Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F84 I10 R1
|
267 |
426.1 |
13521957 |
97.0% |
13116298 |
150.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,296,187 |
C→T |
intergenic (+393/+249) |
gltP → / ← yjcO |
glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,296,187 | 0 | C | T | 83.6%
| 75.4
/ 16.4
| 68 | intergenic (+393/+249) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base C (3/6); new base T (27/19); total (42/26) |
| Fisher's exact test for biased strand distribution p-value = 2.73e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.59e-01 |
TTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCA > NC_000913/4296039‑4296336
|
ttACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGttt > 3:188834/1‑151 (MQ=25)
ttACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAGGCCGCATCCGACATCAACGCCTGATGCGACGGtt > 8:1152635/1‑151 (MQ=25)
ataccccccccccGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCtt < 8:1407317/140‑1 (MQ=255)
tACGCCGCATCCGACATCAACGCCTGATGCGACGCTTCCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCtt < 1:1578639/150‑1 (MQ=18)
accccgcACCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTa < 7:868895/147‑1 (MQ=16)
aCGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTa < 3:1213556/150‑1 (MQ=25)
aCGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAAAGCCTGATGCGACGTTTac > 8:314232/1‑150 (MQ=25)
aCGCCGCATCAGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTa > 5:1373588/1‑150 (MQ=25)
aCGCCGCATACGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTa < 7:793035/150‑1 (MQ=25)
cgccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAAc > 6:1221543/1‑151 (MQ=21)
cgccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAAc < 5:397072/151‑1 (MQ=21)
gccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCAGCATCCGACATCAACGCCTGATGCGACGTTTAAcg > 6:592274/1‑151 (MQ=18)
gccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAAGCCACATCCGAAAACAACCCATTATGCGAAGATTAAcg > 1:1405845/1‑151 (MQ=11)
gccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAGTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAAcg > 7:1178121/1‑151 (MQ=18)
gccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAAGAAACACAGCGCAATATAATTATTTAGCGTGATTTTCTATGTCACAAAAGTCCTTTAAGCAGAATAACACAACAAAGCCTGAAGAGACGATTaaa > 2:814205/1‑149 (MQ=2)
ccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAAcgc > 5:1219040/1‑151 (MQ=18)
ccgcATCCGACATCAACGCCTGATGCGAAGCTTGCCGCGTCTTATAAGGCATACGACACACAGCTCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGCCATCAACGCCTGATGCGACGGTTACcgc > 7:667381/1‑151 (MQ=11)
cgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAAcgcg > 1:94862/1‑151 (MQ=18)
cgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAAcgcg > 3:1563210/1‑151 (MQ=18)
cgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAAGAAAGACAGAGCAATAGACTGATTTAGCTTGAATTTGTATGTCGGATAAGGCTATTATGACGCATCCGACATCAAAGCCTGATGCGACGTTTTAcgcg > 4:1530185/1‑151 (MQ=11)
cgcATCCGACAGCAACGCCTTATTCGACGCTTTCCGTTTCTTATCAGGACTATGTTAGTATGTGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAAcgcg < 2:1110956/151‑1 (MQ=11)
ggagaattattgaaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGt < 4:589822/139‑1 (MQ=2)
gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGt > 2:459649/1‑151 (MQ=18)
gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGt < 1:1212381/151‑1 (MQ=18)
gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCAAGACAGCGCAATAGCATGATGTAGAGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCTCATCAGACATCACCGCCTGATGCGACGTTAAAAGCGt > 2:908165/1‑151 (MQ=11)
gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACCACAGACAGCGCAATAGCATGATTTAGCGGGATTTTGTAGGTCGGATAAGGCGATTATGCCGCATCCGACATCAAAGCCTGATGCGACGATTAAcgcg > 6:189634/1‑150 (MQ=11)
cATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACTCGTc > 4:700816/1‑151 (MQ=18)
cATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGtg > 1:440235/1‑150 (MQ=18)
cATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGt > 2:1412964/1‑150 (MQ=18)
cATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGt > 1:623571/1‑150 (MQ=18)
cATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCCTTTAAGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGTc > 4:731665/1‑151 (MQ=16)
aaTCCGAGAGCAACGCGTGATGCGCCGCTGGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCAGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGTc < 8:1363432/150‑1 (MQ=11)
atcgtaaatgaaCTCCAGATGCGTCGTCTTCCGAGCCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCTGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt < 7:1590442/141‑1 (MQ=11)
atactaCATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGTCt < 5:1333137/146‑1 (MQ=18)
aTCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGAGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGACGCATCCGACATCAAATCATGATGCGACGATTAACGCGTCt > 2:1538717/1‑151 (MQ=11)
aTCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGACAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGTCt > 1:361620/1‑151 (MQ=18)
aTCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAAGAAAGACAGAGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACTCCTGATGCGACGTTTAACGCTTCt > 1:104525/1‑151 (MQ=11)
ttctaaattaaCGCGTGATGCTACGATTTCTTCTTATTATGAGTCCTACTTTAGATACCGGAATATCTTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGTCt < 6:1110494/141‑1 (MQ=2)
tCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGAAAGACAGCGCTATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGTCtt > 2:630619/1‑151 (MQ=255)
ccGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGATTAACGCGTCtt > 7:648556/1‑150 (MQ=18)
cGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGGTTACCGCGTCTTAt > 5:1394364/1‑151 (MQ=18)
gacagccccGCCGGATGCGCCGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGTCTTATc < 5:1127497/143‑1 (MQ=11)
gACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCTGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGTGACGTTTAACGCGTCTTATc > 8:812919/1‑151 (MQ=16)
gACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGTCTTATc > 8:1626128/1‑151 (MQ=18)
gACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGTCTTATc > 3:1392133/1‑151 (MQ=18)
gACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGTCTTATc > 7:433563/1‑151 (MQ=18)
gACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAAAGCCTGATGCGACGGTTAACGCGTCTTATc > 3:1031941/1‑151 (MQ=18)
gattCAAGGCCTGATGCGAGGCTTGCCGCGTCTTATCAGGCCTACGCCATACAGCTCAATACCATGATTTAGCTTGATTTTTTATCTAGGCTAAGGCGTTTATTCCGCATCCTACATCAACGCCTGATGCGACGTTTAACGCGTCTTATCa < 8:1021716/148‑1 (MQ=11)
aCATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGATTAACGCGTCTTATc > 5:593607/1‑150 (MQ=18)
cATCAACGCCTGATGCGACGCTTTCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGTCTTATCAg < 6:624200/151‑1 (MQ=14)
cATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCAGCATCAGACATCAACGCCTGATGCGAAGTTTAACGCGTCTTATc > 2:1043439/1‑149 (MQ=255)
aTCAACGCCTGATGCGACGCTTTCCGCGTCTTATCAGGCCTACGCCAGACAGCTCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGTCTTATCAg < 4:467898/150‑1 (MQ=9)
aTCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGTCTTATCAgg < 5:122607/151‑1 (MQ=18)
tCAACTCCTGTCTCGACTCTTGCTGCTTCTTATCAGCACTTCGCCAGACAGCCCAATAGCCTTATTTAGCGTGATTTTGTAGGTCTGATAAGGCGTTTATGCCGCATCCGACATCAACTCCTGATGCGACGTTTAACGCGTCTTATCAgg < 7:1020934/150‑1 (MQ=11)
cAACTCCGGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGTCTTATCAGGcc < 2:368480/151‑1 (MQ=9)
cAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAACCAAGACAGCGCAATAGCATGAATTAGCGTCAATTTGTAGCTCGGATAAGGCGTTTATGCCGCATCCGACATCAAAGCCTGATCCGACGATTACCGCGTCTTATCATGc > 4:1308303/1‑150 (MQ=11)
cAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAACAGAGACAGCGCAATAGACTTAAATATCGTGATTTAGTAGGTCAGATAAGTCGTTAAAACCTCATAAGACATCAAAGCATGATGCGACGGTTACAGAGTCTTATCAggac > 2:1459307/1‑149 (MQ=2)
aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGTCTTATCAGGCCt < 1:194837/151‑1 (MQ=14)
aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCATATAAGGCGTTTATTCCGCATAAAAAATCAACGCCTGATGCGACGTTTAACGCGTCTTATCatgaat > 2:1627142/1‑146 (MQ=11)
aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGGGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCGGATGCGACGTTTAACGCGTCTTATCAGGCCt > 8:550519/1‑151 (MQ=9)
cGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGTCTTATCAGGCCTAc > 8:1343774/1‑151 (MQ=11)
cGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGGGATTTTGTAGGTCGGAGAAGGCGTTTATGCCGCATCCGTCATGAACGCCTGATGCGACGTTTAACGCGTCTTATCAGGCCTAc < 7:56050/151‑1 (MQ=2)
accccgtgaaccccGCATCCGACATCCAAGCCGGAGACTCGCCTTCAGCCGTCTTATCAGGCCAACTCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATg < 3:1060888/138‑1 (MQ=11)
gTTTATTCCTAATCCGACATCAACGCCTGATTCTACTCTTGACGCTTCTTATCAGTACTACTCCAGTCAGCTCTATAGATTTATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACgt < 4:48714/151‑2 (MQ=11)
ccGCATCCGACATCAACTCCTGATGCTACGATTTACGCTTCTTATCAGTCCTACTCCAGACAGAGCAATAGCGTGATTTATCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAAcgc < 4:368060/151‑1 (MQ=11)
aTCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGAGATTTTGTAGCTCGGATAAGGCCTTTAAGCCGCATCCGACATCAACGCCTGATGCGACGGTTTACGCGTCTTATCAgg > 3:322285/1‑151 (MQ=11)
ccTGATGCGACGCTTCACGCGTCTTATCAGGCCTACGCCATACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGTTTAACGCGTCTTATCAGGCCTACGc < 2:241790/151‑1 (MQ=9)
cGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGGCTGATTTAGCGTTATTTTGTAGGTCGGATAAGGCGTTTACTCAGCATCCGACATCAACGCCTGATGCGACGATTAAAGCGTCTTATCAGGCCTACGCCAGAc > 1:1194409/1‑149 (MQ=11)
gCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGCATAAGCGTGCTTGTGTAGGTCGGATAAGTCGGTAAAGACGCAGCCGACAGCACCCCCGGCGGAGAAGCTAAACGCGTCTTAGCAGGCCGACGCCAGCCCgcgcc > 8:1690587/1‑150 (MQ=2)
|
TTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCA > NC_000913/4296039‑4296336
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
