Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F90 I5 R1
|
24 |
61.2 |
1135137 |
88.5% |
1004596 |
286.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,621,022 |
C→A |
R39L (CGC→CTC) |
eamA ← |
cysteine and O‑acetyl‑L‑serine efflux system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,621,022 | 0 | C | A | 98.2%
| 174.6
/ NA
| 57 | R39L (CGC→CTC) | eamA | cysteine and O‑acetyl‑L‑serine efflux system |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base A (29/27); minor base T (1/0); total (30/27) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
ACTATCTTCGATTAACACCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAGTCCAGCAGGCATACCGAAGTTAATGGCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGCGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGGTTACGACGGCATTAATGCGCAAATAAGTCGCTATACTTCGGATTTTTGCCATGCTATTTCTTTACATCTCTAAAACAAAACATAACGAAACGCACT > NC_000913/1620736‑1621318
|
aCTATATTCGATTAACACCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAGTCCAGCAGGCATACCGAAGTTAATGGCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGc < 1:54149/301‑1 (MQ=255)
cacCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCACCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAGTCCAGCAGGCATACCGAAGTTAATGGCACAAAAAAGAAAAGCAAACTGCGCAAAAATGATGGTTAATCCAAACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTTCGTCAAAAACGATAGCCGGAAAAGCGAACAGGAAAAACAAAAACCCGGCCAACAtatggctgggacac > 2:96816/1‑288 (MQ=255)
cAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAGTCCAGCAGGCATACCGAAGTTAATGGCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGACATGTTa < 1:381362/301‑1 (MQ=255)
cccAAATATCACTAAGGCCGTCCCCGCCAATTGTGTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGGGCCTGTAACACCAGCGAAGCCAGTCCAGCAGGCATACCGAAGTTAATGGCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGc < 1:478535/300‑1 (MQ=255)
gCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAGTCCAGCAGGCATACCGAAGTTAATGGCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACACCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGAAAAAGCGACCAGAATAAAGAACAAACCGGCCAACATCAACAGTGGCAGGTTATAAAGTCCCCCTGTGATGACCACAAAATTCAGCCCCCAttcc > 2:442456/1‑298 (MQ=255)
gAAAGTAAACGCGCCAATCAAGAAAGTAAAAAACGCCTGTGCCTGTAAAACCAGCAAAGCCAGTCCAGCAGGCATACCGAAGTTAATGGCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAAGTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACca < 2:532412/263‑1 (MQ=255)
aaaCGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAGTCCAGCAGGCATACCGAAGGTACTGGCAAAAGAAAGAACAGCACACTGCGCACAACTGATGGTTAATCCAAACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGAGACCAGCATAAAGAGCAAACCGGACAGCATACGCGGTGGCATGGTATGACACCCCACTATCATGAAAACAAAAGTTATCCACCATCCAACCAACACCAGTaacaccaacacc > 2:296279/1‑301 (MQ=255)
tAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAGTCCAGCAGGCATACCGAAGTTAATGGCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGCGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATATAGCCCCCATACAACCCCTACCAGTCGCGACAACACCCCATCTTTTcgcccacttcc > 2:335228/1‑293 (MQ=255)
aaaaaaCGCCTGTGCCTGTAACACCAGCGAAGCCAGTCCAGCAGGCATACCGAAGTTAATGGCACAAACAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCCGCATCAGCGGTGGCATGTTCTGAAGCCCCACTATGATGACCACAAAATTTAGCCACATTACGACCACTACCAGTCGCGGCAAACCCACATCTTCTcgccaaatcccc > 2:547456/1‑292 (MQ=255)
gcccggacctgtAAAACCAGCCAAGCCAGTCCAGCAGGAAAACCGAACTTAATGGCACCAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCctc < 1:96835/294‑1 (MQ=255)
gtAACACCAGCGAAGCCAGTCCAGCAGGCATACCGAAGTTAATGGCACAAAAAAGAAAAGCAAACGGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCAt < 1:255076/301‑1 (MQ=255)
aaCACCAGCGAAGCCAGTCCAGCAGGCATACCGAAGTTAATGACACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGACAGCATCAGCGGTGGCATGTTATGACGCCCCACTTTGATGACCACAAAATTTAGCACCCATACGACCACTACCAGTAGCGCCAACACACCATCTTTTAGCGACATTCTACCGCCTCTGAATTTCATCt > 1:37542/1‑301 (MQ=255)
aaGCCAGTCCAGCAAGCATCCCGAAGTTAATGGCACAAAAAAGAAAAGCAAACCGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCa < 1:442564/301‑1 (MQ=255)
gCNAGTCCNGNNNNNNNNNNNNAGTTAATGNANAAAAAAAGANNANCAAACGGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACAcccc < 1:45382/251‑1 (MQ=255)
cAGTCCAGCAGGCATACCGAAGTTAATGGCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCCTCTTTTGTAACCAATc > 1:364369/1‑300 (MQ=255)
ccGAAGTTAATGGCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCCGCGGTGGCATGTTATGAAGACCCACTTTGATGACCACAAAATTTAGCTCACATACGACCACTAACAGTAGCGCAAACACCCAACCTTTTCGCGCCATTCTACAGACTCTCAATTTCATCTTTTATAACTAATCAACtgtatgtaatttat > 2:495555/1‑288 (MQ=255)
cGAAGTTAATGGCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATa < 1:311209/204‑1 (MQ=255)
cGAAGTTAATGGCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGATAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAACAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATa > 2:311125/1‑204 (MQ=255)
cGAAGTTAATGGCAAAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCCGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGTAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACt < 1:547586/301‑1 (MQ=255)
gAAGTTAATGGCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGAACACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTAc > 1:187527/1‑251 (MQ=255)
aaTGGCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCAACTTTGATGACCACAACATGTAGCCCCCATAAGACCACAACCAGTAGCGCCAACACCCCCTCGTTTCGCAACATCCAACCGCCTCTGAATTCCATCCTTTTTACACAATCCAATTAGCTGATTTAACtttttttt > 2:449878/1‑301 (MQ=255)
aTGGCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTAAGTGGTACTTTCGGTCGTGCGACAAAGAAGATAGCCGGAAAAGCGACCAGCATAAAGTGCCAACAGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACGCAAAAATTTAGCCCCCAGACGACGACTACCGTTAGCGCCAACACCAAGTCTTTTCGCGTCATGATACCGTCTCGAAAGTTCATTTTATTTAGCAAATCAACTATGCTCAAATTACTTGTCattt > 1:292903/1‑300 (MQ=255)
ggCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCACCCATACCACCACTAACAGTAGCGCCAACAACCCCTCTTTTCGCGACATTCTACAGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTaat > 1:16383/1‑300 (MQ=255)
gCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGCTGACCACAAAATTTAGCCCCAATACCACCACTACCAGTAGCCCCAACACCCCATCTTTCCGCGACATTCTACCGCCTCTGAATTTCATCCTTTGTAAGCCACCAACTTAGCTGAATTTCCTTTTCTTTCAc > 2:251418/1‑300 (MQ=255)
caaacaaaagaaaagCAACCTGCGAAAAACGGATGGTTATCCCAAACCCAAACAGCAAAATAAGAGGTACGTGCGGTCGTGAGACAACAAAGATAGCCGGAAAAGCAACAAGCATAAAGAGCAAACCAGACAGCATCAGCGGTGGCATGTTATGCAGCCCCCCTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAg < 2:232278/296‑1 (MQ=255)
agaaaagCAAACAGCGCAAAACTGAAGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCTGGGGCATGTTATGAAGCCCCACTTTGATGACCACAACATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCg < 1:296362/301‑1 (MQ=255)
aaaaCAAACTGCGCAAAACTGATAGTTAGACCATACCCCAGCAGCAAATTAAGTGGTACTTTCTGTCGCGCAACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTa < 2:37538/301‑1 (MQ=255)
gCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTc > 1:132180/1‑301 (MQ=255)
gcgcAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTAATTTTCTTTAACCGTTGATTCTTTAGTTGCCGGtt > 1:403650/1‑301 (MQ=255)
cAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACACAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACACCATCCTTTCCCGACATTCTACCGCCTATGAATTGCCTCTTTTTTAAGCAATCACCTTGGTTGAATTTACTTTTCTTTTAAAGTTTAttattatgtcgtcggtgtac > 2:421225/1‑283 (MQ=255)
aaaCTGATGGGTAATCCAAACCCCATCAGCAAAGTAAGTTGAACTTTCGGGCGTGGGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCAGCAGCTGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGGTTacgac < 1:98568/301‑1 (MQ=255)
cgggggctcttccgatctccAGAAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGGTTACGACGGCa < 1:416926/283‑1 (MQ=255)
ggTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACGTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAACGCCAACACCCCATCTTTTCGCGACATTCAACCGCCTCTGAATTTCATTCTTTGTACGCCATCAACTTAGCTGAATATCCTTTTCTTTAACAGTTTATTCATTAAATGCCGGTTACGCCGGCATTa > 2:118695/1‑300 (MQ=255)
gTTAATCCATACCCCAGCAGCAAATTCAGTTGTACTTTCGAGCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCCAACCGGCCAGCATCAACGGTTGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGGTTACGACGGCATTAAt < 2:403557/301‑1 (MQ=255)
aTCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCCTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAATAGTTGATTCGTTAGTCGCCGGTTAAGACGGCATTAATtcgc > 2:58294/1‑301 (MQ=255)
aTCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTAATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGTTTACGACGGCATTAATgcgc > 1:39379/1‑301 (MQ=255)
ccATACCCCAGCAGCAAATTCACGGGTACGTTCGGTGGGGCGAAAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGGTTACGACGGCATTAATgcgc < 2:364279/299‑1 (MQ=255)
aCCCCAGCAGCAAATTCCGTGATACTTTAGGGCGGGCTACAAAAAAGATAGCAGGAAAAGCGACCAGCAAAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACTCCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGGTTACGACGGCATTAATGCGCAAAt < 1:454938/299‑1 (MQ=255)
aCCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGGTTACGACGGCATTAATGCGCAAATa > 1:114500/1‑300 (MQ=255)
ccAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGTTTCGTTAGTCGCCGGTTACTACGGccacatcggaagtgcgtagg > 2:416829/1‑282 (MQ=255)
agcagcAAATTCAGTGGTACTTGCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGGTTACGACGGCATTAATGCGCAAATAAGTCGc < 1:58302/301‑1 (MQ=255)
agcaAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCaa > 1:222499/1‑216 (MQ=255)
ccaAATGCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGGTTACGACGGCATTAATGCGCAAATAAGTCGCtata < 2:132149/300‑1 (MQ=255)
aCAAAAAAGAAAGCCCGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGGTTACGACGGCATTAATGCGCAAATAAGTCGCTATACTTCGGATTTTTGCCATGCTATTTCTTTa < 1:335314/301‑1 (MQ=255)
cAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAATCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGTTTACGCCGGCATTAATTCGCAAATAAGTAGCTATACTTCGGCTTTTTGCTATGCTTTTTCttttt > 2:339908/1‑299 (MQ=255)
aaaaaaaGAAAGCCGGACAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGGTTACGACGGCATTAATGCGCAAATAAGTCGCTATACTTCGGATTTTTGCCATGCTATTTCTTTAc < 2:39375/300‑1 (MQ=255)
aaaaaaACTAACCGGAAAAGCGCCCAAAAAAAAGAGCCCACCGGCCAGCCTCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTCCCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGGTTACGACGGCATTAATGCGCAAATAAGTCGCTATACTTCGGATTTTTGCCATGCTATTTCTTTACa < 2:114477/301‑1 (MQ=255)
aTAGCCGGAAAAGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGGTTACGACGGCATTAATGCGCAAATAAGTCGCTATAATTCGGATTTTTGCCATGCTATTTCTTTACATCTCTa > 1:203947/1‑300 (MQ=255)
ccGGAAAAGCAACCAGCATAAATAGCAAACCTGCCAGCATCAGCTGTTGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCCTACGACCACTACCAGTATCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAATCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGGTTACGACGGCATTAATGCGCAAATAAGTCGCTATACTTCGGATTTTTGCCATGCTATTTCTTTACATCTCTaaaaca < 1:495676/301‑1 (MQ=255)
aGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCgg < 2:254290/217‑1 (MQ=255)
aGCGACCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCgg > 1:254361/1‑217 (MQ=255)
aaCCAGCATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGGTTACGACGGCATTAATGCGCAAATAAGTCGCTATACTTCGGATTTTTGCCATGCTATTTCTTTACATCTCTAAAACAAAACATAACg < 1:251488/300‑1 (MQ=255)
cATAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACCGTTGATTTGTTAGTCGCCGGTTACGACGGCCTTAATGCGCAATGACGTCGCTATACTTCGGATTTTTGCTATTCTATTTCTTTAAATCTATAAAACAAAACATAACGAAAccc > 2:213480/1‑299 (MQ=255)
tAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGGTTACGACGGCATTAATGCGCAAATAAGTCGCTATACTTCGGATTTTTGcc > 1:554907/1‑256 (MQ=255)
tAAAGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAG‑CCCCATACGACCACTACCATTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAATCAATCAACTTAGCTGAATTTACTTTTCTTTAACATTTGTTCCGTTAGTCTCCGGTTTACACGGCATTAATTCGCAAATAAGTCGATATACTTCGGATTTTTTATATGCTTTTTTTTTTCATCTTTCAAAAAAAAAAAAAAGaaaaacaat > 2:289966/1‑295 (MQ=255)
tAAAGAGCAAACCGGCCAGCACCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAACTTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGGTTACGACGGCATTAATGCGCAAATAAGTCGCTATACTTCGGATTTTTGcc < 2:554776/256‑1 (MQ=255)
aaGAGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGATTTTACTTTTCTTTAACAGTTGATTCGTTAGTCGACgg > 1:506725/1‑204 (MQ=255)
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ACTATCTTCGATTAACACCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAGTCCAGCAGGCATACCGAAGTTAATGGCACAAAAAAGAAAAGCAAACTGCGCAAAACTGATGGTTAATCCATACCCCAGCAGCAAATTCAGTGGTACTTTCGGTCGTGCGACAAAAAAGATAGCCGGAAAAGCGACCAGCATAAAGCGCAAACCGGCCAGCATCAGCGGTGGCATGTTATGAAGCCCCACTTTGATGACCACAAAATTTAGCCCCCATACGACCACTACCAGTAGCGCCAACACCCCATCTTTTCGCGACATTCTACCGCCTCTGAATTTCATCTTTTGTAAGCAATCAACTTAGCTGAATTTACTTTTCTTTAACAGTTGATTCGTTAGTCGCCGGTTACGACGGCATTAATGCGCAAATAAGTCGCTATACTTCGGATTTTTGCCATGCTATTTCTTTACATCTCTAAAACAAAACATAACGAAACGCACT > NC_000913/1620736‑1621318
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
