Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F84 I10 R1
|
267 |
426.1 |
13521957 |
97.0% |
13116298 |
150.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,814,459 |
Δ1 bp |
coding (275/516 nt) |
luxS ← |
S‑ribosylhomocysteine lyase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,814,458 | 0 | A | . | 97.7%
| 1984.4
/ 38.2
| 443 | coding (276/516 nt) | luxS | S‑ribosylhomocysteine lyase |
| Reads supporting (aligned to +/- strand): ref base A (3/7); new base . (203/229); total (206/237) |
| Fisher's exact test for biased strand distribution p-value = 3.50e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 467 total aligned reads displayed.
AATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCAATCAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCACTTCTTTGT > NC_000913/2814308‑2814603
|
atatCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCat > 3:1162870/1‑150 (MQ=255)
atCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCatta < 8:1000659/151‑4 (MQ=255)
ccTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCattaga < 5:1142905/151‑6 (MQ=255)
ccTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCatt > 3:1140574/1‑146 (MQ=255)
gcgcTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCattagact < 1:139228/150‑8 (MQ=255)
gcgcTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTc > 7:686669/1‑151 (MQ=255)
gcgcTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTc > 6:862832/1‑151 (MQ=255)
cgcTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTc > 5:196885/1‑150 (MQ=255)
gcTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCat > 6:659047/1‑151 (MQ=255)
gcTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCat < 3:798930/151‑1 (MQ=255)
tCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCatat < 7:1551297/150‑1 (MQ=255)
tCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCata < 6:1413595/149‑1 (MQ=255)
ccTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATaa < 4:1454706/151‑1 (MQ=255)
ccTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATaa < 7:742283/151‑1 (MQ=255)
tGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATaaa > 4:914445/1‑150 (MQ=255)
cAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAAc < 6:416826/151‑1 (MQ=255)
aCGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGGAACACGCTGCTCATCTGGCGTA‑CGATTAGACTCATATAAAAACCg < 4:1074855/151‑1 (MQ=255)
aCGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCg > 1:1578241/1‑151 (MQ=255)
cGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGCTCCTGCACTTTCAGCACGGCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAAcccg > 2:1520063/1‑149 (MQ=255)
gAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGt < 3:934222/151‑1 (MQ=255)
gAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATAAGACTCATATAAAAACCGGt < 2:1429541/151‑1 (MQ=255)
gTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCCGTGc > 8:80236/1‑151 (MQ=255)
cATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGc > 8:376773/1‑151 (MQ=255)
aTCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGcc > 5:1351374/1‑150 (MQ=255)
aTCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGc > 7:1438192/1‑150 (MQ=255)
tCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGc > 8:1299857/1‑149 (MQ=255)
ggTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGcc < 2:1617181/150‑1 (MQ=255)
ggTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGcc < 3:1437255/150‑1 (MQ=255)
ggTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGc < 7:289648/149‑1 (MQ=255)
gTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCAATCAGACTCATATAAAAACCGGTGCGGCAGccc < 2:349056/151‑1 (MQ=255)
aGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTg > 4:1222900/1‑151 (MQ=255)
acacTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCg > 3:1580896/1‑148 (MQ=255)
ggTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGatat < 5:755846/149‑1 (MQ=255)
aGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATa < 3:1669073/151‑1 (MQ=255)
gTTCAGTTCCGGGATCTGATTCTGATACTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCAGTGGCGAGATATCGATAAtct > 5:1493706/1‑151 (MQ=255)
tCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACACATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAAtctc < 6:193827/150‑1 (MQ=255)
cAGTTCCGGGATCTGATTCTGTTCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTa < 8:194021/151‑1 (MQ=255)
aGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTac > 4:726525/1‑151 (MQ=255)
aGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCACGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTac > 8:1336864/1‑151 (MQ=255)
gggATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCAtt > 1:490140/1‑151 (MQ=255)
gATCTGATTCTGATCCTGCACTTTCAGCACGTATTCCATTGACGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGGGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTa < 3:1353803/150‑1 (MQ=255)
ctgattctgatCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGt > 1:1496855/1‑151 (MQ=255)
gattctgatCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTAc < 6:1327752/146‑1 (MQ=255)
attctggtCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTaa < 2:514812/151‑1 (MQ=255)
tgatCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATg > 6:742673/1‑151 (MQ=255)
gatCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGAt < 4:882982/149‑1 (MQ=255)
gatCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATgg > 7:512209/1‑151 (MQ=255)
gatCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATgg > 6:1037450/1‑151 (MQ=255)
atCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGt < 8:1403112/151‑1 (MQ=255)
ccTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGtt < 3:525205/150‑1 (MQ=255)
gCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTAc < 4:554993/149‑1 (MQ=255)
gCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTAc < 3:345899/149‑1 (MQ=255)
gCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACg < 5:1089720/150‑1 (MQ=255)
gCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTAAC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTAGCGTTAAGATGGTTAct < 2:1146667/150‑2 (MQ=255)
cACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGc > 3:1083118/1‑150 (MQ=255)
tttCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATa > 7:1074238/1‑150 (MQ=255)
ttCAGGACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATaa < 7:35132/150‑1 (MQ=255)
ttCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATaa > 1:1174101/1‑150 (MQ=255)
cAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATaaaa < 4:500935/150‑1 (MQ=255)
aGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAAcc > 8:67766/1‑151 (MQ=255)
gCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCa < 3:1273611/151‑1 (MQ=255)
gCACATCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCa < 3:430751/151‑1 (MQ=255)
cACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAg < 7:869326/151‑1 (MQ=255)
gTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCAATCAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAga > 7:1185870/1‑149 (MQ=255)
gTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCaa < 6:1201689/151‑1 (MQ=255)
tCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCaa > 8:1529996/1‑150 (MQ=255)
tCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCaa > 7:610354/1‑150 (MQ=255)
cTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAAc > 7:1348165/1‑151 (MQ=255)
ttCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCaaaat > 1:1006467/1‑149 (MQ=255)
ttCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCaaa < 5:1003975/149‑1 (MQ=255)
ttCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAAc > 3:733045/1‑150 (MQ=255)
tCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACa < 2:62999/150‑1 (MQ=255)
ccATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAg < 8:898940/150‑1 (MQ=255)
ccATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAg < 8:1180528/150‑1 (MQ=255)
cATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGt < 2:120980/151‑1 (MQ=255)
aTTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTg < 5:830517/151‑1 (MQ=255)
ttGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGc > 6:356587/1‑151 (MQ=255)
tGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGc < 1:325518/150‑1 (MQ=255)
gCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGTCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCt < 1:835561/150‑1 (MQ=255)
cGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAACACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTcc > 4:198138/1‑150 (MQ=255)
ttCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGt > 5:1213402/1‑151 (MQ=255)
tCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGCTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGt > 2:749458/1‑150 (MQ=255)
ccAGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTa < 5:1398012/150‑1 (MQ=255)
aGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTGATATAAAAACCGGTGCGGCCGCCCATTGGCGAGATATCGATAATATCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATgg > 6:1602376/1‑151 (MQ=255)
aGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATgg < 6:1468309/151‑1 (MQ=255)
aGGCATCAGCAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTCCTCCAGGGTATgg > 4:773885/1‑151 (MQ=255)
cAACACGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCtt < 2:136545/151‑1 (MQ=255)
acacGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTc < 2:898936/151‑1 (MQ=255)
cGCTGCTCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTgg < 1:983742/151‑1 (MQ=255)
gctgctCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGc > 5:525283/1‑151 (MQ=255)
gctgctCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGc < 4:343860/151‑1 (MQ=255)
tgctCATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCAt > 5:394212/1‑151 (MQ=255)
cATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCAc < 1:283729/150‑1 (MQ=255)
cATCTGGCGTACC‑ATTAGACTCATATAAAAACCGGGGCGGCAGCCCATTCGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATCGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCAct > 2:259755/1‑151 (MQ=255)
atGGCGTACC‑ATTAGACTAATATAAAAACCGGTGCGGCAGCGCATTGTCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGAAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCActtct < 8:562981/150‑1 (MQ=255)
ggCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCActtctt < 6:550126/150‑1 (MQ=255)
ggCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCACTTCttt < 7:1646158/151‑1 (MQ=255)
ggCGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCACTTCttt > 1:1692937/1‑151 (MQ=255)
cGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCACTTCTTTGt < 8:1693391/151‑1 (MQ=255)
cGTACC‑ATTAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCACTTCTTTGt < 5:1465301/151‑1 (MQ=255)
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AATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCAATCAGACTCATATAAAAACCGGTGCGGCAGCCCATTGGCGAGATATCGATAATCTCTACACCATTACCGTTAAGATGGTTACGCATAAAACCAGCAAACAGGTGCTCCAGGGTATGGATCCCTCTTTCTGGCATCACTTCTTTGT > NC_000913/2814308‑2814603
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
