Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F11 I4 R1 73 908.3 39027734 99.3% 38754539 136.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC AE015451_phaM1 780,595 Δ1,248 bp coding (4‑1251/1254 nt) glyA‑II CDS (serine hydroxymethyltransferase) ←

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ AE015451_phaM1 780595 781842 1248 922 [0] [0] 932 glyA‑II CDS (serine hydroxymethyltransferase)

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451_phaM1 = 7805940 (0.000)915 (1.010) 126/268 0.2 100% coding (1252/1254 nt) glyA‑II CDS (serine hydroxymethyltransferase)
?AE015451_phaM1 781843 = 0 (0.000)coding (3/1254 nt) glyA‑II CDS (serine hydroxymethyltransferase)

GATK/CNVnator alignment

N/A