Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F9 I0 R1	113	83.2	1840812	91.6%	1686183	224.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	3,862,676	G→C	32.7%	pseudogene (927/1617 nt)	glvC ←	pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,862,676	0	G	C	32.7%	15.8 / 4.9	32	pseudogene (927/1617 nt)	glvC	pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component
Reads supporting (aligned to +/- strand): ref base G (6/14); new base C (3/6); total (12/20)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.72e-01

CGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCA‑CCA‑GCAT‑GGC‑GGTTAAGGT‑TGC‑GGG‑AATCAG‑C‑AAG‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAGTGGTGTAAAC  >  NC_000913/3862456‑3862914

cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCTTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCA‑CCA‑GCAT‑GGC‑GGCTTAGGT‑TTC‑GGG‑GATACG‑C‑CAA‑ACCCCCACtttttaccca                                                                                                                                                                                                                                >  1:51704/1‑233 (MQ=255)

   ggTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGGAAATTCCAGCGGTTCGGTAATTCCCA‑CCA‑GCAT‑GGC‑GGGTTATGT‑TGC‑GGG‑GAACAC‑A‑AAGACCCCCCACTTTTTcccactt                                                                                                                                                                                                                              >  1:471571/1‑235 (MQ=255)

    gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCA‑CCA‑GCAT‑GGCGGGTTAGGGT‑TTG‑GGG‑AA‑CAGAC‑AAC‑CCCGCACCTTTTAccctgc                                                                                                                                                                                                                               >  1:875311/1‑234 (MQ=255)

                     tCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCA‑CCA‑GCAT‑GGC‑GGGTAAGGT‑TTC‑GGG‑AAACCG‑C‑AAGCCCCGCCCCTTTTACCCCGTTTTCCgggcgcgcggggaa                                                                                                                                                                                                            >  1:7231/1‑227 (MQ=255)

                             tGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCA‑CCA‑GCAT‑GGC‑GGTTAAAGT‑TGC‑GGG‑GATCAG‑C‑CAA‑ACCGCCCCCTTTACCCCAATTTTCGTTGCGGGCGGGGAGTACAACg                                                                                                                                                                                                    >  1:64891/1‑238 (MQ=255)

                                                tCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCA‑CCA‑GCAT‑GGCGGGTTAAGAT‑TAG‑GGG‑AA‑CAG‑CAAAG‑CCACCCCATTTTACCCGGTTTTCAGG‑CCGGCAGGGAAGAACATACCCAAAAAAAAGCCCACG‑Gc                                                                                                                                                                                >  1:592437/1‑238 (MQ=255)

                                                             tgtGTTCCCCCCCACAACAAAGAAATACTTTACGGGAAACAGTGGGGCCCCAAGCTCGGTGTGTCCCACAAACAGAAGCGGTAAAAGAAACGGGAGTGTAAATCCAAGCGGTTCGGTAATCCCCA‑CCA‑GCTG‑GGG‑GGTTAGGGT‑TGC‑GGA‑AATCAG‑C‑AAG‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTg                                                                                                                                                                  <  2:556607/237‑1 (MQ=255)

                                                                                     aTACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCA‑CCA‑GCAT‑GGC‑GGTTAAAGG‑TTC‑GGG‑GATCAG‑C‑AAA‑CCCGCCCCCTTTTCCCCGTTTTTCGGGGCGGCAGTGGAGGACATAGCTAAAAAAATAGCCACG‑GCCCCACAGAATTTTTAGGT‑TTCGTGGAGGGGAAAAACg                                                                                                                                          >  1:877167/1‑238 (MQ=255)

                                                                                      tACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGGAATTCCCA‑CCA‑GCAT‑GGCGGGTTAAGGT‑TCG‑GGG‑GACGAG‑C‑AAC‑CCCCCCCCTTTTCCCCGATTTTCC‑GTGGGGGCGAGAAGGAAAACGCCTAAAAAAAGCCCCCGAGCCCCAAA‑AGTTTTTAGTG‑AACCTGGAGGGCaaaaacac                                                                                                                                         >  2:158676/1‑234 (MQ=255)

                                                                                                                       gggtgtCCCGAAAACAGAAACTGGAAAATGAACAGGAAGGTAAATCCCAGCGGTTCGGAAATGCCCC‑CCA‑GCAG‑GGG‑GGTTAAGGT‑TGG‑GGG‑AATCAG‑A‑AAG‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGgcgc                                                                                                        <  1:436192/236‑1 (MQ=255)

                                                                                                                                  aaaCAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCA‑CCA‑GCAT‑GGC‑GGTTCAAGC‑TGCGGGG‑AGCCGG‑C‑AGC‑CCCCCCCCTTTTAACC‑AGTTTTCGGGGCGGCAGTGAAGTTCACTCCTAAAAAAAAGCCCCCC‑GGCCCCAAGAACTTTTAGTTGACCGTCCCGGCACAAACGCCCTCCCGGGACAAACAATTTCacggacccgcgcacaaaacaaac                                                                                              >  2:358178/1‑216 (MQ=255)

                                                                                                                                             aggaaagaaacgagAAGGTAAATCCCAGGGTTTCTATAATCCCCA‑CCA‑GCAT‑GGC‑GGTTAAGGT‑TGC‑GGG‑AACCAG‑C‑AAG‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGAtg                                                                                  <  1:158676/225‑1 (MQ=255)

                                                                                                                                               gaaagaaagaGGAAGGTAATTTCCAGGGGTCCGGAAACCCCCC‑CCA‑GCAG‑GGC‑GGTTAAGGT‑TGC‑GGA‑AACACG‑C‑AAG‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGAtgct                                                                                <  1:491366/229‑1 (MQ=255)

                                                                                                                                                 aaggaaagggAAGTAAAATCCCATGGGTTCGGTAATCCCCC‑CCA‑GCAG‑GGC‑GTTTAAGGT‑GGG‑GGG‑AACCAG‑C‑AAG‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTgcg                                                                             <  1:668578/231‑1 (MQ=255)

                                                                                                                                                    gaaaggaaaGATAAATCCCGGGGGTCGGGTAATCCCCC‑CCA‑G‑GT‑GGG‑GGTTTAGGG‑TGG‑GGGAAATCAG‑C‑AAG‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc                                                                           <  1:189262/231‑1 (MQ=255)

                                                                                                                                                      aagggaatttAAATTCC‑GGGGTTTGGTAAATCCCC‑CAACGCAG‑GGG‑TGTTAGGGT‑TGG‑GGA‑AATAGG‑C‑AAC‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAg                                                                        <  1:821282/230‑1 (MQ=255)

                                                                                                                                                          gAAGGAAAATTCCGGGGTTCCGGTAATCCCCA‑CAA‑GCTG‑GGC‑GTTTAAGGT‑GGC‑GGA‑AATCAG‑C‑AGC‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTa                                                                      <  1:84242/237‑1 (MQ=255)

                                                                                                                                                                   ctcacagggtttgtgaaTACCCACCCA‑GCTG‑GGC‑GTTTAAGTT‑TGC‑GGG‑AATCAG‑C‑AAC‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑CCCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATg                                                            <  1:579891/224‑1 (MQ=255)

                                                                                                                                                                               cgTAATCCCCC‑ACA‑GGATGGGC‑GGTTAGGTT‑TGG‑GGA‑AATAAG‑C‑AGG‑CCCGCCCCTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAAc                                                 <  1:498370/237‑1 (MQ=255)

                                                                                                                                                                                        ca‑cga‑GCAT‑GGC‑‑GTTGAGGTGTGC‑GGA‑AATCAG‑A‑AAC‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc                                      <  1:358178/239‑1 (MQ=255)

                                                                                                                                                                                         cccca‑GCTT‑GGC‑GTTTAGGGT‑TGG‑GGG‑AATCGG‑A‑ATG‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTTCATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc                                      <  1:672513/237‑1 (MQ=255)

                                                                                                                                                                                          cccccgcgt‑GGC‑GGTTAGGGT‑GGG‑GAA‑AAGCAG‑C‑ACG‑CCCGCCACGTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAAGGCCCACG‑GCCCCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc                                      <  2:247855/231‑1 (MQ=255)

                                                                                                                                                                                              ccaacgtggggattAAGGT‑GGC‑GGG‑AACGAG‑C‑AAC‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAATTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCa                                    <  1:526147/227‑1 (MQ=255)

                                                                                                                                                                                                  gcggggggTTAAAGT‑TGG‑GGGAAATCCG‑C‑AAC‑CCCGCCACTTTGACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAg                                 <  1:430526/233‑1 (MQ=255)

                                                                                                                                                                                                                t‑tGC‑GGG‑AAACAG‑C‑ACG‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGt                    <  1:471910/237‑1 (MQ=255)

                                                                                                                                                                                                                    c‑GGG‑AATCAG‑C‑AAG‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGAta               >  1:624129/1‑238 (MQ=255)

                                                                                                                                                                                                                    c‑GGG‑AATCAG‑C‑AAG‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCCCGGCGCCCAAAACGAACTCTTCCAGCACCGGCCCCCCGATCATCTGAATTCCCCCTTCAACCACTGCCCGGCCAAAAATaaaactgccgtacatg               >  2:861609/1‑226 (MQ=255)

                                                                                                                                                                                                                         gaaataG‑C‑ATG‑CCCGCCAGTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACAGCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGaa             <  1:861609/233‑1 (MQ=255)

                                                                                                                                                                                                                         aaaacAG‑G‑AAG‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGaa             <  1:182513/234‑1 (MQ=255)

                                                                                                                                                                                                                           gaaccaagaaG‑CCCGACACTTTTGCCCGATTTTCCGGTCGGGCAGTGAAGTACATCGCTAAAGAAAGGCCCTCG‑GCACAAAAGATTCTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGaa             <  1:835374/230‑1 (MQ=255)

                                                                                                                                                                                                                           aaacgcagacg‑CCCGCCACGTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGaa             <  1:134641/228‑1 (MQ=255)

                                                                                                                                                                                                                           aTCAG‑C‑AAG‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCCCAAACTGAACTCTTGCCGATGCTGGGCCCAGTACACCTGACTGCCGCCTTCAAACGCTGCCGGACCAAAGAGAAACTTGCCCTAGATGAAggg          >  1:286019/1‑237 (MQ=255)

                                                                                                                                                                                                                            attaacctaG‑CCCCCCCCTTTTACCCGATTTTCCGGTGCGGGAGTGAAGTACAGCGCTAAAGAAAGGCCCCCG‑GCACCAAAGATTTTTGAGTT‑ACCGGGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAg            <  2:624129/230‑1 (MQ=255)

                                                                                                                                                                                                                                     g‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCACCAGCTGCCGGACCAAAGATAAAATGTCCGCAGATGAAGTGGTGTAAAc  >  1:451896/1‑239 (MQ=255)

CGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCA‑CCA‑GCAT‑GGC‑GGTTAAGGT‑TGC‑GGG‑AATCAG‑C‑AAG‑CCCGCCACTTTTACCCGATTTTCCGGTGCGGCAGTGAAGTACATCGCTAAAGAAATGCCCACG‑GCACCAAAGATTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAGTGGTGTAAAC  >  NC_000913/3862456‑3862914

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A