Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F84 I10 R1 267 426.1 13521957 97.0% 13116298 150.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,938,441 Δ1 bp coding (215/993 nt) rbsR → transcriptional repressor of ribose metabolism

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,938,4400C.96.0% 2117.8 / 88.2 483coding (214/993 nt)rbsRtranscriptional repressor of ribose metabolism
Reads supporting (aligned to +/- strand):  ref base C (12/7);  new base . (218/243);  total (232/251)
Fisher's exact test for biased strand distribution p-value = 2.41e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 490 total aligned reads displayed.

ATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTG  >  NC_000913/3938290‑3938586
                                                                                                                                                      |                                                                                                                                                  
aTCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATc                                                                                                                                                    <  4:1265823/151‑1 (MQ=255)
  cAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATctt                                                                                                                                                  <  4:37313/151‑3 (MQ=255)
            cGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGa                                                                                                                                       <  5:416515/151‑1 (MQ=255)
             gCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGa                                                                                                                                       >  5:1138819/1‑150 (MQ=255)
             gCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGa                                                                                                                                       >  7:1112685/1‑150 (MQ=255)
             gCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGa                                                                                                                                       >  6:1500564/1‑150 (MQ=255)
              cTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAAc                                                                                                                                     >  8:81435/1‑151 (MQ=255)
                tCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTg                                                                                                                                   >  3:249854/1‑151 (MQ=255)
                 cGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTg                                                                                                                                   <  7:652187/150‑1 (MQ=255)
                 cGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCAATGGCATGTTGATCACTGCCAGTACAAAT‑CTTTCTATTCAGAACTgg                                                                                                                                  >  4:1327134/1‑151 (MQ=255)
                    cAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTg                                                                                                                                <  2:1470841/150‑1 (MQ=255)
                       tGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTg                                                                                                                            >  3:683335/1‑151 (MQ=255)
                        gAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTgg                                                                                                                           <  4:1648279/151‑1 (MQ=255)
                        gAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTgg                                                                                                                           <  8:659014/151‑1 (MQ=255)
                        gAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTgg                                                                                                                           <  1:1267353/151‑1 (MQ=255)
                          aGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCg                                                                                                                         <  6:602811/151‑1 (MQ=255)
                           gCGATTACCGCCAACGTGGAAGCGGCGATTAAACAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGt                                                                                                                        <  6:255988/151‑1 (MQ=255)
                            cGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGtt                                                                                                                       <  1:1192899/151‑1 (MQ=255)
                            cGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACAGCCACTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGtt                                                                                                                       >  2:860590/1‑151 (MQ=255)
                                   cGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGc                                                                                                                 >  8:776557/1‑150 (MQ=255)
                                       aaaGGTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATCCCATTGGCATGGTGATCACTGCCAGTACCAA‑GCTCTCTATTCAGAACTGGTGCGTGGAGTTGAACCCAgctc                                                                                                            >  8:1098923/1‑150 (MQ=255)
                                        aaGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAgctgc                                                                                                           >  5:1580971/1‑151 (MQ=255)
                                         aGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAgctgct                                                                                                          >  4:57645/1‑151 (MQ=255)
                                            tGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTc                                                                                                        <  1:1356936/150‑1 (MQ=255)
                                              aaGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGaa                                                                                                     <  6:1405732/151‑1 (MQ=255)
                                                gcggcgATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAAc                                                                                                    <  7:800035/151‑1 (MQ=255)
                                                 cggcgATTAAAGATCTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAACCACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAAcgc                                                                                                  >  4:943413/1‑151 (MQ=255)
                                                  ggcgATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAAcgcg                                                                                                 <  7:1014949/151‑1 (MQ=255)
                                                  ggcgATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAAcgcg                                                                                                 <  1:1557019/151‑1 (MQ=255)
                                                  ggcgATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAAcgcg                                                                                                 <  1:614384/151‑1 (MQ=255)
                                                   gcgATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCgg                                                                                                >  3:885036/1‑151 (MQ=255)
                                                      aTTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGttt                                                                                             >  4:442594/1‑150 (MQ=255)
                                                        tAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTtat                                                                                            <  8:1369515/150‑1 (MQ=255)
                                                          aaGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGt                                                                                         <  5:1362073/151‑1 (MQ=255)
                                                             aaCTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGtctc                                                                                      >  5:562763/1‑151 (MQ=255)
                                                             aaCTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTAGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGGGGTTATAGtctc                                                                                      >  8:949514/1‑151 (MQ=255)
                                                                 cAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTc                                                                                   <  7:1437912/150‑1 (MQ=255)
                                                                 cAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTc                                                                                   <  2:613845/150‑1 (MQ=255)
                                                                 cAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTc                                                                                   <  8:119514/150‑1 (MQ=255)
                                                                  aaTTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCt                                                                                 <  7:319614/151‑1 (MQ=255)
                                                                       cgcgCCATCATCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCa                                                                            <  8:534651/151‑1 (MQ=255)
                                                                       cgcgCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCa                                                                            <  1:1654321/151‑1 (MQ=255)
                                                                        gcgcCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCaa                                                                           <  5:722028/151‑1 (MQ=255)
                                                                        gcgcCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCaa                                                                           <  7:170257/151‑1 (MQ=255)
                                                                        gcgcCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCa                                                                            >  6:521064/1‑150 (MQ=255)
                                                                         cgcCATCACCTCTGGCGCGTAGCCTCTAACTCAATCAAACACATACGATTGGCATGTTGATCACTGCGAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAAGGCAGCTGCTTCGAAGGGGGTTATAGTCTCGTCCTTTGCAAt                                                                          <  3:560269/151‑1 (MQ=255)
                                                                          gcaaTCAGATCTCGCGCGTACCCTCAAACTCAATCAAACACATACCATTGGCAACTTCATCACTGCCAGAACCAA‑ACATACTATTCAGAACTCGTGCGAGCCCTAGAACGCAGCTGCTTCGAACGCGCTTATACTCtcctccgatccaat                                                                          >  6:334968/4‑142 (MQ=255)
                                                                          gcCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAAt                                                                          >  8:239172/1‑150 (MQ=255)
                                                                           ccATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATAc                                                                        <  3:762740/151‑1 (MQ=255)
                                                                               cAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGa                                                                     >  2:1137281/1‑150 (MQ=255)
                                                                               cAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGa                                                                     <  3:135335/150‑1 (MQ=255)
                                                                                aGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGa                                                                     >  7:595984/1‑149 (MQ=255)
                                                                                    ctGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGc                                                                 <  1:1026429/149‑1 (MQ=255)
                                                                                    ctGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCg                                                                >  6:849296/1‑150 (MQ=255)
                                                                                      ggCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTCGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGAt                                                              <  5:911096/150‑1 (MQ=255)
                                                                                         gcgTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAAc                                                          >  4:1437794/1‑151 (MQ=255)
                                                                                          cgTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGAGCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGGGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACa                                                         <  6:1054957/151‑1 (MQ=255)
                                                                                           gTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAg                                                        <  5:1048134/151‑1 (MQ=255)
                                                                                             aGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGc                                                       <  4:751403/150‑1 (MQ=255)
                                                                                               ccTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCgg                                                     >  5:644634/1‑150 (MQ=255)
                                                                                                  cAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATg                                                  >  7:40966/1‑150 (MQ=255)
                                                                                                   aaaCTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGa                                                 >  4:1032044/1‑150 (MQ=255)
                                                                                                     aCTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAAt                                               >  3:1161840/1‑151 (MQ=255)
                                                                                                       tcaatcaaACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGc                                            >  1:501711/1‑151 (MQ=255)
                                                                                                       tcaatcaaACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGc                                            >  7:490830/1‑151 (MQ=255)
                                                                                                        caatcaaACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCa                                           <  6:674812/151‑1 (MQ=255)
                                                                                                         aatcaaACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCa                                           >  7:554791/1‑150 (MQ=255)
                                                                                                            caaACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATc                                        <  1:221796/150‑1 (MQ=255)
                                                                                                            caaACACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCt                                       <  5:840751/151‑1 (MQ=255)
                                                                                                             aaaCACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTg                                      >  1:83652/1‑151 (MQ=255)
                                                                                                             aaaCACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTCGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTg                                      >  5:186407/1‑151 (MQ=255)
                                                                                                              aaCACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGTACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGCCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTgg                                     <  4:1176091/151‑1 (MQ=255)
                                                                                                              aaCACATACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTgg                                     >  5:1437916/1‑151 (MQ=255)
                                                                                                                cacaTACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGa                                    >  3:1590327/1‑150 (MQ=255)
                                                                                                                 acaTACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGATTCGCAATCTGGaa                                   >  2:102789/1‑150 (MQ=255)
                                                                                                                 acaTACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGaaa                                  <  2:810283/151‑1 (MQ=255)
                                                                                                                   attccATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACg                                >  3:1482266/4‑151 (MQ=255)
                                                                                                                   aTACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACg                                <  7:159094/151‑1 (MQ=255)
                                                                                                                   aTACCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACg                                <  3:1679363/151‑1 (MQ=255)
                                                                                                                     aCCATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCt                              >  2:509820/1‑151 (MQ=255)
                                                                                                                       cATTGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGa                            <  2:322741/151‑1 (MQ=255)
                                                                                                                          tGGCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGc                         >  2:1660979/1‑151 (MQ=255)
                                                                                                                           ggCATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGc                         <  3:1004562/150‑1 (MQ=255)
                                                                                                                             cATGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCaaa                      <  2:158194/151‑1 (MQ=255)
                                                                                                                              aTGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCaaaa                     <  3:41633/151‑1 (MQ=255)
                                                                                                                              aTGTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCaaa                      >  7:219362/1‑150 (MQ=255)
                                                                                                                                gTTGATCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCAAAAAc                   <  6:401728/151‑1 (MQ=255)
                                                                                                                                    aTCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCAAAAACGCGt               >  4:159204/1‑151 (MQ=255)
                                                                                                                                     tCACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCAAAAACGCGtt              >  3:120185/1‑151 (MQ=255)
                                                                                                                                      cACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCAAAAACGCGtt              <  6:1673887/150‑1 (MQ=255)
                                                                                                                                      cACTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCAAAAACGCGTTg             >  2:1312878/1‑151 (MQ=255)
                                                                                                                                       aCTGCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCAAAAACGCGTTg             >  2:1233994/1‑150 (MQ=255)
                                                                                                                                          gCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCAAAAACGCGTTGAt           <  8:450956/149‑1 (MQ=255)
                                                                                                                                          gCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCAAAAACGCGTTGATgg         <  2:699333/151‑1 (MQ=255)
                                                                                                                                          gCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCAAAAACGCGTTGATgg         <  3:957361/151‑1 (MQ=255)
                                                                                                                                          gCCAGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCAAAAACGCGTTGATgg         >  6:1249806/1‑151 (MQ=255)
                                                                                                                                             aGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCAAAAACGCGTTGATGGCtt      <  8:1627276/151‑1 (MQ=255)
                                                                                                                                             aGTACCAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCAAAAACGCGTTGATGGCtt      <  1:1452002/151‑1 (MQ=255)
                                                                                                                                               tACCAAT‑CTTTCTATTCAGTTCTGGTGCGTGGCTTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACTGAAGGCGATGAACAGCGGATGAATCTCAATCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTg     <  7:982193/150‑1 (MQ=255)
                                                                                                                                                 ccAAT‑CTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACTCTGATGCAAAAACGCGTTGATGGCTTGCTg  <  8:1477955/151‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                  
ATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTG  >  NC_000913/3938290‑3938586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A