCCGGGCAACATCGGTGTGTGCATCGGCACTTCCGGCCCTGCCGGCACCGACATGGTCACCGGCCTGTACAGTGCCTCGGCCGACTCCATCCCGATTCTGTGCATCACTGGCCAGGCGCCACGTGCCCGTCTGC > NC_002947_CJ‑RC/4888683‑4888972
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
