ILT: ILT mg1655 - Experiment Stats
Stats |
Metadata |
Mutations |
Converged Mutations |
Fixed Mutations |
Filter
Notes
Publication: None
ALE, flask, and isolate counts
| ALE replicate | Flask count | Isolate count |
|---|---|---|
| 0 | 1 | 1 |
| 1 | 1 | 3 |
| 2 | 1 | 3 |
| 3 | 1 | 3 |
| 4 | 1 | 3 |
| 9 | 1 | 3 |
| 10 | 1 | 3 |
| 11 | 1 | 3 |
| 12 | 1 | 3 |
| 9 | 9 | 25 |
ALE experiment mutation counts
| Mutation Type | Unique | Observed |
|---|---|---|
| Single Base Substitutions | 267 | 297 |
| Multiple Base Substitutions | 3 | 3 |
| Deletions | 13 | 67 |
| Insertions | 3 | 13 |
| Mobile Element Insertions | 13 | 16 |
| Amplifications | 0 | 0 |
| Gene Conversions | 0 | 0 |
| Inversions | 0 | 0 |
| Total | 299 | 396 |
Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Unassigned Missing Coverage Evidence | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|---|
| A0 F0 I1 R1 | 4 | 1 | 422.4 | 11956043 | 98.9% | 11824526 | 164.0 |
| A1 F61 I1 R1 | 9 | 4 | 425.6 | 13492257 | 97.9% | 13208919 | 150.5 |
| A1 F61 I2 R1 | 12 | 7 | 455.0 | 14773989 | 95.0% | 14035289 | 150.5 |
| A1 F61 I8 R1 | 12 | 5 | 458.9 | 14688526 | 96.9% | 14233181 | 150.5 |
| A2 F67 I1 R1 | 9 | 2 | 413.0 | 13223691 | 96.9% | 12813756 | 150.5 |
| A2 F67 I2 R1 | 10 | 5 | 404.8 | 12948226 | 97.0% | 12559779 | 150.5 |
| A2 F67 I3 R1 | 15 | 3 | 371.5 | 11900289 | 97.4% | 11590881 | 150.3 |
| A3 F63 I6 R1 | 17 | 3 | 441.7 | 13935667 | 97.6% | 13601210 | 150.5 |
| A3 F63 I9 R1 | 15 | 4 | 403.8 | 12704894 | 98.5% | 12514320 | 150.5 |
| A3 F63 I10 R1 | 15 | 4 | 480.3 | 15083540 | 98.2% | 14812036 | 150.5 |
| A4 F84 I5 R1 | 18 | 4 | 424.9 | 13427302 | 97.8% | 13131901 | 150.5 |
| A4 F84 I7 R1 | 15 | 4 | 469.0 | 14922404 | 96.8% | 14444887 | 150.5 |
| A4 F84 I10 R1 | 267 | 4 | 426.1 | 13521957 | 97.0% | 13116298 | 150.5 |
| A9 F86 I2 R1 | 6 | 3 | 413.9 | 13008651 | 98.3% | 12787503 | 150.5 |
| A9 F86 I4 R1 | 6 | 4 | 466.1 | 14555496 | 98.8% | 14380830 | 150.5 |
| A9 F86 I8 R1 | 5 | 3 | 382.7 | 11983738 | 98.8% | 11839933 | 150.6 |
| A10 F86 I1 R1 | 5 | 4 | 441.1 | 13800913 | 98.6% | 13607700 | 150.5 |
| A10 F86 I8 R1 | 5 | 1 | 506.3 | 15827154 | 98.6% | 15605573 | 150.5 |
| A10 F86 I9 R1 | 7 | 4 | 510.1 | 16031740 | 98.6% | 15807295 | 150.5 |
| A11 F90 I1 R1 | 6 | 4 | 562.0 | 17530011 | 98.6% | 17284590 | 150.5 |
| A11 F90 I5 R1 | 5 | 2 | 517.0 | 16268649 | 98.3% | 15992081 | 150.5 |
| A11 F90 I10 R1 | 6 | 3 | 449.7 | 14150124 | 98.2% | 13895421 | 150.5 |
| A12 F91 I3 R1 | 6 | 4 | 493.5 | 15472780 | 98.6% | 15256161 | 150.5 |
| A12 F91 I7 R1 | 5 | 3 | 442.5 | 13839397 | 98.9% | 13687163 | 150.5 |
| A12 F91 I8 R1 | 12 | 3 | 457.5 | 14260847 | 98.7% | 14075455 | 150.5 |