Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F84 I10 R1
|
267 |
426.1 |
13521957 |
97.0% |
13116298 |
150.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,292,312 |
C→T |
P324P (CCC→CCT) |
yraK → |
putative fimbrial‑like adhesin protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,292,312 | 0 | C | T | 96.7%
| 1427.1
/ 22.2
| 424 | P324P (CCC→CCT) | yraK | putative fimbrial‑like adhesin protein |
| Reads supporting (aligned to +/- strand): ref base C (9/5); new base T (191/219); total (200/224) |
| Fisher's exact test for biased strand distribution p-value = 2.76e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 425 total aligned reads displayed.
GCGCATCGACGGTACAACTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCCGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCGTGCGGTAAAAGAAGACGTTGCGTTTTGATTAACGCA > NC_000913/3292165‑3292460
|
gcgcATCGACGGTACAACTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGtt < 1:111637/151‑1 (MQ=255)
cgcATCGACGGTACAACTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTg < 2:651956/151‑1 (MQ=255)
gcATCGACGGTACAACTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTg > 7:621988/1‑150 (MQ=255)
gcATCGACGGTACAACTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTg > 2:427120/1‑150 (MQ=255)
gACGGTACAACTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCtt < 1:1508942/151‑1 (MQ=255)
gACGGTACAACTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCtt < 1:223558/151‑1 (MQ=255)
ggTACAACTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCg > 3:815486/1‑151 (MQ=255)
ggTACAACTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCg < 3:1366472/151‑1 (MQ=255)
gTACAACTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCgg > 8:610998/1‑151 (MQ=255)
acgaCTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGc < 7:1470325/148‑1 (MQ=255)
aCAACTGGGGTAGTAGTCCAGGAGAACCTGGTCGCCAGGCGAAGAAGTTCAGAGTATGTGCGCGATGGCGGTTTTCGTATTGAAATTCTCGGCGGCGGATTTGAAAATATTGCTTTTCAGAACGGTATACTTCCTGTTGATCCTTCCggg < 3:1660361/150‑1 (MQ=255)
aCAACTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCggg < 4:1596404/150‑1 (MQ=255)
aCAACTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGc < 3:1317303/151‑1 (MQ=255)
cAACTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGc > 7:682728/1‑150 (MQ=255)
cAACTGCGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCTGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCa < 6:1110222/151‑1 (MQ=255)
cTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATgg > 8:228534/1‑151 (MQ=255)
gggTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCAc > 5:1505656/1‑151 (MQ=255)
gtagtaGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCg > 3:1227849/1‑151 (MQ=255)
agtagACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTc < 3:424314/151‑1 (MQ=255)
agtagACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTc < 4:950447/151‑1 (MQ=255)
agACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAat > 5:488043/1‑151 (MQ=255)
agACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAat < 6:584409/151‑1 (MQ=255)
agACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCCGTTGATCCTTCCGGGCATGGCACCGTCAat < 7:53442/151‑1 (MQ=255)
gACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAata < 6:387605/151‑1 (MQ=255)
caCCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAata < 1:47727/150‑1 (MQ=255)
aCCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAatat < 3:652926/151‑1 (MQ=255)
aCCAGTACAACCTGGTCGCCAGGCGAAGAAGTGCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAatat < 2:1503600/151‑1 (MQ=255)
gTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATgcgc < 4:369449/151‑1 (MQ=255)
aCAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATgcgcg < 1:32593/150‑1 (MQ=255)
aCAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATgcgcg < 1:566303/150‑1 (MQ=255)
aCCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTg < 2:1233833/151‑1 (MQ=255)
ggTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGc < 6:1560149/149‑1 (MQ=255)
gCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGtt > 1:1253234/1‑150 (MQ=255)
gCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTa < 5:778667/151‑1 (MQ=255)
gCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTACCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGtt > 2:923732/1‑150 (MQ=255)
ccAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTaa < 2:1029724/151‑1 (MQ=255)
ccAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTaa < 8:1169383/151‑1 (MQ=255)
gaagaaGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGt < 6:289080/151‑1 (MQ=255)
aagaagTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGtg > 5:1598504/1‑150 (MQ=255)
agaagTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCg > 8:1205968/1‑151 (MQ=255)
agTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCggtg > 4:557864/1‑151 (MQ=255)
gTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCggtgg < 1:415365/151‑1 (MQ=255)
tCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCggtggt < 3:1105838/150‑1 (MQ=255)
tCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCggtggt < 7:203400/150‑1 (MQ=255)
cAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGgtggtg > 2:776018/1‑150 (MQ=255)
aGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGgtggtg > 7:1201529/1‑149 (MQ=255)
cAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTg > 2:1471572/1‑151 (MQ=255)
aTGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGa < 3:195396/151‑1 (MQ=255)
gtgCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGGAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGaa < 5:881075/150‑1 (MQ=255)
gtgCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGaaa < 6:490620/151‑1 (MQ=255)
cccGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTAGCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAg < 7:988115/151‑1 (MQ=255)
gATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGaa < 2:1605531/151‑1 (MQ=255)
gATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGa > 5:986625/1‑150 (MQ=255)
tCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAAtt > 4:1471936/1‑151 (MQ=255)
tCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAAtt > 1:913086/1‑151 (MQ=255)
aTTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAgg > 5:197150/1‑151 (MQ=255)
ttCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAggg > 5:672838/1‑151 (MQ=255)
cGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGca < 8:1294505/151‑1 (MQ=255)
cGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGc > 6:1240452/1‑150 (MQ=255)
aTTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAg < 6:998625/151‑1 (MQ=255)
tGAAAATCTCGGCGGCGGAGTTGCAGATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGcc > 7:1135611/1‑151 (MQ=255)
tGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTATTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGcc > 7:412081/1‑151 (MQ=255)
gAAAATCTCGGCGGCGGAGTTGCAGATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGcca < 4:1139072/151‑1 (MQ=255)
gAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGTACGGGATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGcca < 2:239904/151‑1 (MQ=255)
aaaaTCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGccac > 8:1581405/1‑151 (MQ=255)
aaaaTCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGccac < 1:1693458/151‑1 (MQ=255)
aaaaTCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGccac > 2:724112/1‑151 (MQ=255)
aaaTCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGccacc > 5:1412609/1‑151 (MQ=255)
aaaTCTCGGCGGCGGAGTTGCAAATATTACTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGccacc < 4:637436/151‑1 (MQ=255)
aaTCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGccacc > 3:539359/1‑150 (MQ=255)
cggcggcggAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAATCAGGAAAATTTCAGAGCACAGCCACCATTAcc > 4:247123/1‑151 (MQ=255)
cggcggcggAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCAt < 4:1149973/147‑1 (MQ=255)
cggcggcggAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTAcc > 3:452386/1‑151 (MQ=255)
ggcggcggAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCg < 8:451374/151‑1 (MQ=255)
gcggcggAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGt > 5:1254204/1‑151 (MQ=255)
gcggcggAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGt > 1:657426/1‑151 (MQ=255)
gcggcggAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCCGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGt > 4:1046959/1‑151 (MQ=255)
cggcggAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTc > 8:526323/1‑151 (MQ=255)
cggAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATc < 8:804810/151‑1 (MQ=255)
cggAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATc > 6:901646/1‑151 (MQ=255)
cggAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATc > 2:477399/1‑151 (MQ=255)
cggAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGGCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACATGAAAATTTCAGGGCACAGCCACCATTACCGTCATc < 2:533982/151‑1 (MQ=255)
ggAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCg > 1:160905/1‑151 (MQ=255)
aGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCGTg < 7:1628408/151‑1 (MQ=255)
atatTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCGTGCGGTaaa > 1:1010042/1‑150 (MQ=255)
atTCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCGTGCGGTAAaaga < 6:711764/151‑1 (MQ=255)
tCCTTTTCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCGTGCGGTAAaagaa < 5:268079/150‑1 (MQ=255)
tttCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCGTGCGGTAAAAGAAGACg < 6:1373152/150‑1 (MQ=255)
tttCAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCGTGCGGTAAAAGAAGACGt > 6:840267/1‑151 (MQ=255)
cAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCGTGCGGTAAAAGAAGACGTTgn < 5:305114/151‑2 (MQ=255)
cAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCGTGCGGTAAAAGAAGACGTTGc > 2:1341010/1‑151 (MQ=255)
cAGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCGTGCGGTAAAAGAAGACGTTGc > 7:1218722/1‑151 (MQ=255)
aGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCGTGCGGTAAAAGAAGACGTTGCg < 8:1689385/151‑1 (MQ=255)
aGAACGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCGTGCGGTAAAAGAAGACGTTGCg > 7:322576/1‑151 (MQ=255)
cGGTATCCTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCGTGCGGTAAAAGAAGACGTTGCGtttt > 6:198239/1‑151 (MQ=255)
ccTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCATTTTATCTGGTCGGTGGTGAGCTGGAAAGAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCGTGCGGTAAAAGAAGACGTTGCGTTTTGATTa < 4:1409129/150‑1 (MQ=255)
ccTTCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCGTGCGGTAAAAGAAGACGTTGCGTTTTGATTaa < 4:801284/151‑1 (MQ=255)
ttCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCGTGCGGTAAAAGAAGACGTTGCGTTTTGATTaacg > 1:135927/1‑151 (MQ=255)
tCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCGTGCGGTAAAAGAAGACGTTGCGTTTTGATTaacg < 7:821215/150‑1 (MQ=255)
tCCTGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCGTGCGGTAAAAGAAGACGTTGCGTTTTGATTaacg < 7:1384569/150‑1 (MQ=255)
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GCGCATCGACGGTACAACTGGGGTAGTAGACCAGTACAACCTGGTCGCCAGGCGAAGAAGTTCAGACAATGTGCCCGATGTCGGTATTCGTATTGAAAATCTCGGCGGCGGAGTTGCAAATATTCCTTTTCAGAACGGTATCCTTCCCGTTGATCCTTCCGGGCATGGCACCGTCAATATGCGCGCCTGGCCAGTTAATCTGGTCGGTGGTGAGCTGGAAACAGGAAAATTTCAGGGCACAGCCACCATTACCGTCATCGTGCGGTAAAAGAAGACGTTGCGTTTTGATTAACGCA > NC_000913/3292165‑3292460
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
