Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F9 I0 R1
|
113 |
83.2 |
1840812 |
91.6% |
1686183 |
224.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,689,746 |
T→C |
16.4% |
E172G (GAG→GGG) |
bcsZ ← |
endo‑1,4‑D‑glucanase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,689,746 | 0 | T | C | 16.4%
| 130.1
/ 2.5
| 56 | E172G (GAG→GGG) | bcsZ | endo‑1,4‑D‑glucanase |
| Reads supporting (aligned to +/- strand): ref base T (23/23); new base C (4/6); total (27/29) |
| Fisher's exact test for biased strand distribution p-value = 7.31e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 |
CATGTAAACGCGGATAGCGTCGTAGCTGCTGATCAATGTTTTTTCGGCTTTTAGCTGCCAGCCTTTGTCTTTCTCATAGCGCACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACGCGCTGCCGATGTCGGTATAACGCTGCTCTTTCCACAAACGCCCCGCCTCCAGCAACGACCAGGCCATCCAGACATCACCATCGGAGGCCGAATTGCTGTCCAGCACTTCCCACTTACTGTTCTCTTTCTTGCCCCACA > NC_000913/3689514‑3689971
|
caTGTAAACGCGGATAGCGTCGTAGCTGCTGATCAATGTTTTTTCGGCTTTTAGCTGCCAGCCTTTGTCTTTCTCATAGCGCACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCCATAAACGTTGATTGGTTTCGCCCACCGGGGTCCCCGGCGCGCCCAACCGGGTGGAATACTGCGCCCGCGTCGGCGGCAGGTAGCTGGGGGTAAAACACCCACTGTATACCTCCGCaa > 2:532557/1‑239 (MQ=255)
aTGTAAACGCGGATAGCGTCGTAGCTGCTGATCAATGTTTTTTCGGCTTTTAGCTGCCAGCCTTTGTCTTTCTCATAGCGCACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCCAACCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGAAGCTGGGGTTAAAAAGCCAGCCGTTATCCTCAGCaaa > 1:707621/1‑239 (MQ=255)
aTGTAAACGCGGATAGCGTCGTAGCTGCTGATCAATGTTTTTTCGGCTTTTAGCTGCCAGCCTTTGTCTTTCTCATAGCGCACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCCCGCCAAAGCGGGGGAAATACTGCGCCAGCGTCGGCGGCAGGTAACTGGGGTTAAAACGCCAGCCGTTATCCTCAGCaaa > 1:568791/1‑239 (MQ=255)
aCGCGGATAGCGTCGTAGCTGCTGATCAATGTTTTTTCGGCTTTTAGCTGCCAGCCTTTGTCTTTCTCATAGCGCACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCCCAGCGTGGTCCACGGCGCGCCAAACCGGGGGAAATACTGCGCCAGCGTGGGCGGCAGGAAGCTGCGGTTAAAACCCCCGCTGTTATCCCCACCAAAAccc > 2:663911/1‑237 (MQ=255)
ggATAGCGTCGTAGCTGCTGATCAATGTTTTTTCGGCTTTTAGCTGCCAGCCTTTGTCTTTCTCATAGCGCACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGATGATTGGTTTCGCGCAGCGTGGTCCCCGGAGCGCCAACACGGGGGAAATACTGCCCCCGCTGCGTCGGCGGATAGACGGGGTAAAAAAGCCAGCGGCAACCCTACACAAAACCCACCTTg > 2:288234/1‑239 (MQ=255)
tAGCGTCGTAGCTGGTGATCAATGTTTTTGCGGCTTTTAGCTGCCAGCCTTTGTCTTTCTCATAGCGCACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGcc < 1:347969/238‑1 (MQ=255)
cgtcgtAGCTGCTGATCAATGTTTTTTCGGCTTTTAGCTGCCAGCCTTTGTCTTTCTCATAGCGCACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTACCTGGGGTTAAAAAGCCAGCGGTTATCCTCCGCAAAACCCCATTTGccccgg > 1:36297/1‑236 (MQ=255)
gtAGCTTCTGTTAAATGTTTTTGCGGCTTTTAGCTGCCCGCCTGTGTCTTTCTCATAGCGCACCCAGTCGGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTaaca < 2:707621/239‑1 (MQ=255)
gtAACTGCTGATCAATGTTTTTTCGGCTTTTAGCTGCCAGCCTTTGTCTTTCTCATCGCGCACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTaac < 1:593986/238‑1 (MQ=255)
gctgATCAATGTTTTTTCGGCTTTTAGCTGCCAGCCTTTGTCTTTCTCATAGCGCACCCAGTCTGGCGAAGAACCTTTCGGGGCGGTTTCCCGCAATAAACGTTGATTGGTTTCGCGCACCGTGGTCCACGGCGCGCCAAACGGGGGGAAATACTGGCCCAGCGTCGGCGGCAGGTACCCGGGGGTAAAACGCCAACCGTTTTCCCCCCCAAAACCCACCTTACCCgggcaaaaaaggg > 2:357305/1‑228 (MQ=255)
gctgATCAATGTTTTTTCGGCTTTTAGCTGCCAGCCTTTGTCTTTCTCATAGCGCACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGGGGTCCCCGGGCCGCCACAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCCAGTAGCTGGGGGTAAAACGCCAACTGTTTTTCTCCACAAAACCCCCCTTTCCCGGGaaaaaaaaag > 2:891881/1‑234 (MQ=255)
tctattttttttGGTCTTTGTGCTCCCGTCCTTTGTCTTTTTCAATGCGCCCCCGGTCTGGCGAACAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAAccc < 2:872730/233‑1 (MQ=255)
tGTTTTTTCGGCTTTTAGCTGCCAGCCTTTGTCTTTCTCATAGCGCACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACCGCGCCAGCGTCGGCGGCAGGGAGCCTGGGGTAAAACGGCCCCTGTTTTCCCCAGCCAAACCCACATTCCCCGGGAAAAACAGGGAAcccagc > 2:411542/1‑238 (MQ=255)
tttgctgCTTTTCGTTGCCAGCCTTTGTCTTTCTCAAAGCGCCCCTAGTCTGGGGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGGTTCGCGCAGCGTGGACCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAgg < 2:111819/233‑1 (MQ=255)
tttCGGCTTTTAGCTGCCAGCCTTTGTCTTTCTCATAGCGCACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATTGGACCCAACCCAGGc > 1:824950/1‑239 (MQ=255)
cGGCTTTTGGTTTCCCGCCTTTGTCTTTTCCATAGCGCACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCAcc < 2:568791/239‑1 (MQ=255)
gCTTTTAGCTGCCAGCCTTTGTCTTTCTCATAGCGCACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCCCTTTTCCCGGTAACAAAATGGAAcccagcccaagacacgc > 2:882131/1‑231 (MQ=255)
ttttAGCTGCCTGCCTGTGTCTTTCTCATAGCGCACCCAGTCTGGCGAAAAACCTTTCGGGGCTGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTTGTCCACGGCGCGCCAAAGCGGGTGAAAGACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGTTAACAACATGGAACCCAGCCCAGGCACCGTca < 1:288234/239‑1 (MQ=255)
tttgtgCTGCCCGTTTTTTTTTTTCTCAAGGCGCACCCAGGCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAAAAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTca < 2:875465/234‑1 (MQ=255)
tttagcgcacAGCCTGTGTCTTGCTCATAGCGCACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGGTTCGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTca < 1:787494/229‑1 (MQ=255)
gtccttcctaTAGCGCCACCAGTCTGGCGAAAAACCGTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGa < 1:393690/230‑1 (MQ=255)
gTCTTTCTCATAGCGCACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTGCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGa < 1:637555/239‑1 (MQ=255)
tctcATAGCGCACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCCCAGCGTGGGCCACGGCGGGCCAAAACGGGTGAAATACTGCGCCCGCGTCGGCGGCAGGTAGGCGGGGGTCAACAGCCACACGGTTTCCCTACAAAAAACCACCTTTCCCGGGAACAACATGGAACCCAAGCCAGGCACCCGcaccccccacacccccccgacacaa > 2:20174/1‑218 (MQ=255)
cACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGa < 2:6335/224‑1 (MQ=255)
cACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGa > 1:6335/1‑224 (MQ=255)
aCCCAGGCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGGGGGCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAAcgc < 1:905383/239‑1 (MQ=255)
tCTGGCGAAAAACCTTTGCGGGCGTTTTCCAGAAATAAGCGTTGATGGTGTGCGCGCATGGTTGGCCCCGGCGGGCCAAAGCGGGTGAAATACTGGGCCAGCTTCGGCGGCAGGGAGCTGGGGTTAAAACGCCAGCTGTTAGCCTCAGCAAAACCCACTTTGGCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACGCGCTGcc < 2:272886/239‑1 (MQ=255)
tCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGGAACACCATGGAACCCAACCCAGGCACCCTCACCACTTCCTCCCGCCCCATACGATTTAGCAACCCGCTGcc > 1:240575/1‑239 (MQ=255)
cTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGGTTCGCGCCGCGTGGTCCACGGCGCGCCGAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAACAGCCCGCTGTTATCGTCAGCAAAAACCACTTTTCCCGCTAACAACATGGAACCCCACCCAGGCACCGGCCCCACCTCCTCCCCCCCGaaaaggtttgacaacacgacgcca > 2:151103/1‑216 (MQ=255)
ggCGAAAATCCTTTCGGGGCGGTTTCAAGCAATAAACGTTGATTGGTTTGGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACGCGCTGCCGAt < 1:20174/239‑1 (MQ=255)
gAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGGAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACGCGCTGCCGATGt < 1:882131/238‑1 (MQ=255)
aaCCTTTCGGGGCGGTTTCCCGCAATAAGCGGTGATTTGTTTCGCGCAGCGTGGTCCACGGGGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACGCGCTGCCGATGTCGGta < 2:36297/239‑1 (MQ=255)
aaCCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCAAAACGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTCGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCCCTTTGCCCGGGAACAACATGGAACCCCGCCCCGGCACCCGCACCCCTTCCCCCCCCGCGAAACATTTTACCAAcccccccccgacgccggga > 2:350837/1‑221 (MQ=255)
aGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACCCGCTGCCGAGTTCGGTATAACCCTGCCCTTTCCCCaa > 1:443701/1‑239 (MQ=255)
taaccttttgtgggTTTCGCGCGGGGGGGGCCCCGGGCCTCTAGAGCGGGTAAAATCCTGCGCCAGGGTCGGGTGCCGGTAGCGGGGGTTAAAACCCCAGTGTTTACCCCCAGCAAACCCCACTTTGCCCGGTAAAAACATGGACCCCAGCCAAGGCCCCTTCCCCTCTTCCTCCCGCGCGATCCGTTTTAGCAACGCGCTGCCGATGTCGGTATAACGCTGCTCTTTCCACAACCGcc < 2:8229/227‑1 (MQ=255)
aaCGTTGATTGGTTCCGCGCGTCGTGGCCCACGGCGCGCCGAAGCGGGTGAAATCCTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACGCGCTGCCGATGTCGGTATAACGCTGCTCTTTCCACAAACGcccc < 1:151103/239‑1 (MQ=255)
cgcAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACGCGCTGCCGATGTCGGTATAACGCTGCTCTTTCCACAAACGCCCCGCCTCCAGCAACGACCa > 1:487216/1‑239 (MQ=255)
cGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCCCGCGATACGTTTTAGCAACGCGCTGCCGATGTCGGTATAACGCTGCTCTTTCCACAAACGCCCCGCCTCCCGCAACGACCAGccc > 1:439287/1‑238 (MQ=255)
gTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAAcc < 2:394343/119‑1 (MQ=255)
gTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAAcc > 1:394343/1‑119 (MQ=255)
ggCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACGCGCTGCCGATGTCGGTATAACGCTGCTCTTTCCACAAACGCCCCGCCTCCAGCAACGACCAGGCCATCCCGACAt > 1:43066/1‑238 (MQ=255)
cgcCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATCCGTTTTAGCAACGCCCTGCCGATGTCGGTATAACGCTGCTCTTTCCACAAACGCCCCGCCCCCAGCCACACCCAAGCCATCCCGAcaccacaa > 2:202182/1‑237 (MQ=255)
cgcCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACGCGCTGCCGATGTCGGTATAACGCTGCTCTTTCCACAAACGCCCCGCCTCCAGCAACGCCCAGGCCATCCAGACATAAcc > 1:713364/1‑238 (MQ=255)
gggggGAAATACCGCCCCGGGTTGGGCGTCGGGGAGGTGGGTTTAAAGCGGCGACGGTTAGCCCTAGAAAACCCCACTGTGCCAGGTACCAAAATGGAACCCAGCCGCGGCACGGTCACCACTTCCTCCCGGCCGATTCGTTTTAGCACCCCGCTGCCGATGGCGGTATAACGCTGCTCTTTCAACAAACGCCCCGCCTCCAGCAACGACCAGGCCATCCAGACATCACCATCGGa < 2:130982/235‑1 (MQ=255)
gAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCGCTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACGCGCTGCCGATGTCGGTATAACGCTGCTCTTTCCCCAAACGCCCCGCCTCCACCAACGACCAGCCCATCCAAACATACCCACCAGAGGCCgcaa > 2:358175/1‑236 (MQ=255)
aagaCTGCGCCAGCGCCGGCGGAAGGTAGCGGGGGTTAAAACCCCAGCTGTTAACCTCAGCAAAACCCACTTTGCCCGGTAACAACAGGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACGCGCTGCCGATGTCGGTATAACGCTGCTCTTTCCACAACCGCCCCGCCTCCAGCAACGACCAGGCCATCCAGACATCACCATCGGAGGCCGAATTg < 1:357305/236‑1 (MQ=255)
gcgcCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACt < 2:412779/110‑1 (MQ=255)
gcgcCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACt > 1:412779/1‑110 (MQ=255)
acggTCGGCGGCAGGTACCTGGGGTTAAAACGCCAGCTGTTAACCCAAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACGCGCTGCCGATGTCGGTATAACGCTGCTCTTTCCACAAACGCCCCGCCTCCAGCAACGACCAGGCCATCCAGACATCACCATCGGAGGCCGAATTGCTGTCCAGCAc < 1:202182/236‑1 (MQ=255)
ggcggcggCAGGGAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGACCCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACGCGCTGCCGATGTCGGTATAACGCTGCTCTTTCCACAAACGCCCCGCCTCCAGCAACGACCAGGCCATCCAGACATCACCATCGGAGGCCGAATTGCTGTCCAGCACtt < 1:663911/236‑1 (MQ=255)
gTCGGCGGCAGTGAGCTGGGGTTAAAACGCCAGCTGTTACCCCCAGCAAAACCCCCTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACGCGCTGCCGATGTCGGTATAACGCTGCTCTTTCCACAAACGCCCCGCCTCCAGCAACGACCAGGCCATCCAGACATCACCATCGGAGGCCGAATTGCTGTCCAGCAc < 1:411542/236‑1 (MQ=255)
gggcggtgggttgtcggggTTAAACCCCCTGGTTTTACCCCCAGCAAACCCCCCTTTGCCGGGTAACAACAGGGAACCCACCCCAGGCACCGTCACCACTTCCGCCCGCGCGATACGTTTTAGCAACGCGCTGCCGATGTCGGTATAACGCTGCTCTTTCCACAAACGCCCCGCCTCCAGCAACGACCAGGCCATCCAGACATCACCATCGGAGGCCGAATTGCTGTCCAGCACTTccc < 2:443701/224‑1 (MQ=255)
gggttgttGGGGTTAAAACCCCAGCTGTTACCCCCAGCAAAACCCCCTTTCCCCGGAAACAACATGGAACCCAGCCCAGGCCCCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACGCGCTGCCGATGTCGGTATACCGCTGCTCTTTCCACAAACGCCCCGCCTCCAGCAACGACCAGGCCATCCAGACATCACCATCGGAGGCCGAATTGCTGTCCAGCACTTCCCACTTAc < 2:439287/231‑1 (MQ=255)
cAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACGCGCTGCCGATGTCGGTATAACGCTGCTCTTTCCACAAACGCCCCGCCTCCAGCAACGACCAGGCCATCCAGACATCACCATCGGAGGCCGAATTGCTGTCCAGCACTTCCCCCTTACTTTTCCCTTTCTTTCCCcacc > 1:309480/1‑237 (MQ=255)
aGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACGCGCTGCCGATGTCGGTATAACGCTGCTCTTTCCACAAACGCCCCGCCTCCAGCAACGACCAGGCCATCCAGACATCACCATCGGAGGCCGAATTGCTGTc > 2:851543/1‑199 (MQ=255)
aGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACGCGCTGCCGATGTCGGTATAACGCTGCTCTTTCCACAAACGCCCCGCCTCCAGCAACGACCAGGCCATCCAGACATCACCATCGGAGGCCGAATTGCTGTc < 1:851543/199‑1 (MQ=255)
|
CATGTAAACGCGGATAGCGTCGTAGCTGCTGATCAATGTTTTTTCGGCTTTTAGCTGCCAGCCTTTGTCTTTCTCATAGCGCACCCAGTCTGGCGAAAAACCTTTCGGGGCGGTTTCCAGCAATAAACGTTGATTGGTTTCGCGCAGCGTGGTCCACGGCGCGCCAAAGCGGGTGAAATACTGCGCCAGCGTCGGCGGCAGGTAGCTGGGGTTAAAACGCCAGCTGTTATCCTCAGCAAAACCCACTTTGCCCGGTAACAACATGGAACCCAGCCCAGGCACCGTCACCACTTCCTCCCGCGCGATACGTTTTAGCAACGCGCTGCCGATGTCGGTATAACGCTGCTCTTTCCACAAACGCCCCGCCTCCAGCAACGACCAGGCCATCCAGACATCACCATCGGAGGCCGAATTGCTGTCCAGCACTTCCCACTTACTGTTCTCTTTCTTGCCCCACA > NC_000913/3689514‑3689971
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
