Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F73 I2 R1
|
76 |
833.2 |
37290668 |
99.4% |
37066923 |
136.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
AE015451_phaM1 |
780,595 |
Δ1,248 bp |
coding (4‑1251/1254 nt) |
glyA‑II CDS (serine hydroxymethyltransferase) ← |
|
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
AE015451_phaM1 |
780595 |
781842 |
1248 |
865 [0] |
[0] 889 |
glyA‑II CDS (serine hydroxymethyltransferase) |
|
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
AE015451_phaM1 |
= 780594 | 0 (0.000) | 859 (1.040) |
124/268 |
0.2 |
100% |
coding (1252/1254 nt) |
glyA‑II CDS (serine hydroxymethyltransferase) |
|
| ? | AE015451_phaM1 |
781843 = |
0 (0.000) | coding (3/1254 nt) |
glyA‑II CDS (serine hydroxymethyltransferase) |
|
GATK/CNVnator alignment
N/A
