Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F42 I4 R1
|
76 |
794.2 |
35354760 |
99.3% |
35107276 |
136.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AE015451_phaM1 |
2,586,629 |
Δ1 bp |
intergenic (+535/‑7) |
PP_t39 tRNA (tRNA‑Leu) → / → PP_2266 CDS (DNA‑directed RNA polymerase_ bacteriophage and mitochondrial type) |
–/– |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AE015451_phaM1 | 2,586,628 | 0 | T | . | 99.9%
| 4209.8
/ ‑3.9
| 797 | intergenic (+534/‑8) | PP_t39 tRNA (tRNA‑Leu)/PP_2266 CDS (DNA‑directed RNA polymerase_ bacteriophage and mitochondrial type) | –/– |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base . (372/424); minor base G (1/0); total (373/424) |
| Fisher's exact test for biased strand distribution p-value = 4.68e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 798 total aligned reads displayed.
CCGGGGCCGCGCCAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATTCCCTTTATGACTACCTCTATGACTCCTCTAGTTGGCCGCCTGGATGGTGAAGACCTCATCGCCACCCAAGTCCGTCTGGAAGAGGAGATGACCCAGCGCGGTGTGAGCCGTTTCCAGCGCAACGTAGAGGC > AE015451_phaM1/2586492‑2586760
|
gcgcCAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTtt > 2:3903862‑M1/1‑135 (MQ=255)
cgcCAGGGCGCTGTGGGAGACCACATCCAGAGGCGCGGACCCACAATTGGATTCCTCAGCGATGCCCTCTGAGAGGACCCTTAAAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑GCCCTTTttg < 2:17655515‑M1/137‑4 (MQ=255)
gcCAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgg > 1:6239037‑M1/1‑133 (MQ=255)
gcCAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgg > 2:10534859‑M1/1‑133 (MQ=255)
cAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGCTTACTTAATGATGGTTACTAAGAGA‑TCCCTTTttggga > 1:1416353‑M1/1‑131 (MQ=255)
cAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttggga > 2:7037446‑M1/1‑131 (MQ=255)
cAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttggga < 2:847595‑M1/137‑7 (MQ=255)
cAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttggga < 1:16350415‑M1/137‑7 (MQ=255)
cAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttggga > 2:8725203‑M1/1‑131 (MQ=255)
cAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttggga > 2:770668‑M1/1‑131 (MQ=255)
cAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttggga > 2:17073360‑M1/1‑131 (MQ=255)
aGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggac > 2:13784577‑M1/1‑130 (MQ=255)
gcTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttg > 2:17356853‑M1/1‑125 (MQ=255)
ccACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgt < 2:5342715‑M1/137‑24 (MQ=255)
ccACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgt < 1:15938471‑M1/137‑24 (MQ=255)
ccACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgt < 1:2151813‑M1/137‑24 (MQ=255)
ccACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgt < 2:3555850‑M1/137‑24 (MQ=255)
aTCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacatttctgattcgtggctc < 2:15136172‑M1/137‑28 (MQ=255)
tCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctc < 1:15639782‑M1/137‑29 (MQ=255)
tCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCATTTttgggacacattttctgattcgtggctc < 1:10065866‑M1/137‑29 (MQ=255)
ccATAGTCGCGGACCCACAAGTGGATTCCTTAGCTATGCCCCCTGAGATGACCCTTATAGACATCCTTAGAAATGATTACTTAATTATGATTACTAAGATA‑TCCCTTTttgggacacattttctgattcgtggctcg < 2:15715778‑M1/137‑30 (MQ=255)
ccAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcg > 2:2982981‑M1/1‑108 (MQ=255)
ccAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcg > 1:7310016‑M1/1‑108 (MQ=255)
ccAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcg > 1:11956901‑M1/1‑108 (MQ=255)
ccAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcg > 2:14608422‑M1/1‑108 (MQ=255)
ccAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcg > 1:9252241‑M1/1‑108 (MQ=255)
ccAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcg > 2:5587917‑M1/1‑108 (MQ=255)
ccAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCATTAGAGACATCCTTAAAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcg > 2:9587186‑M1/1‑108 (MQ=255)
cAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgg > 1:14891361‑M1/1‑107 (MQ=255)
agTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggca < 1:5861910‑M1/137‑34 (MQ=255)
cgcgGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGCAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagag > 1:66790‑M1/1‑101 (MQ=255)
cgcgGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagag > 2:15424813‑M1/1‑101 (MQ=255)
cgcgGACCCAAAATTGGATTCCTTAGCGACGCCCTCTGAGATGACCCTTAGAAACATCCGTAGCCATGATTACTCAATGATGATTAATAAGATA‑TCCCTTTttgggacacattttctgattcgtggctcggacagag > 2:12640333‑M1/1‑101 (MQ=255)
cgGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagta > 2:10679866‑M1/1‑99 (MQ=255)
gACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtagg < 1:8407677‑M1/137‑41 (MQ=255)
gACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtagg > 2:3270097‑M1/1‑97 (MQ=255)
aCCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggc > 1:12457284‑M1/1‑96 (MQ=255)
aaTTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgag < 2:5164759‑M1/137‑48 (MQ=255)
aaTTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgag < 2:238730‑M1/137‑48 (MQ=255)
aTTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTATAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagc < 1:16892266‑M1/137‑49 (MQ=255)
aTTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagc < 2:17144074‑M1/137‑49 (MQ=255)
aTTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagc < 1:171716‑M1/137‑49 (MQ=255)
aTTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACGAAGAGA‑TCCCTTTtttggacacattttctgattcgtggctcgggcagagtaggccctgagc < 1:3215046‑M1/137‑49 (MQ=255)
ccTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccg > 1:5663633‑M1/1‑81 (MQ=255)
ttAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtg < 2:16909513‑M1/137‑59 (MQ=255)
ttAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtg < 1:8104362‑M1/137‑59 (MQ=255)
ttAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtg < 1:11306495‑M1/137‑59 (MQ=255)
tAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgg < 1:637294‑M1/137‑60 (MQ=255)
tAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgg < 2:14872447‑M1/137‑60 (MQ=255)
tAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgg < 2:14385633‑M1/137‑60 (MQ=255)
aGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtggg > 2:7927897‑M1/1‑77 (MQ=255)
cGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcc > 1:479991‑M1/1‑75 (MQ=255)
ccTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccaccca < 2:11065800‑M1/137‑69 (MQ=255)
ccTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccaccca < 1:13784577‑M1/137‑69 (MQ=255)
ccTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccaccca < 1:1177903‑M1/137‑69 (MQ=255)
tctGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaa > 1:5350198‑M1/1‑67 (MQ=255)
tctGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaa > 1:1048118‑M1/1‑67 (MQ=255)
gagaTGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacg < 2:11776371‑M1/137‑74 (MQ=255)
gagaTGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacg < 1:8660527‑M1/137‑74 (MQ=255)
gagaTGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacg < 1:403045‑M1/137‑74 (MQ=255)
gaTGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggg > 1:10828165‑M1/1‑62 (MQ=255)
gACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcg < 2:4509394‑M1/137‑79 (MQ=255)
gACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcg < 1:4989977‑M1/137‑79 (MQ=255)
gACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcg < 2:13381512‑M1/137‑79 (MQ=255)
gACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcg < 2:12057602‑M1/137‑79 (MQ=255)
cccTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCTTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcggg < 1:4544562‑M1/137‑81 (MQ=255)
cccTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcggg < 2:12339600‑M1/137‑81 (MQ=255)
ccTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcggga > 2:1994207‑M1/1‑56 (MQ=255)
gagaCATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacac < 1:12789196‑M1/137‑87 (MQ=255)
gaCATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccg < 1:1871879‑M1/137‑89 (MQ=255)
cATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggcgcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccggg < 1:7769853‑M1/137‑91 (MQ=255)
aTCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccggga < 2:16523795‑M1/137‑92 (MQ=255)
tCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggac < 2:6231176‑M1/137‑93 (MQ=255)
ccTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggaca > 1:3646095‑M1/1‑44 (MQ=255)
cTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacac > 2:1303692‑M1/1‑43 (MQ=255)
cTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacac > 2:10049709‑M1/1‑43 (MQ=255)
cTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacac > 2:9259818‑M1/1‑43 (MQ=255)
tAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacat < 1:2759520‑M1/137‑97 (MQ=255)
tAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacat > 1:166910‑M1/1‑41 (MQ=255)
aGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatg > 2:8206257‑M1/1‑40 (MQ=255)
gAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatgg > 2:9818378‑M1/1‑39 (MQ=255)
ttACTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatggggacact > 1:791911‑M1/1‑32 (MQ=255)
aCTTAATGATGATTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatggggacacttg > 2:4343553‑M1/1‑30 (MQ=255)
atgatTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatggggacacttgggacacga < 1:15313643‑M1/137‑116 (MQ=255)
atgatTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatggggacacttgggacacga < 1:891318‑M1/137‑116 (MQ=255)
gatTACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatggggacacttgggacacgaat < 1:13214440‑M1/137‑118 (MQ=255)
ttACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatggggacacttgggacacgaattt < 2:66790‑M1/137‑120 (MQ=255)
ttACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatggggacacttgggacacgaattt < 1:14374077‑M1/137‑120 (MQ=255)
ttACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatggggacacttgggacacgaattt < 2:11326640‑M1/137‑120 (MQ=255)
ctaCTAAGAGA‑TCCCTTTttgggacacattttctgattcttggctcggacagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatggggacacttgggacacgaattt < 2:4879819‑M1/136‑120 (MQ=255)
tACTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatggggacacttgggacacgaattta < 1:2546962‑M1/137‑121 (MQ=255)
aCTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatggggacacttgggacacgaatttag > 1:982388‑M1/1‑16 (MQ=255)
aCTAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtg > 2:5803666‑M1/1‑16 (MQ=255)
tAAGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatggggacacttgggacacgaatttagcg < 1:466553‑M1/137‑124 (MQ=255)
aaGAGA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatggggacacttgggacacgaatttagcgt < 2:14007609‑M1/137‑125 (MQ=255)
aaGAGA‑TCCCTTTttgggacacattctctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatggggacacttgggacacgaatttagcgt < 2:16168247‑M1/137‑125 (MQ=255)
agagA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatggggacacttgggacacgaatttagcgtt < 2:2759095‑M1/137‑126 (MQ=255)
agagA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatggggacacttgggacacgaatttagcgtt < 1:420777‑M1/137‑126 (MQ=255)
agagA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatggggacacttgggacacgaatttagcgtt < 1:17358073‑M1/137‑126 (MQ=255)
agagA‑TCCCTTTttgggacacattttctgattcgtggctcgggcagagtaggccctgagcggcgaccgtgggcccacccaaaacggggcgggacacaccgggacacatggggacacttgggacacgaatttagcgtt < 1:10273735‑M1/137‑126 (MQ=255)
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CCGGGGCCGCGCCAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATTCCCTTTATGACTACCTCTATGACTCCTCTAGTTGGCCGCCTGGATGGTGAAGACCTCATCGCCACCCAAGTCCGTCTGGAAGAGGAGATGACCCAGCGCGGTGTGAGCCGTTTCCAGCGCAACGTAGAGGC > AE015451_phaM1/2586492‑2586760
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
