Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F63 I10 R1
|
15 |
480.3 |
15083540 |
98.2% |
14812036 |
150.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,396,058 |
Δ2 bp |
coding (200‑201/3801 nt) |
yhdP ← |
DUF3971‑AsmA2 domains protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,396,057 | 0 | G | . | 98.7%
| 2136.3
/ 20.5
| 459 | coding (202/3801 nt) | yhdP | DUF3971‑AsmA2 domains protein |
| Reads supporting (aligned to +/- strand): ref base G (3/3); new base . (233/220); total (236/223) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 |
| * | NC_000913 | 3,396,058 | 0 | C | . | 98.5%
| 2125.6
/ 24.0
| 458 | coding (201/3801 nt) | yhdP | DUF3971‑AsmA2 domains protein |
| Reads supporting (aligned to +/- strand): ref base C (5/2); new base . (231/220); total (236/222) |
| Fisher's exact test for biased strand distribution p-value = 4.51e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 491 total aligned reads displayed.
GGTGCGAAAGCGCAGCTGCCAGAAAGTGAGGTCGCGAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAAGCGTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTAAAGCAATACGCAGGCCGCTAACCAGCAGGGC > NC_000913/3395908‑3396201
||
ggTGCGAAAGCGCAGCTGCCAGAAAGTGAGGTCGCGAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAAgt > 7:1376797/1‑150 (MQ=255)
gTGCGAAAGCGCAGCTGCCAGAAAGTGAGGTCGCGAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAAgtc < 4:512717/151‑3 (MQ=255)
gCGAAAGCGCAGCTGCCAGAAAGTGAGGTCGCGAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAAgtcgg < 6:1113080/151‑5 (MQ=255)
cGAAAGCGCAGCTGCCAGAAAGTGAGGTCGCGAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAAggcggg < 2:777108/151‑6 (MQ=255)
aaaGCGCAGCTGCCAGAAAGTGAGGTCGCGAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAAgtcgggcc < 3:1656984/151‑8 (MQ=255)
cgcAGCTGCCAGAAAGTGAGGTCGCGAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCaaaa < 6:1444962/151‑1 (MQ=255)
gCTGCCAGAAAGTGAGGTCGCGAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCt < 2:586641/151‑1 (MQ=255)
gCTGCCAGAAAGTGAGGTCGCGAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCt > 6:1233700/1‑151 (MQ=255)
tGCCAGAAAGTGAGGTCGCGAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGc > 8:769676/1‑151 (MQ=255)
ccAGAAAGTGAGGTCGCGAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAAGCGTCGGGCCAAAATTCTGc > 1:1411961/1‑151 (MQ=255)
ccAGAAAGTGAGGTCGCGAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGcc > 2:375479/1‑150 (MQ=255)
ccAGAAAGTGAGGTCGCGAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGcc > 1:1685534/1‑150 (MQ=255)
cAGAAAGTGAGGTCGCGAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGcc > 6:866581/1‑149 (MQ=255)
gAAAGTGAGGTCGCGAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAgct > 8:417095/1‑151 (MQ=255)
aaaGTGAGGTCGCGAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAgctg > 2:1823787/1‑151 (MQ=255)
gTGAGGTCGCGAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAgctggct < 1:526611/151‑1 (MQ=255)
gAGGTCGCGAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCCTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTCCCAgctggctg > 7:843873/1‑150 (MQ=255)
gcgcgAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGc < 8:217192/150‑1 (MQ=255)
cgcgAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCt > 4:1379584/1‑151 (MQ=255)
cgcgAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCt < 7:1627789/151‑1 (MQ=255)
gcgAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTg > 6:1845534/1‑151 (MQ=255)
gcgAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTg > 5:542004/1‑151 (MQ=255)
gcgAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTg > 4:244194/1‑151 (MQ=255)
cgAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTg > 8:599969/1‑150 (MQ=255)
gAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGAc > 1:1004268/1‑151 (MQ=255)
aaaCTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACt < 6:962778/151‑1 (MQ=255)
aaCTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTg < 2:484857/151‑1 (MQ=255)
aaCTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTg > 4:1092702/1‑151 (MQ=255)
cTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAAATCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGCCTGAGAGCTGACTGGc > 1:1025784/1‑151 (MQ=255)
tGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCt > 4:465787/1‑151 (MQ=255)
ccAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTCAGAGCTGACTGGCTTc > 6:765153/1‑151 (MQ=255)
cAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCt < 7:433467/151‑1 (MQ=255)
aGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTa < 5:1564697/151‑1 (MQ=255)
cgcATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTAcc > 1:1150571/1‑151 (MQ=255)
cATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCgg < 3:106062/151‑1 (MQ=255)
tatGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGc > 6:313419/1‑150 (MQ=255)
aaCAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGcc > 5:995714/1‑150 (MQ=255)
cAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGt > 3:6326/1‑151 (MQ=255)
aGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTTCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTc < 5:1357107/151‑1 (MQ=255)
aGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTc < 7:1884762/151‑1 (MQ=255)
ggCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTcg < 4:130387/151‑1 (MQ=255)
tctGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCgg > 4:1734489/1‑151 (MQ=255)
gctGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCgg < 5:286910/150‑1 (MQ=255)
gCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGAt < 1:1858145/150‑1 (MQ=255)
gCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGAt < 1:898803/150‑1 (MQ=255)
cAGACATCCACCCCCAGAGTAACGCGTATAACCGAAAATTCGCCGCCATCTTTTAGTACTGCACGGAACTCGTGTGCTACTA‑‑GTCGGGCCAAAATTCTGCAAGCTGGGAACGAGCTCAATCGCTTCTACCCGCATGCCAGTCGCGGAATCt > 8:1160510/1‑151 (MQ=255)
aGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCt > 2:1322283/1‑150 (MQ=255)
aGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTGCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTa < 2:1017567/151‑1 (MQ=255)
gACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTAt < 1:154449/151‑1 (MQ=255)
gACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTAt > 5:1762267/1‑151 (MQ=255)
aCATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTAtt < 4:941690/151‑1 (MQ=255)
aTCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTAtttt < 7:1287097/151‑1 (MQ=255)
cAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTttgtt < 8:1799826/151‑1 (MQ=255)
aGCGCCAGAGTAACGCGTTTAACCGAAAAATCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTttgttg < 5:679383/151‑1 (MQ=255)
cAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCCTGCCAGTCGCGGGGTCTATTTTGTTGAGGAt > 8:1531382/1‑151 (MQ=255)
agagTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGAtt > 8:1351689/1‑151 (MQ=255)
agTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTc < 2:1184057/151‑1 (MQ=255)
gTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTcc < 3:1736481/151‑1 (MQ=255)
cgcgTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGAc > 5:1006938/1‑151 (MQ=255)
cgcgTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGAc < 7:766635/151‑1 (MQ=255)
cgcgTGTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGCGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCGGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGAc < 8:306390/151‑1 (MQ=255)
gTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTGTATTTTTTTGAGGATTTCCGGACGcc > 7:722191/1‑151 (MQ=255)
gTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGcc > 5:1475251/1‑151 (MQ=255)
gTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGcc < 1:364439/151‑1 (MQ=255)
ttAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCa < 2:1713688/150‑1 (MQ=255)
ttAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCa < 4:1872084/150‑1 (MQ=255)
tAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAgg > 1:666478/1‑151 (MQ=255)
aaCCGAAACTTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAgg < 3:582006/150‑1 (MQ=255)
aaCCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAgg < 5:1266208/150‑1 (MQ=255)
ccGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGt < 3:1856316/151‑1 (MQ=255)
gAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCa < 4:876288/151‑1 (MQ=255)
aaTTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCa > 2:841498/1‑148 (MQ=255)
aTTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCa > 2:1497081/1‑147 (MQ=255)
tCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCg < 5:1643704/131‑1 (MQ=255)
tCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGATGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGAAATCTATTTTTTTGAGGATTTCCGGACGCCACGCGtgcacatgc > 3:835048/1‑143 (MQ=255)
cgccgcCATCTTTTAGTTCTGCACGGATGTCGTGGGCTTCAA‑‑GTCGGCCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCg < 3:372159/151‑1 (MQ=255)
cgccATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGt > 7:516173/1‑150 (MQ=255)
cgccATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTa < 4:697282/151‑1 (MQ=255)
gccATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTaa < 6:449963/151‑1 (MQ=255)
gccATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTa > 1:1192861/1‑150 (MQ=255)
ccATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑C‑TCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAACTTGCGGTaa > 5:379509/1‑150 (MQ=255)
cATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTaa > 2:1841068/1‑149 (MQ=255)
cATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTAAAg < 5:861061/151‑1 (MQ=255)
cTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTAAAGCa > 7:1770881/1‑150 (MQ=255)
cTTTTAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTAAAGCa > 6:1566154/1‑150 (MQ=255)
ttttAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTAAAGCAAt > 8:1725003/1‑151 (MQ=255)
ttttAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGAGGCGGTAAAGCAAt > 7:1159071/1‑151 (MQ=255)
tttAGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTAAAGCAAt > 1:752225/1‑150 (MQ=255)
aGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTAAAGCAATACGc > 3:1259630/1‑151 (MQ=255)
aGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTAAAGCAATACGc < 4:591658/151‑1 (MQ=255)
aGTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTAAAGCAATACGc > 7:1554740/1‑151 (MQ=255)
gTTCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTACGGACGCCAGGCGTCAAGATGCCGTAAAGCAATACGc > 4:1584942/1‑150 (MQ=255)
tCTGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTAAAGCAATACGCAg < 3:1444931/150‑1 (MQ=255)
tGCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTAAAGCAATACGCAGGcc > 6:388875/1‑151 (MQ=255)
gCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTAAAGCAATACGCAGGcc < 2:651617/150‑1 (MQ=255)
gCACGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTAAAGCAATACGCAGGCCg > 5:1144928/1‑151 (MQ=255)
aCGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTAAAGCAATACGCAGGCCGCt < 6:1755209/151‑1 (MQ=255)
cGGATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGGCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTAAAGCAATACGCAGGCCGCTa < 2:90145/151‑1 (MQ=255)
ggATGTCGTGTGCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGAGTGGCTTCTACCCGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTAAAGCAATACGCAGGCCGCTaa < 6:64113/151‑1 (MQ=255)
tgtgCTTCAA‑‑GTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTAAAGCAATACGCAGGCCGCTAACCAGCAgg > 6:1310108/1‑151 (MQ=255)
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GGTGCGAAAGCGCAGCTGCCAGAAAGTGAGGTCGCGAAACTGCCAGCGCATATGTAACAGGCTCTGCCAGACATCCAGCGCCAGAGTAACGCGTTTAACCGAAAATTCGCCGCCATCTTTTAGTTCTGCACGGATGTCGTGTGCTTCAAGCGTCGGGCCAAAATTCTGCCAGCTGGCTGAGAGCTGACTGGCTTCTACCGGCATGCCAGTCGCGGATTCTATTTTGTTGAGGATTTCCGGACGCCAGGCGTCAAGATGCGGTAAAGCAATACGCAGGCCGCTAACCAGCAGGGC > NC_000913/3395908‑3396201
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
