Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F9 I0 R1
|
113 |
83.2 |
1840812 |
91.6% |
1686183 |
224.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,335,743 |
A→T |
18.2% |
intergenic (+285/‑88) |
yciX → / → acnA |
uncharacterized protein/aconitate hydratase 1, aconitase A |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,335,743 | 0 | A | T | 18.2%
| 155.3
/ 2.1
| 60 | intergenic (+285/‑88) | yciX/acnA | uncharacterized protein/aconitate hydratase 1, aconitase A |
| Reads supporting (aligned to +/- strand): ref base A (17/31); new base T (9/3); total (26/34) |
| Fisher's exact test for biased strand distribution p-value = 2.14e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ACACCGCAGCAATAACAGCTTGAGTTATCTCAACACAAAATAATAACCGTTAAGGGTGTAGCCTATGA‑TCAACACAAATATGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTTTGCTCGAA > NC_000913/1335508‑1335971
|
accccGCATCAATAACAGTTTGAGTTTTCTAAACAAAAAATAATAACCGGTAAGGGTGTAGCCTATGA‑TCAACACAAATATGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCa < 2:20505/236‑1 (MQ=255)
acCGCAGCAATAACAGCTTGAGTTATCTCAACACAAAATAATAACCGTTAAGGGTGTAGCCTATGA‑TCAACACAAATATGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGT‑CTTGCCCCAAGGGTTCTCCTCTTTTATCAACTTTGGTTGTTTTCaaa > 1:134078/1‑239 (MQ=255)
cGCAGCAATAACAGCTTGAGTTATCTCAACACAAAATAATAACCGTTAAGGGTGTAGCCTATGA‑TCAACACAAATATGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGGTGT‑CATTTGC‑TTTTCCACAAGGTTTTTCCCCTTTTTTCAATTTGGGTTTTTTTCcaa > 1:318829/1‑237 (MQ=255)
aaTAACAGCTTGGTTTTACTCAACAAAAAAAAATAACCGTTAAGGGGTTAGCCTATGA‑TCAACACAAATTTGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTTCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTAcg < 1:795926/239‑1 (MQ=255)
aacaattttgtttatcccaaacaaaaaTAATAACCGTTAAGGGGTTAGCCTATGA‑TCAACACAAATATGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGa < 2:329471/216‑1 (MQ=255)
aCAGCTTGAGTTATCTCAACACAAAATAATAACCGTTAAGGGTGTAGCCTATGA‑TCAACACAAATATGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGGTTT‑CCCTTTG‑TTTTCCACCAAGTTTTTCCCCTTTTTTCAATTTGGGGTGTTTTCAAACCGTTACGCGaa > 1:96189/1‑238 (MQ=255)
cgttttatttATCTCAAAAAAAAAAAATAACCGTTAAGGTTGTCGCCTAGGA‑TCAACCAAAAGTTGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GGCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGt < 2:337426/231‑1 (MQ=255)
cTTGAGTTATCTCAACACAAAATAATAACCGTTAAGGGTGTAGCCTATGA‑TCAACACAAATATGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGTCCTTTTAC‑TTTCCCCCAAGGTTTTTCCCTTTTTTTCATTTTGGGTGTTTTTCaaaacttaagggtgtttt > 2:53594/1‑224 (MQ=255)
aGTTATCTCAACACAAAATAATAACCGTTAAGGGTGTAGCCTATGA‑TCAACACAAATATGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTgtgt < 1:257950/239‑1 (MQ=255)
aGTTATCTCAACACAAAATAATAACCGTTAAGGGTGTAGCCTATGA‑TCAACACAAATATGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGGTGT‑CCTTTGC‑TTTTCCACAAGGGTTCTCCTCTTTTTTCAATTTTGGGTGTTTTCAAAACGCTTAGCGATGTTTgggt > 2:279033/1‑239 (MQ=255)
ttattcAACCAAAAATAATATCCTGTAAGGGTGTGGCCTTTGA‑GCAACAAAATTATTAATTAGTGGGCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTAt < 2:880689/235‑1 (MQ=255)
taaaCAAAAAATAATCACCTTTAAGGGTTTAGCCTTTGA‑TCAACCCAAATATGAATATTTGGTCCTGGATGGGCGCTTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCGCTGGATCATTACTCCCTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCttt < 2:318829/237‑1 (MQ=255)
aataatAACCGTTAAGGGTGTAGCCTATGA‑TCAACACAAATATGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGG‑CCATTGC‑TTTGCCACAAGGTTTTTCCTCCTTTTTTCATTTGGGTTGTTTTTAAATTGTTACGGCAGGTTT‑TGTTTTTTTTaaaaaatta > 2:474293/1‑231 (MQ=255)
aaaaatccctttAAGGGTTTTGCTTATGACACAACA‑AAATTTGAAATATTGGTCCCGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCAcc < 2:134078/229‑1 (MQ=255)
ataaCCGTTAAGGGTTGAGCCTTGTT‑TCAACACAAATATGAAATTTTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTTGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTg < 2:784755/239‑1 (MQ=255)
aaGGGTGTAGCCTATGA‑TCAACACAAATATGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGGTGT‑CATTTGC‑TTTTCCCCAAGGTTTTTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGCTGTTTGTGTTATCTTTAATATTTACCCTGAAGACAATc > 1:195766/1‑239 (MQ=255)
gtAGCCTATGA‑TCAACACAAATATGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CCTTTGC‑TTTGCCCCCAGGTTTTTCCTCTTTTATCAATTTTGGTTGTTTTCAAATCGGTACCCGCTGTTTGTGTTATCTTTAAAATTTACCCTTAAGAGAATAAAGGCt > 1:751697/1‑239 (MQ=255)
tAGCCTATGA‑TCAACACAAATATGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CCTTTGC‑TTTTCCCCAAGGTTTCTCCTCTTTTATTAATTTGGGGTGTTATCAAATCGTTACGCGATTTTTTTGTTTTCTTTAATATTCACCCTGAAGAAAATCAggggt > 1:685693/1‑236 (MQ=255)
aTGA‑TCAACACAAATATGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CCTTTTC‑TTTGCCCCAAGGGTTCTCCCCTTTTATCCATTTGGGTGGTTTTCAAATCGTTACCTGGTGTTTGTGTTTTTTTTAATTTTTACCCGTAAGAGAATAAAGGGTTCggca > 2:878830/1‑235 (MQ=255)
tgttCAACAAAAATATGAAATATTGGTCCTGGATGGGCGCGTTTTCTCG‑TTCGATGCTCTTCTGGGCCGAACTCCTCTGGAGCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAAcc < 2:533055/236‑1 (MQ=255)
ta‑TCAACCCAAATTTGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GGCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAAccc < 1:199051/238‑1 (MQ=255)
gA‑TCAACACAAATATGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAAccc < 1:279033/239‑1 (MQ=255)
aacaaaaccaAATATGAAATTTTGGTCCTGGGTGGGCGCGTTTTCCCTGGCCAATGC‑CTTCCGGGCCGAACTCCTCTGGATCATTACTCACTTATCCGTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAAccc < 2:96189/231‑1 (MQ=255)
acacAAATATGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGCACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGCTTTTCCCACAA‑GTTTCTCCTCTTTTTTTAAATTTGGTTTTTATCAAATCGTTTCGCGATGTTTGTGTTATTATTTATATTCTACCTCAAGAGAATCAGAGCTTCGCAACCCCGt > 1:277628/1‑237 (MQ=255)
acacAAATATGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGGTGT‑CATTTGC‑TTTGCCACAAGGGTTCTCCTCTTTTATCAATTTTGGTTGTTTTCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTTACCCTGAATAGAATCAGGGCTTTGCCACCCCGTCa > 1:114849/1‑239 (MQ=255)
ccaAATTTGAAATTTTGGTCCTGGATGGGGGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCCCTGGATCATTACTCCCTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCAtt < 2:883358/238‑1 (MQ=255)
aaTATGAAATTTTGGTCCTGGATGGGCGCGTTTTCTCT‑GGCGATGCGCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAag < 2:195766/239‑1 (MQ=255)
atatGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTTTGTTTTTTTTAATATTTACCCTTAAGAGAATCAGGGCTTTCCAACCCTGTCATTAagg > 1:883358/1‑239 (MQ=255)
attaaaTGTTGGGCTTGTGTGGGCTCTTTTTCTCT‑GTCGAGCCTCGTCTGGGACGAACTCCTCGGGATCATGACTCACTGATCCTGGCCCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTTCCACAAGGTTTCTCCTCTTGTAGCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCGTGTCATTAaggag < 2:277628/236‑1 (MQ=255)
tGAAAGTTTGGGCCTGGATGGGCCCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGAGCCTTGACCCCGATGCGGCGGGGTTGT‑CATTTGC‑TGTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAagga < 2:203754/237‑1 (MQ=255)
aaaTATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTTG‑CTTGCCCCAAGGTTTTTCCCCTTTTTTCAATTTGGGTTGTTATCCAATCGTTACGCGATGTTTGTTTTATATTTAATATTCACCCTGAAGAGAATAAGGGCTTCGCCACCCTTTCATTAAtgagga > 1:203754/1‑238 (MQ=255)
gATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAAAGAATCAGGGCTTCGTAACCCTGTACTTAAGGAGGAGCTATGTCGTCAAc > 1:569234/1‑238 (MQ=255)
gTTTTCTCT‑GGCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGa < 1:135811/177‑1 (MQ=255)
gTTTTCCCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGaa < 1:608093/239‑1 (MQ=255)
gCCGACCCCCTTTTGTTCCTTACTCCCTGATCCTTGACCCCGCTGGGGGGGGGGTGT‑CATTTGC‑TTTGCCACAAGGTTTCCCCTCTTTTATTAATTTTGGTGTTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGcc < 2:722529/238‑1 (MQ=255)
tgcctcGGGATTATTACTCACTGATCCTTGACCCCGCTGGGGCGGGGTTGG‑CATTTGC‑TTGGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTAACAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATa < 1:190545/237‑1 (MQ=255)
ttaTTACTCACTGATCCTTGACCCCGCTTGGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTTTCCTCTTTTATCAATTTTGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCa < 2:8698/237‑1 (MQ=255)
tCATTACGCACTGATCCTTGACCCCGGTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTAcc < 1:187995/238‑1 (MQ=255)
tCATTACCCACTGATCCTTGACCCCGGTGCGGCGGGGTTGT‑CATTTGA‑TTTGCCACAAGGTTTCTACTCTTTTATCAATGTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTAcc < 1:801867/238‑1 (MQ=255)
ttACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGG‑TCTTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTTGGTTGTTATCAAATTGATACGCGATTTTTGTGTTATCTTTTATATTCACCCTCAAGAGGAACCGGGGTTTGCAACCCTTGCATTAAGGAGAGGCCTTATCGTCAACCCCCAGAGAAGCCAGGAAGGCACCATTGGCGGCCaaaaaaaaaaatatatca > 2:190545/1‑229 (MQ=255)
gACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCCACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGACTGCCg > 1:23519/1‑236 (MQ=255)
ccccGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTAAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTtgc < 1:474293/239‑1 (MQ=255)
ccGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCAtt < 2:196007/143‑1 (MQ=255)
ccGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAAGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCAACCTGAAGAGAATCAGGGCTTCGCAACCCTGTCAtt > 1:196007/1‑143 (MQ=255)
ttttttaaagagtcggtgtaTTTTC‑TTGACCACTAGTTTTTCCCTTTTGTATCAAGTTTGGTTGTTTACAAATCGTGACGCGATCGTTGTGGTATCTTTAATATTCACCCTGAAGAGAAGCAGGCCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAACCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTACTTCAGCCTGCCGCTtgc < 2:235244/218‑1 (MQ=255)
cGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTTTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGcc < 2:154835/198‑1 (MQ=255)
cGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGcc > 1:154835/1‑198 (MQ=255)
cggGGTTTT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCa < 1:878830/238‑1 (MQ=255)
gT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTTGGCGa > 1:89891/1‑239 (MQ=255)
ttgc‑tttgcCACAAGGTTTTTCCTTTTTTATCAATTTGGGTTGTTTTCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCa < 2:114849/239‑1 (MQ=255)
tgcCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCAACCTGACGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGCGGAGCTATGTCGTCACCCCTACGAGAAGCCAGTAAGGAGCCGTTGCAGGCCAACGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCAcctgtctcttctacaaat > 1:235244/1‑221 (MQ=255)
agagtcttttttttttCAATTTTGGTTGTTTTCAAATCGTTACGCGATGTTTGTGTTTTCTTTAAAATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGt < 2:413886/229‑1 (MQ=255)
tttCTCCTTTTTTATCAATTTGGGTTTTTATCAAATCGTTACGGGATGTTTGTTTTATCTTTAATATTCACCCTGAAGGGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTAGGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGt < 2:751697/238‑1 (MQ=255)
tctcCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCa > 1:672250/1‑238 (MQ=255)
ttcctcTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACt < 2:672250/238‑1 (MQ=255)
ttttATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAagg < 2:426594/101‑1 (MQ=255)
ttttATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAagg > 1:426594/1‑101 (MQ=255)
tttATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGCTAAAACTTACCACTACTACACCCTGCCGCTTGCGCCTAAATCACTGGACGATCACACCCGCACACCAAAACCACTCAAACtt > 2:284081/1‑239 (MQ=255)
tttGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTCTgactct > 1:413886/1‑234 (MQ=255)
ttGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTTTGCTCGaa > 1:27884/1‑239 (MQ=255)
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ACACCGCAGCAATAACAGCTTGAGTTATCTCAACACAAAATAATAACCGTTAAGGGTGTAGCCTATGA‑TCAACACAAATATGAAATATTGGTCCTGGATGGGCGCGTTTTCTCT‑GTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGT‑CATTTGC‑TTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTTTGCTCGAA > NC_000913/1335508‑1335971
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
