Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F9 I0 R1 131 136.1 2723430 98.1% 2671684 229.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,780,895 T→G 10.4% V357G (GTG→GGG)  lldD → L‑lactate dehydrogenase, FMN‑linked

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,780,8950TG10.4% 473.7 / 3.6 163V357G (GTG→GGG) lldDL‑lactate dehydrogenase, FMN‑linked
Reads supporting (aligned to +/- strand):  ref base T (39/99);  new base G (19/2);  total (62/101)
Fisher's exact test for biased strand distribution p-value = 5.97e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 163 total aligned reads displayed.

TGGACGGTGTACTCTCTTCCGCCCGTGCACTGCCTGCTATTGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCC  >  NC_000913/3780664‑3781129
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                            
             ctctTCCGCCCGTGCACTGCCTGCTATTGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGgcg                                                                                                                                                                                                                         <  1:1083908/239‑1 (MQ=255)
                 tCCGCCCGTGCACTGCCTGCTATTGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGCAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGaa                                                                                                                                                                                                                     >  1:1340658/1‑239 (MQ=255)
                 tCCGCCCGTGCACTGCCTGCTATTGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGaa                                                                                                                                                                                                                     >  1:1124674/1‑239 (MQ=255)
                 tCCGCCCGTGCACTGCCTGCTATTGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGGGTGCCTCA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGCGGACgctgg‑ctgcggcgca                                                                                                                                                                                                                     >  2:416739/1‑232 (MQ=255)
                 tCCGCCCGTGCACTGCCTGCTATTGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGGGTAGGTAA‑CCTGGCAAAACTGGT‑CTTAAAAGAGATTGAAAG‑GGCGCGGGAGCCGA‑CTGGcgcgca                                                                                                                                                                                                                     >  2:376819/1‑237 (MQ=255)
                 tCCGCCCGTGCACTGCCTGCTATTGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGGGTAGCTAA‑CCTGCTAAATCTGGT‑CGCAAAAGAGA‑TGAAAGTGGCGATGGCGCTGG‑CTGGcgcgga                                                                                                                                                                                                                     >  2:670288/1‑237 (MQ=255)
                 tCCGCCCGTGCACTGCCTGCTATTGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGGGTAGCCAA‑CCTGGTTAATCTGGC‑CGACAAAGGGA‑TGGAAGAGGCGCTggagcgtacgggggcgaa                                                                                                                                                                                                                      >  2:41358/1‑222 (MQ=255)
                 tCCGCCCGTGCACTGCCTGCTATTGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGACCAGGCGGGTGTAGGTAA‑ACTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGAGGGGAGGAAGCTGA‑CTGGCGCGaa                                                                                                                                                                                                                     >  1:557087/1‑239 (MQ=255)
                   cGCCCGTGCACTGCCTGCTATTGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGGGGAGGTTA‑CCTGTTAAATTTTGT‑CGGAAAAAAGA‑TGGAAGGGGAGGTGACGCTGA‑ACGGGGCGaaaa                                                                                                                                                                                                                   >  2:717811/1‑238 (MQ=255)
                     cccGTGCACTGCCTGCTATTGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTGGGTAA‑ACTTCTAAAACTGAT‑CGAAAAAAAGA‑TGAAAGGGGCGGTGACGACGG‑CTGgccgggaatat                                                                                                                                                                                                                 >  1:41788/1‑230 (MQ=255)
                     cccGTGCACTGCCTGCTATTGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGGTGGTAAGCCTG‑TAAATCTGAT‑CGGAAAAGAGA‑CTAGAGTGGGGAttgaggtctgccgcgcggaaacg                                                                                                                                                                                                                  >  2:432721/1‑217 (MQ=255)
                       cGTGCACTGCCTGCTATTGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGTGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGAt                                                                                                                                                                                                               <  1:331604/239‑1 (MQ=255)
                        gTGCACTGCCTGCTATTGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATc                                                                                                                                                                                                              >  1:381862/1‑239 (MQ=255)
                        gTGCACTGCCTGCTATTGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGGTGAGCTAA‑CCTTCCAAATCTGAT‑TGGAAAAGGAC‑TGGAAGGGGCGATTGAGCTGACCTGGCGCCaacccgt                                                                                                                                                                                                                >  2:402627/1‑233 (MQ=255)
                        gTGCACTGCCTGCTATTGCAGATGCGGTGAAAGGCGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGGGTAGCTAA‑CCTGCTAAATCTGAT‑CGGAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGGGCGAAATCGCTc                                                                                                                                                                                                              >  1:1083312/1‑239 (MQ=255)
                        gTGCACTGCCTGCTATCGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGGGTAGGCAA‑CCTGCTAAAACTTCTCCGAAAAAG‑GG‑TTAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATc                                                                                                                                                                                                              >  2:1286424/1‑239 (MQ=255)
                                    cTATTGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTAc                                                                                                                                                                                                   >  1:1059829/1‑238 (MQ=255)
                                    cTATTGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGGGTAGCTAA‑ACTGCTAAATCTGAT‑CGCAAAAGAGC‑TGAAAGAGGCGATGAGGCTGC‑ATGGCGCGGAAACGAGTAGCGAAAATaa                                                                                                                                                                                                   >  2:1244836/1‑237 (MQ=255)
                                      aTTGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCa                                                                                                                                                                                                <  1:881880/239‑1 (MQ=255)
                                        tGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAg                                                                                                                                                                                              >  1:524584/1‑239 (MQ=255)
                                         gCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGa                                                                                                                                                                                             <  2:1161094/239‑1 (MQ=255)
                                          cAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGGT‑CGAAAAAGAGA‑TGAAAGGGGCGGTGACGCCGA‑CTGGCGCGAAAACGATAAGCGAAATTAAGCAAAAt                                                                                                                                                                                            >  2:1014626/1‑239 (MQ=255)
                                          cAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGGGTAGCTAA‑CCTGCTAAATATGAT‑CGAAAAAGAGA‑TGAAAGTGGGGATGACGCCGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGAt                                                                                                                                                                                            >  1:34621/1‑239 (MQ=255)
                                              tGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTc                                                                                                                                                                                          >  1:645887/1‑237 (MQ=255)
                                              tGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑CGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGc                                                                                                                                                                                        <  1:154576/239‑1 (MQ=255)
                                                ctgTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCt                                                                                                                                                                                       <  2:489526/236‑1 (MQ=255)
                                                  gTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGGGTAGCGAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGGAATCGATCAGCGAAATTACGCAAGAATCGCTggg                                                                                                                                                                                    >  2:1091930/1‑238 (MQ=255)
                                                           gATTTAGGCATTCTTGCGGATAGCTGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGc                                                                                                                                                                            <  1:454921/238‑1 (MQ=255)
                                                           gATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGc                                                                                                                                                                            <  1:51062/238‑1 (MQ=255)
                                                           gATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGc                                                                                                                                                                            <  1:493977/238‑1 (MQ=255)
                                                           gATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGc                                                                                                                                                                            <  1:91689/238‑1 (MQ=255)
                                                           gATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGc                                                                                                                                                                            <  1:947677/238‑1 (MQ=255)
                                                           gATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCt                                                                                                                                                                           <  1:200979/239‑1 (MQ=255)
                                                                    aTTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGGAATTAAGCAAGATTCGCTGGTGCAGGGGCTGGGTAAaga                                                                                                                                                                  >  1:799898/1‑239 (MQ=255)
                                                                    aTTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑ACTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGGGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAaga                                                                                                                                                                  >  1:858030/1‑239 (MQ=255)
                                                                          gCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGGGTAGCTAA‑CCTGCTAAATATGAT‑CGAAAAAGAGA‑TGAAAGGGGGGGTGACGCTGA‑CTGGGGCGAAATCGATCAAAGGAAATACGCCAGATTTGCAGGTGCAGGGGCGGGGGAAAGAGTTg                                                                                                                                                              >  2:1021447/1‑237 (MQ=255)
                                                                            ggATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAGGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTg                                                                                                                                                          <  1:1244836/239‑1 (MQ=255)
                                                                            ggATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTg                                                                                                                                                          <  1:35724/239‑1 (MQ=255)
                                                                            ggATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGGTTAGCTCA‑CCTGCTAAATCTTAT‑CGAAAAAGAGG‑TGAAAGTGGCGATGACCCTGA‑CTGGGGCGATATTGCACAGCGACATATCGCAAGATTCGCTGGTGCCGGGGGTGGGGAAAGAGGTGcca                                                                                                                                                           >  2:84869/1‑237 (MQ=255)
                                                                                   ggAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCa                                                                                                                                                     <  1:428382/237‑1 (MQ=255)
                                                                                   ggAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGAGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCa                                                                                                                                                     <  2:1124674/237‑1 (MQ=255)
                                                                                      aTTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTgg                                                                                                                                                 <  1:1195644/238‑1 (MQ=255)
                                                                                            aaCGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCa                                                                                                                                           <  1:1014626/238‑1 (MQ=255)
                                                                                            aaCGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCa                                                                                                                                           <  1:1091930/238‑1 (MQ=255)
                                                                                            aaCGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCa                                                                                                                                           <  1:427209/238‑1 (MQ=255)
                                                                                                 gCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGGCACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCGAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCg                                                                                                                                      <  2:366398/238‑1 (MQ=255)
                                                                                                               gTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGc                                                                                                                        <  1:1024109/238‑1 (MQ=255)
                                                                                                               gTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCa                                                                                                                       <  2:381862/239‑1 (MQ=255)
                                                                                                                        cgcTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGGGGAGCTAA‑CCTGCTAAATCTGAT‑GGCAAAAGAGA‑GGAAAGTGGCGATGACGCTGA‑CTGGCGCGATATCGATCAGCGGAAATAAGCAAGATTCGGTGGTGCAGGGGGTGGGGAAAAAGTTGCCTGCGGCCCAGGCTCCCATGGCGGAAGGGGAGGCGGCATAGTCGttt                                                                                                              >  2:450173/1‑239 (MQ=255)
                                                                                                                         gcTCGGTGCCGACACCGTACTGCTGGGTCTTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTg                                                                                                             <  1:1281034/239‑1 (MQ=255)
                                                                                                                           tCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTgcg                                                                                                           <  2:827987/239‑1 (MQ=255)
                                                                                                                           tCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTgc                                                                                                            <  1:1021447/238‑1 (MQ=255)
                                                                                                                                  cgtcacCGTACTGGTGGGTCGTCCTTTCGTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAC‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCt                                                                                                     <  2:155641/235‑1 (MQ=255)
                                                                                                                                  cgcaacCGTACTGCTGGGTCTTGCTTTCGTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGGGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCt                                                                                                     <  2:41788/234‑1 (MQ=255)
                                                                                                                                  cGACCCCGTACTGCTGGGTCGTGCTTTCTTGTAGGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCt                                                                                                     <  2:1179132/238‑1 (MQ=255)
                                                                                                                                  cGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCt                                                                                                     <  2:931591/238‑1 (MQ=255)
                                                                                                                                  cGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCt                                                                                                     <  1:1168367/238‑1 (MQ=255)
                                                                                                                                  cGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCt                                                                                                     <  2:1059829/238‑1 (MQ=255)
                                                                                                                                  cGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCt                                                                                                     <  1:162098/238‑1 (MQ=255)
                                                                                                                                  cGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCt                                                                                                     <  1:820549/238‑1 (MQ=255)
                                                                                                                                  cGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCt                                                                                                     <  1:494920/238‑1 (MQ=255)
                                                                                                                                         gTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCGCccccc‑cccca                                                                                             >  1:1114030/1‑236 (MQ=255)
                                                                                                                                             tgctgGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCct                                                                                        <  2:524584/239‑1 (MQ=255)
                                                                                                                                             tgctgGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCct                                                                                        <  1:560175/239‑1 (MQ=255)
                                                                                                                                             tgctgGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCct                                                                                        <  2:1137180/239‑1 (MQ=255)
                                                                                                                                             tgctgGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCct                                                                                        <  2:536032/239‑1 (MQ=255)
                                                                                                                                                tgGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCctct                                                                                      <  2:606950/238‑1 (MQ=255)
                                                                                                                                                tgGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCctct                                                                                      <  1:380449/238‑1 (MQ=255)
                                                                                                                                                tgGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCctct                                                                                      <  1:1007053/238‑1 (MQ=255)
                                                                                                                                                   gTCGTGCGTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTccc                                                                                   <  2:311059/238‑1 (MQ=255)
                                                                                                                                                    tCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCACCCCCAACCCCCTccc                                                                                   >  1:588414/1‑238 (MQ=255)
                                                                                                                                                     cGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTc                                                                                 <  1:525590/238‑1 (MQ=255)
                                                                                                                                                      gTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAg                                                                               <  1:450173/239‑1 (MQ=255)
                                                                                                                                                        gCTTTCTTGTATGCGCTGGCAACAGCGGGACAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAA‑CGAAAAAGAGA‑TGAAAGTTGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAggg                                                                             <  1:292967/239‑1 (MQ=255)
                                                                                                                                                           ttCTTGTATGCGCTGGCAACAGCGGGTCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCATCGAAATTACGCAAGATTCGCTGGTTCAGGGGCTTGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGgaga                                                                          <  2:202854/239‑1 (MQ=255)
                                                                                                                                                              ttGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGga                                                                            <  1:1211186/234‑1 (MQ=255)
                                                                                                                                                                gTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGGAGAGGGGa                                                                     <  1:1346427/239‑1 (MQ=255)
                                                                                                                                                                gTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGGAGAGGGGa                                                                     <  1:416151/239‑1 (MQ=255)
                                                                                                                                                                      gcTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGGAGAGGGGACCGtt                                                                <  2:10774/238‑1 (MQ=255)
                                                                                                                                                                      gcTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTc                                                               <  1:670288/239‑1 (MQ=255)
                                                                                                                                                                        tGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGGGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGGAAAGAGTTGCCTGCGGCACTGGGTCCCCTGGCGGAAGGGAATGCGGCGTAGTCGTTTTCGCCCCCCCA‑CCCCACACCCCTCCCCCCCGGCGAgggggacggccg                                                              >  2:1211186/1‑230 (MQ=255)
                                                                                                                                                                         ggCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgc                                                            <  1:26710/239‑1 (MQ=255)
                                                                                                                                                                         ggCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgc                                                            <  1:432721/239‑1 (MQ=255)
                                                                                                                                                                           cAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg                                                           <  1:717811/238‑1 (MQ=255)
                                                                                                                                                                            aaCAGGCGGTCAGGCGGGTGGAGCTAA‑CCTGCTAAATCTGAT‑CGTAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATGTCGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcgc                                                          <  2:979488/238‑1 (MQ=255)
                                                                                                                                                                            aaCAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCt                                                         <  1:41358/239‑1 (MQ=255)
                                                                                                                                                                                  gggCCAGGCGGGTGTAGCTAG‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑GGAAAGGTGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAATATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtatg                                                    <  2:945816/238‑1 (MQ=255)
                                                                                                                                                                                               gtAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑GGAAAGGGGCGATTACGCTGA‑CGGGCGCGAAAGCGATCAGCGAAAGTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTGCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCAcgc                                       <  2:159617/238‑3 (MQ=255)
                                                                                                                                                                                                   cTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCCAACCCTCCCCCTCCGGGAGAGGGGACCGCTCGGCGCCGTATGTACTCCCCCCctcttga                                   >  1:865412/1‑235 (MQ=255)
                                                                                                                                                                                                    tAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa                                  <  2:513513/238‑1 (MQ=255)
                                                                                                                                                                                                        ccTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCA‑CCCCAACCCTCTCCCTCAGGGGGAGGGGACCGGTCGGCGCTGTATGTACTCCCCCACTCTGAAACGac                              >  1:221757/1‑239 (MQ=255)
                                                                                                                                                                                                         cTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGaca                             <  2:59190/239‑1 (MQ=255)
                                                                                                                                                                                                                      t‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCCGGGAGGGGGGGCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCCCACTCttttt                >  1:36679/1‑239 (MQ=255)
                                                                                                                                                                                                                      t‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATTTACTCCCTCCCTCTGACACGACCCCCCACTCttttt                >  2:1192699/1‑239 (MQ=255)
                                                                                                                                                                                                                      t‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCC‑CCCTAACCCTCCCCCCCAGGGAGAGGGGACAGGTCGGCGCTTCATGTACTCCCCCActcttgaaaggccccccccccttttt                >  1:303846/1‑217 (MQ=255)
                                                                                                                                                                                                                      t‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCA‑CCCCAAACCTCTCCCCCCGGGGGGGGGGGCCGGTCGGCGCCGGATGTACCCCCTCAcccttataagaaccccaccccttttt                >  1:732782/1‑217 (MQ=255)
                                                                                                                                                                                                                                    tGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCg      <  2:858030/237‑1 (MQ=255)
                                                                                                                                                                                                                                     gAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACTCCGCACTCTTTTTTTCTCCCTCGccc   <  1:402627/239‑1 (MQ=255)
                                                                                                                                                                                                                                     gAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCCACCCCCCCCCCTCCAGGGGAGGGGGCCGGTCGGCGCCGTTTGTACTCCCTCACCCCGCAACGACACCCCCCTCTTTTTTTTTcccccccc    >  1:1145514/1‑233 (MQ=255)
                                                                                                                                                                                                                                       aaGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGcccc  <  2:596685/238‑1 (MQ=255)
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                            
TGGACGGTGTACTCTCTTCCGCCCGTGCACTGCCTGCTATTGCAGATGCGGTGAAAGGTGATATAGCCATTCTGGCGGATAGCGGAATTCGTAACGGGCTTGATGTCGTGCGTATGATTGCGCTCGGTGCCGACACCGTACTGCTGGGTCGTGCTTTCTTGTATGCGCTGGCAACAGCGGGCCAGGCGGGTGTAGCTAA‑CCTGCTAAATCTGAT‑CGAAAAAGAGA‑TGAAAGTGGCGATGACGCTGA‑CTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCA‑CCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCC  >  NC_000913/3780664‑3781129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A