Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F84 I10 R1 267 426.1 13521957 97.0% 13116298 150.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,827,026 C→T A606V (GCG→GTG)  recG → ATP‑dependent DNA helicase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,827,0260CT97.8% 1398.5 / 10.4 413A606V (GCG→GTG) recGATP‑dependent DNA helicase
Reads supporting (aligned to +/- strand):  ref base C (5/4);  new base T (177/227);  total (182/231)
Fisher's exact test for biased strand distribution p-value = 5.16e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.27e-01

Only 100 of 421 total aligned reads displayed.

GTTGATGTGCCTAACGCCAGTCTGATGATTATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGCGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTAATGCTGAATTTAAAGTGGCGGATTTACTGCGCGATCA  >  NC_000913/3826878‑3827173
                                                                                                                                                    |                                                                                                                                                   
 ttGATGTGCCTAACGCCAGTCTGATGATTATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGgtgc                                                                                                                                                   >  4:1440584/1‑150 (MQ=255)
    aTGTGCCTAACGCCAGTCTGATGATTATCGAAAACCCGGCGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAAt                                                                                                                                               <  7:286793/151‑1 (MQ=255)
         ccTAACGCCAGTCTGATGATTATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGcc                                                                                                                                          >  4:1255437/1‑151 (MQ=255)
            aaCGCCAGTCTGATGATTATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCt                                                                                                                                         <  5:1665436/149‑1 (MQ=255)
            aaCGCCAGTCTGATGATTATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTg                                                                                                                                        <  4:695874/150‑1 (MQ=255)
            aaCGCCAGTCTGATGATTATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGc                                                                                                                                       <  6:1643951/151‑1 (MQ=255)
             aCGCCAGTCTGATGATTATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGc                                                                                                                                       >  5:977159/1‑150 (MQ=255)
             aCGCCAGTCTGATGATTATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCa                                                                                                                                      <  6:51740/151‑1 (MQ=255)
               gCCAGTCTGATGATTATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAg                                                                                                                                    <  7:1041719/151‑1 (MQ=255)
                 cAGTCTGATGATTATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGtg                                                                                                                                  <  1:1564110/151‑1 (MQ=255)
                   gTCTGATGATTATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGtgct                                                                                                                                >  2:1460417/1‑151 (MQ=255)
                     cTGATGATTATCGAAAACCCGGAGCGACTGGCTCTGGCGCAGTTACACCAGCTCCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGtgctgc                                                                                                                              >  4:233997/1‑151 (MQ=255)
                       gatgatTATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGtgctgc                                                                                                                              <  8:1396677/149‑1 (MQ=255)
                        atgatTATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGcgcg                                                                                                                           >  4:798288/1‑151 (MQ=255)
                         tgatTATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGcgcg                                                                                                                           >  2:93951/1‑150 (MQ=255)
                          gatTATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGAc                                                                                                                         <  6:197426/151‑1 (MQ=255)
                           atTATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTTGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACa                                                                                                                        <  1:733404/151‑1 (MQ=255)
                           atTATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGAc                                                                                                                         >  1:623451/1‑150 (MQ=255)
                            ttATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGAc                                                                                                                         >  5:669400/1‑149 (MQ=255)
                             tATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAg                                                                                                                       <  1:887356/150‑1 (MQ=255)
                                 gAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAacg                                                                                                                  >  5:241769/1‑151 (MQ=255)
                                    aaCCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAacgacg                                                                                                               <  6:1209834/151‑1 (MQ=255)
                                     aCCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACgg                                                                                                              <  6:734309/151‑1 (MQ=255)
                                      cccGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGt                                                                                                             >  5:867582/1‑151 (MQ=255)
                                      cccGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGt                                                                                                             >  8:1634899/1‑151 (MQ=255)
                                       ccGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGtt                                                                                                            <  6:1400075/151‑1 (MQ=255)
                                        cGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGttt                                                                                                           >  2:10067/1‑151 (MQ=255)
                                        cGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGttt                                                                                                           <  5:1422185/151‑1 (MQ=255)
                                          gAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTtg                                                                                                         >  8:1290580/1‑151 (MQ=255)
                                           aGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTtgt                                                                                                        <  2:626130/151‑1 (MQ=255)
                                            gCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTtgtg                                                                                                       >  7:1321904/1‑151 (MQ=255)
                                              gtctgggtctggCGCAGGTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGAt                                                                                                     <  6:854581/151‑1 (MQ=255)
                                                 tgggtctggCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTgc                                                                                                  >  4:363703/1‑151 (MQ=255)
                                                    gtctggCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTgcgc                                                                                                >  2:1593266/1‑150 (MQ=255)
                                                        ggCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCaaa                                                                                             <  6:299054/149‑1 (MQ=255)
                                                        ggCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCaa                                                                                              <  6:1476013/148‑1 (MQ=255)
                                                        ggCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCaa                                                                                              <  5:593368/148‑1 (MQ=255)
                                                        ggCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCaa                                                                                              <  2:352312/148‑1 (MQ=255)
                                                         gcgcAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAg                                                                                          <  2:909021/151‑1 (MQ=255)
                                                           gcAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCaaaa                                                                                            >  5:928454/1‑147 (MQ=255)
                                                           gcAGTGACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGAt                                                                                        <  2:502180/151‑1 (MQ=255)
                                                             aGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCt                                                                                      <  4:573959/151‑1 (MQ=255)
                                                                 acacCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTggn                                                                                   <  8:658607/150‑2 (MQ=255)
                                                                 acacCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGga                                                                                   <  6:426270/150‑1 (MQ=255)
                                                                  cacCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGgaga                                                                                 <  2:1093986/151‑1 (MQ=255)
                                                                   acCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGAt                                                                                <  3:790162/151‑1 (MQ=255)
                                                                     cAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTc                                                                              <  4:1158721/151‑1 (MQ=255)
                                                                     cAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGATTCTCACTCCGTCCTGCTCTACAAAACGCCGCTTTCTAAAACGCTGCAAATTAGCCTGCAAGTGCTGCGCGACAGTAACCACGCTTTTGTGATTGCGCAAAAAGATCTGGAGAtt                                                                               >  2:835113/1‑150 (MQ=255)
                                                                      aGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTcg                                                                             <  3:10110/151‑1 (MQ=255)
                                                                      aGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTcg                                                                             <  5:1083824/151‑1 (MQ=255)
                                                                       gCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTcgc                                                                            >  6:1350850/1‑151 (MQ=255)
                                                                          gcgcGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGc                                                                         <  8:902140/151‑1 (MQ=255)
                                                                           cgcgGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGcc                                                                        >  5:744376/1‑151 (MQ=255)
                                                                            gcgGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGccc                                                                       <  7:755774/151‑1 (MQ=255)
                                                                             ggggCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCt                                                                      <  7:823404/150‑1 (MQ=255)
                                                                             cgGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCACt                                                                      >  6:1292674/1‑151 (MQ=255)
                                                                              gggCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTg                                                                     >  5:400753/1‑151 (MQ=255)
                                                                              gggCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTg                                                                     >  4:1566647/1‑151 (MQ=255)
                                                                                gcgcGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGc                                                                   >  1:429709/1‑151 (MQ=255)
                                                                                 cgcgTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCg                                                                  >  1:491767/1‑151 (MQ=255)
                                                                                  gcgTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCg                                                                  >  7:1207541/1‑150 (MQ=255)
                                                                                    gTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAAt                                                               >  8:405482/1‑151 (MQ=255)
                                                                                     tAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAAtt                                                              >  8:1070705/1‑151 (MQ=255)
                                                                                      aGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTg                                                             >  3:723969/1‑151 (MQ=255)
                                                                                      aGGTCGTGGCGCGATGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTg                                                             <  2:1334624/151‑1 (MQ=255)
                                                                                          cGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTa                                                          <  4:921939/150‑1 (MQ=255)
                                                                                           gTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAACCGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAgg                                                        <  3:511919/151‑1 (MQ=255)
                                                                                           gTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAgg                                                        <  2:251580/151‑1 (MQ=255)
                                                                                            tGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGc                                                       >  8:1011381/1‑151 (MQ=255)
                                                                                               gtgggTGTCGTCTCACTCCGTGCTGCTATACAAACCGCCGCTTTCTAAACCGTTGCAAATTCGCTTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTCCGAAAAAACATCTGCACATTCGCGGCCCTGCCGAATTGTTAGGCAcg                                                    <  8:1204056/148‑1 (MQ=255)
                                                                                                gcgGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAACCGGTGCAAATTCGTCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCAcgc                                                   <  2:457805/151‑1 (MQ=255)
                                                                                                gcgGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCAcgc                                                   <  8:518432/151‑1 (MQ=255)
                                                                                                  ggTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGt                                                 <  2:1172996/151‑1 (MQ=255)
                                                                                                     ggCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTc                                                >  6:1120726/1‑149 (MQ=255)
                                                                                                     ggCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCa                                               <  7:492272/150‑1 (MQ=255)
                                                                                                       cTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGAc                                            >  1:1013998/1‑151 (MQ=255)
                                                                                                         tctcACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACg                                           <  7:1564612/150‑1 (MQ=255)
                                                                                                         tctcACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTACGAACGCGTCAGACgg                                          >  1:1447729/1‑151 (MQ=255)
                                                                                                         gctcACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACgg                                          <  5:1227969/150‑1 (MQ=255)
                                                                                                            cACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGCGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTa                                       <  3:1172958/151‑1 (MQ=255)
                                                                                                             aCTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTaa                                      <  5:1340739/151‑1 (MQ=255)
                                                                                                             aCTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTaa                                      <  1:1498859/151‑1 (MQ=255)
                                                                                                                gCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTAATGc                                   <  4:405117/151‑1 (MQ=255)
                                                                                                                  gTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTAATGCTg                                 <  1:281644/151‑1 (MQ=255)
                                                                                                                  gTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTAATGCTg                                 >  1:1128494/1‑151 (MQ=255)
                                                                                                                     ctgctATACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATAGTTAGGCACGCGTCAGACGGGTAATGCTGAAt                              >  3:884278/1‑151 (MQ=255)
                                                                                                                      tgctCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTAATGCTGAAtt                             >  1:128971/1‑151 (MQ=255)
                                                                                                                       gctCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTAATGCTGAAtt                             <  3:925692/150‑1 (MQ=255)
                                                                                                                       gctCTACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTAATGCTGAAt                              <  7:642451/149‑1 (MQ=255)
                                                                                                                           tACAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTAATGCTGAATTTaa                          >  3:1438667/1‑149 (MQ=255)
                                                                                                                            aCAAAACGCCGCTTTCTAAAACTGTTCAAATTCTCCTGCAAGTTCTGATAGACAGTTACTAATGTTTTGTTATTTCGAAAAAAGATCTGGAGATTCGCTTCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTAATGCTGAATTTa                           <  4:487795/147‑1 (MQ=255)
                                                                                                                             cAAAACGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTAATGCTGAATTTAAAGTg                      >  6:5861/1‑151 (MQ=255)
                                                                                                                             aaaaaCGCCGGTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTAATGCTGAATTTAAAGTg                      <  5:1506873/150‑1 (MQ=255)
                                                                                                                               aaaCGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTAATGCTGAATTTAAAGTGGc                    <  3:1066863/151‑1 (MQ=255)
                                                                                                                                aaCGCCGCTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTAATGCTGAATTTAAAGTGGCg                   <  4:1064771/151‑1 (MQ=255)
                                                                                                                                    ccgcTTTCTAAAACGCTGCAAAATCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTAATGCTGAATTTAAAGTGGCGGAtt               <  6:904711/151‑1 (MQ=255)
                                                                                                                                      gcTTTCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTAATGCTGAATTTAAAGTGGCGGATTTa             <  8:256112/151‑1 (MQ=255)
                                                                                                                                         ttCTAAAACGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTAATGCTGAATTTAAAGTGGCGGATTTACTg          >  3:153868/1‑151 (MQ=255)
                                                                                                                                              aaaCGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTAATGCTGAATTTAAAGTGGCGGATTTACTGcgcg      >  3:178567/1‑150 (MQ=255)
                                                                                                                                               aaCGGTGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTAATGCTGAATTTAAAGTGGCGGATTTACTGCGCGAt    <  3:282995/151‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
GTTGATGTGCCTAACGCCAGTCTGATGATTATCGAAAACCCGGAGCGTCTGGGTCTGGCGCAGTTACACCAGCTGCGCGGGCGCGTAGGTCGTGGCGCGGTGGCTTCTCACTGCGTGCTGCTCTACAAAACGCCGCTTTCTAAAACGGCGCAAATTCGCCTGCAAGTGCTGCGCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGATTCGCGGCCCTGGCGAATTGTTAGGCACGCGTCAGACGGGTAATGCTGAATTTAAAGTGGCGGATTTACTGCGCGATCA  >  NC_000913/3826878‑3827173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A