Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F1 I0 R1 47 168.9 3047894 98.0% 2986936 264.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,466,711 T→C 3.7% pseudogene (1320/2513 nt) ydbA → pseudogene, autotransporter homolog, interrupted by IS2 and IS30

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,466,7110TC 3.7% 513.0 / 4.1 171pseudogene (1320/2513 nt)ydbApseudogene, autotransporter homolog, interrupted by IS2 and IS30
Reads supporting (aligned to +/- strand):  ref base T (98/61);  new base C (5/2);  total (107/64)
Fisher's exact test for biased strand distribution p-value = 7.10e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 171 total aligned reads displayed.

ATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGG  >  NC_000913/1466425‑1466995
                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                               
ataaCGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTCGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGCGGC‑ACCGGCACGCAGATTAACGGTGACG‑ACGCCACGGCAAACAACAGCGGAAAAACCACCGTTGATGGCAAAGATTCCACGGGCACGAAAATCGc                                                                                                                                                                                                                                                                                               >  1:1369773/1‑289 (MQ=14)
 taaCGGAAAAGTTCTTCACGCATGCGCTCTGGCTGTCGACGCCTGCGGACACTGTATTGATTTTAAAGGAGACCGGGAAGCGGTGGATGGTAATGGGACCATGACCGTCATCGATCAGGAGTATATAGGTAACAACGTTGTTGGCGACGAGGGGGTGGTTAAAAACGGAGGCGAGAGCTGCATAACCAACGGTGGC‑AGCGGGCTGCATATTAACGGTGATA‑ACGCCACGGCAAACAACAATGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTAAGGAAATTGCt                                                                                                                                                                                                                                                                                              <  1:1446021/289‑1 (MQ=9)
     ggAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGTCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCCGGTTGACGGCGACCAGGCGGCTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATAAACGGTGATG‑ACGCCACGTCAAACAAAAACGGCAAAACCACCGATGACGGCAAGGATTCAACCGGTACGGAAATTGCGGGCa                                                                                                                                                                                                                                                                                          >  1:1249531/1‑289 (MQ=255)
      gAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGGACGGAACTTGCTGGCaa                                                                                                                                                                                                                                                                                         >  2:1300376/1‑289 (MQ=255)
                 cAGGACGGCGATCTGGATGTCAGCGGGGGCGGTCACGGTATTGATATAACAGGCGACAGGGTAACGGTGGATAAAAAGGGCACCATGACCGTCACCGATCCGGAGTCAATCGGTAACCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACAAACGGTGGC‑ACCGGCACGGAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAgg                                                                                                                                                                                                                                                                              <  2:1249531/289‑1 (MQ=17)
                     aCGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGAt                                                                                                                                                                                                                                                                          >  2:1447064/1‑289 (MQ=255)
                         cGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGAACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGACGGTTGTCAAGAACGAAGGCTAGACAGCAATCACCACCGGTGGC‑ACCGGCACGCAGATTAACGGTACAG‑ACGCAACGGCTAACAACAACGGCAAAACCACCGTTGACGGCCAGGCTTCCACCGGTACGAAGATGGACGCCAAGAACGGCAATGTGCTACAg                                                                                                                                                                                                                                                                      >  1:487451/1‑289 (MQ=14)
                            tCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGGCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGa                                                                                                                                                                                                                                                                    <  2:301709/288‑1 (MQ=255)
                                      aGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCGGGCAATAACGGGAAGGTGATTCAGGACGGCGACCTgg                                                                                                                                                                                                                                                         >  2:1520946/1‑289 (MQ=255)
                                       gcggcggcgGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGCAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACAGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATCCAGGAAGGCGAACTGGa                                                                                                                                                                                                                                                        >  2:318631/1‑289 (MQ=255)
                                                         ttGGTATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa                                                                                                                                                                                                                                      <  2:973132/289‑1 (MQ=255)
                                                           gATAACCCCGGCTACAGCGCAACTGTTGATAACAAGGGCGCCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACg                                                                                                                                                                                                                                    <  2:1316066/289‑1 (MQ=255)
                                                              atCACCGGCGACATAGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTa                                                                                                                                                                                                                                 <  2:1140901/289‑1 (MQ=255)
                                                               tCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAgg                                                                                                                                                                                                                                                                              <  1:144658/243‑1 (MQ=255)
                                                                 aCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTg                                                                                                                                                                                                                              >  2:1058361/1‑289 (MQ=255)
                                                                 aCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGCATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCCGACTAACGGTGATG‑ACGCCACGGCAAACAACAACGGAAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGATGGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGCTCACGGAAtcg                                                                                                                                                                                                                              >  2:481063/1‑287 (MQ=255)
                                                                 aCCAGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTCAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCCCGCAGATCAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACGGGTACGAAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCAGCCTGGATGTTAACGGCGGCGGGCATGGTGTTg                                                                                                                                                                                                                              >  1:1326470/1‑289 (MQ=17)
                                                                   cGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCAACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACgg                                                                                                                                                                                                                                                                                   >  1:769095/1‑234 (MQ=255)
                                                                      cGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCCGTCGTCAACAACGAAGGCGAGAGCACTATC‑CCCACTGTCTCTTCCACCCCTCAGACT‑CTGCGGACGAACACAACGGCAAACAACACCGGGAACCCCACCGTTGACCGCAAGAATACCACCGATACCGAACTTGCTGGCAATCACGGGAAGGTGATTCAGGACGGCGATCTGCATGTCAGCGTCGACGGCCACGGTAGTGatata                                                                                                                                                                                                                         >  1:909316/1‑288 (MQ=9)
                                                                             tcAACGGTGAATACAAAGGGAACCATGACCGTCGCCGATCCGGAGTCCATCGGTAGCCAGGTGGACGGCGACCAGACGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGc                                                                                                                                                                                                                 <  1:1058361/287‑1 (MQ=255)
                                                                                              gggCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACgg                                                                                                                                                                                                                                                                 <  1:87025/225‑1 (MQ=255)
                                                                                                ggaCCATGACCGTCACCGATCCGGAGTCCAACGGTATCCAGGTTGACGACGAAAAGGCGGTTGATAACAACGAAGGCGAGGGCACCATCACCAAGGGTGGC‑ACCGGCACGCAGATTAATGGTGATG‑AAGCCACGGCAAGCAACAACGGCAAAGCAACCGTTGACGGCAAGAATTGCACCGGTACGGAAATTGCTGGGAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGAt                                                                                                                                                                                               <  1:259598/285‑1 (MQ=14)
                                                                                                gCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa                                                                                                                                                                                                                                      >  2:1268173/1‑250 (MQ=255)
                                                                                                gCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa                                                                                                                                                                                                                                      <  1:1268173/250‑1 (MQ=255)
                                                                                                  aCCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTCAACAACGAAGGCGAGAGCGCCATCACCAATGGCGGC‑ACCGGCACGCAGATCAACGGTAATG‑ACGCCACGGCGAACAACAATGGCAAAACCACTGTTGATGGCAAAGATTCCACGGGTACGAAAATCGCTGGCAATAACGGGAAGGTAAATCTGGAAGGTGGCCTGAATGTCACAGGCGGCGGTCAGGGTGTTGAGAT‑‑CATCGGTGACAGCGGAACGGttaacaaca                                                                                                                                                                                           >  1:217835/1‑281 (MQ=11)
                                                                                                      tGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAggg                                                                                                                                                                                       <  2:86961/289‑1 (MQ=255)
                                                                                                      tGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGACG‑ACGCCACGGCGAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACGGGTACGGAAATCGCTGGCAATAACGGGATGGTAAATCAGGTCGGCGATACGGATCTGACCCTCCGCGGTAACAGAAATGATAT‑‑CACCGGCGAGCGCGCCACGGTGTATAAAAAggg                                                                                                                                                                                       >  1:876007/1‑289 (MQ=17)
                                                                                                      tGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCAATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGCAATTGCGGCCAATAACGGGAATGTGATTCAGGACGGAGGTCTGGCTGTCAGCGGCGGTGGTCATGGTATTGATAT‑‑CACCTGCGACAGCGGAACGGTTGACAACTAgtg                                                                                                                                                                                       >  1:1430451/1‑287 (MQ=17)
                                                                                                      tGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGATCGTCAACAACGAAGGCGAGAGCCCGTTCCCTATACACATC‑TGAGGCTGCCGGCGAAACGGTAGGG‑ATGCCTCGGCGAACAACACCGGCAAAACCACAGATGACGGCAAGGATTCCACCGGTACGGAAATTGTTGGCAATAACGGGAAGGAGATTAAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTAGTCATAC‑‑AACCGGCAACAGCGCAACGGTGGGAAACAAggg                                                                                                                                                                                       >  1:72474/1‑289 (MQ=9)
                                                                                                            tCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGAt                                                                                                                                                                                               <  2:202327/275‑1 (MQ=255)
                                                                                                              aCCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACTGTTGACGGCAAGGATTCCACCGGTACGGAAATCGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGTGGCGGCGGACACGGTATCGATAT‑‑CACCGGCGACAGCGCAACGGTGGAAAACAAGGG‑CACCATGa                                                                                                                                                                              >  2:932881/1‑289 (MQ=255)
                                                                                                              aCCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGACGGTGATTCAGGACGGCGATCTGGATGTCAGCGGAGGCGGTCACGGTATTGATAT‑‑CACCGGCGTCAGCGCAACGGTGGATAACAAGGG‑CACCCTg                                                                                                                                                                               >  2:684289/1‑288 (MQ=255)
                                                                                                              aCCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAACAACGGGAAGGTGATGCAGGACGGCGAGCTGGATGTCAGCGGCGGCGGTCACGGTATTGat                                                                                                                                                                                                                            >  2:1393443/1‑246 (MQ=255)
                                                                                                                cgtccctgcttCCATCGTTATCCAGATTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACAGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGGGATTCAGGACGGCGATCTGGATGGCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGAcc                                                                                                                                                                            <  1:684289/279‑1 (MQ=255)
                                                                                                                  aTCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGa                                                                                                                                                                                                               >  2:381656/1‑253 (MQ=255)
                                                                                                                            cATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGGTTCAGGACGGCAATCTGGATGTCAGAGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CAGGATGGCCGACGCCGATccc                                                                                                                                                                >  2:1240864/1‑288 (MQ=255)
                                                                                                                             aTCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACgg                                                                                                                                                                                                                                                                 <  1:845734/194‑1 (MQ=255)
                                                                                                                             aTCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACgg                                                                                                                                                                                                                                                                 >  2:845734/1‑194 (MQ=255)
                                                                                                                             aTCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGGTAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCgg                                                                                                                                                               >  1:1302603/1‑289 (MQ=255)
                                                                                                                               cGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCTATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTAACG‑ACGCCACGGCAAATAACAACGGCAAAACCACCGTTGACGGAAAGGCTGCCACCGATACGCAAATGACTGGCCAGACGGGTAAGGAGATGGAGGACGGCGATCTCGATGTCAGCGGCGGCGGCAACGGGATTGATAT‑‑CACCGGGGACAGGGAAAGGGGGGAGAACACAGG‑CACCATGCCCGTCaaaggtcacgca                                                                                                                                                             >  1:144925/1‑278 (MQ=255)
                                                                                                                                         gTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTTCGCGGCGGCGGTCAAGGTATTGATAT‑‑CACCGGCGa                                                                                                                                                                                                               >  1:1399773/1‑230 (MQ=255)
                                                                                                                                            gACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACACCGGCGACAGCGCAACg                                                                                                                                                                                                     >  2:735874/1‑239 (MQ=255)
                                                                                                                                            gACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACTGATCCGGAGTCCATCGGTATcc                                                                                                                                                >  2:11574/1‑289 (MQ=255)
                                                                                                                                                 cGACCAGGCGGTTGTTAACAACGAATGCGAGAACGCCCACCCCCGCGGTGGC‑ACCCTCACTAATCGTCGGGAGCGTG‑AGATCAGTATAAAAAACAGCGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGATGGTAATAACGGAAAGGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGA‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGAt                                                                                                                                            <  1:1005327/288‑1 (MQ=11)
                                                                                                                                                   aCCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCCAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACGGGTACCGAAATTGCCGGCAATAACGGGAAGGTGATTCCGGACGGCGAGCTGGCTGTCAGCGGCGGAGGCCCGCGTATTGCTAC‑‑TCTCGGCGACGGCGCAAAGGCCGACAACACGGGCCACAATG‑CCGTTCCCGACCCCGACTCCAGCGGTAAGCAGGTTgg                                                                                                                                         >  1:507183/1‑288 (MQ=14)
                                                                                                                                                   aCCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCACGGATTCCACCGGTACGGAAATTGCGGGCAATAACGGCAAGGTGATTCAGGACGGCGATCTGGATGTCACAGGCGGCGGGCACGGTATTGATAT‑‑CACTGGCGGCAGCTCAAAGATGGATGACAAGGC‑CGCCATGCATGGAACCGTTCAGGAGGCCATCGGTATCCAGATTg                                                                                                                                          >  1:947437/1‑288 (MQ=17)
                                                                                                                                                   aCCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGAc                                                                                                                                                                                                                                                                   <  2:1198619/170‑1 (MQ=255)
                                                                                                                                                             tgttAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCa                                                                                                                                                         <  1:662001/263‑1 (MQ=255)
                                                                                                                                                             tgttAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACg                                                                                                                                       <  2:393777/281‑1 (MQ=255)
                                                                                                                                                             tgttAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACg                                                                                                                                       >  1:393777/1‑281 (MQ=255)
                                                                                                                                                               ttAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCAACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGc                                                                                                                                     <  2:197447/281‑1 (MQ=255)
                                                                                                                                                                      cGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATTACCGTCACCGACCCGGAGTCCATCGGTATCCAGATCGACGGCGACCAGGCCATCGTc                                                                                                                      >  1:1485779/1‑289 (MQ=255)
                                                                                                                                                                      cGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTc                                                                                                                      >  2:576963/1‑289 (MQ=255)
                                                                                                                                                                      cGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTc                                                                                                                      >  2:1392882/1‑289 (MQ=255)
                                                                                                                                                                      cGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGACACGGTATTGATAT‑‑CACCGGAGACAGCGCAACGGTGGAGAAAAAGGG‑CACCATGACCGTACCCGACCAGGAGTCCGTCGGTATCAAGATTGACGGCgtagttgaactcagc                                                                                                                      >  1:1301391/1‑275 (MQ=14)
                                                                                                                                                                      cGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGACCTGGATGTCAGCGGCGGCGGTCACGGTTTTGATCT‑‑CACCGGCGACAGAGCACCGGTGGATAACAAGGG‑CACCATGCCCGTCACCGATCCGGAGTCCAGCGGGATCCAGCTTGACGGACACTAGGcccagggc                                                                                                                      >  1:785241/1‑283 (MQ=14)
                                                                                                                                                                         aGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCg                                                                                                                                                                                                                                                               >  1:754134/1‑152 (MQ=255)
                                                                                                                                                                         aGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCCCGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATACCACGGG‑CACCATGACCGTCACCGATCCGGAACCCATCGGCATCCAGATTGCCGGCGCCCAGGCCaaccgtcc                                                                                                                    >  1:197447/1‑281 (MQ=14)
                                                                                                                                                                         aGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCaa                                                                                                                    <  1:1346607/288‑1 (MQ=255)
                                                                                                                                                                         aGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTAATG‑ACGCCACGGCCAACAACAACGCCATAACCACCGTTGAAGGCAAGGATTCAACCGGTACGGAAATTGCTGGCCATAACGGGAAGGTGCTTCAGGACGGCGATCTGGCTGTTAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACCAGGC‑CACCCTGACCGTCCACGATCCGGAGTCCGTCGGTATCCAGATTGACGGCCACCAGGCCATCGTCGAt                                                                                                                   >  1:348087/1‑289 (MQ=14)
                                                                                                                                                                             gagaGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACg                                                                                                               <  2:72474/289‑1 (MQ=255)
                                                                                                                                                                                       tCACCAACGGGGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTGAGGACGGCGATCTGGATGTCAGCGGCGGCGGTAACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGagag                                                                                                     <  2:909316/289‑1 (MQ=255)
                                                                                                                                                                                       gcACCAACGGTGGC‑ACCGGAAAGCAGATTAACGGGGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGAt                                                                                                                                                                                               <  1:1403098/199‑1 (MQ=255)
                                                                                                                                                                                                 tGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑Ca                                                                                                                                                                                    >  2:1403098/1‑200 (MQ=255)
                                                                                                                                                                                                 tGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTAAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGGAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATGGAAGGCGACGAGGCCACCGTCAATAAGGAAGGCTAGAGCAccgacccc                                                                                           >  1:1306679/1‑282 (MQ=17)
                                                                                                                                                                                                   gC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCaa                                                                                         >  2:824928/1‑289 (MQ=255)
                                                                                                                                                                                                   gC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCaa                                                                                         >  2:920305/1‑289 (MQ=255)
                                                                                                                                                                                                          gCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATggcg                                                                                    >  2:1352495/1‑288 (MQ=255)
                                                                                                                                                                                                             cGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGcggcac                                                                                <  1:1392882/289‑1 (MQ=255)
                                                                                                                                                                                                              gCAGATTAACGGTGATG‑ACGCCACAGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCCGGCAATAACGGGAAGGTGATTCCGGACGGCGATCTGAATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACCGCGCAACGGTGGATAACAAGGG‑CACCATGACAATCACCGATACCGTGTCCATCGGTATCCAGATTGACGGTCACACGGACATCGCGACTCAAGAATACTAGAGCACAATcaacaagcgcgacaac                                                                               >  1:1243381/1‑279 (MQ=14)
                                                                                                                                                                                                                          tgatg‑aCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTCTCCAGATTGACGGCGACCAGGCCATCGTCAATAAAGAAGGCGAGAGCACTATCACCAATGGccgcaccggcaccgagacc                                                                   >  1:103938/1‑282 (MQ=255)
                                                                                                                                                                                                                            atg‑aCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCa                                                                                                   >  1:1233455/1‑255 (MQ=255)
                                                                                                                                                                                                                            atg‑aCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCa                                                                                                   <  2:1233455/255‑1 (MQ=255)
                                                                                                                                                                                                                            atg‑aCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGcggcaccg                                                                              <  1:1044800/276‑1 (MQ=255)
                                                                                                                                                                                                                            atg‑aCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGcggcaccg                                                                              >  2:1044800/1‑276 (MQ=255)
                                                                                                                                                                                                                            atg‑aCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCa                                                                  >  2:1268987/1‑288 (MQ=255)
                                                                                                                                                                                                                            atg‑aCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCa                                                                  >  2:895494/1‑288 (MQ=255)
                                                                                                                                                                                                                            atg‑aCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCAACAATGGCGGCACCGGCACTCAGATCa                                                                  >  2:1349060/1‑288 (MQ=255)
                                                                                                                                                                                                                            atg‑aCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTAAGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAC‑‑CACCGGCGACAGAGAAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGACGCCATCGGTATCCAGATTGACGGCGACCAGGCCATCATCAAGAACGAAGGCGACAGCACTATCATCAATGGCGGCACCGGCACCAAGACCaa                                                                 >  1:526268/1‑289 (MQ=17)
                                                                                                                                                                                                                             tg‑aCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAGTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGCTAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCaa                                                                 <  2:1379226/288‑1 (MQ=11)
                                                                                                                                                                                                                                           aacaacaacGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGGCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCa                                                   <  2:103938/289‑1 (MQ=255)
                                                                                                                                                                                                                                           aacaacaacGGCAAAACCACCGTTGACGGCAAGAATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCa                                                   <  2:348087/289‑1 (MQ=255)
                                                                                                                                                                                                                                                 aacGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGa                                             >  1:1264182/1‑289 (MQ=255)
                                                                                                                                                                                                                                                   cGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATc                                                                                                                                                 >  2:461186/1‑187 (MQ=255)
                                                                                                                                                                                                                                                   cGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATc                                                                                                                                                 <  1:461186/187‑1 (MQ=255)
                                                                                                                                                                                                                                                   cGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGCCCATCGCCAATAACGAAGGCGAGAGCACTAACACCAATGGCGGCACCGGCACTTCGAACAACGGTAACGACGCCAcgccctat                                           >  1:6264/1‑282 (MQ=255)
                                                                                                                                                                                                                                                           ccgccGTTGACGGCAAGGATTCAACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTgg                                   <  2:354899/286‑1 (MQ=255)
                                                                                                                                                                                                                                                            caccGTTGAGGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAGCAGTGGa                                  <  2:6264/289‑1 (MQ=255)
                                                                                                                                                                                                                                                              ccGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGc                                                                                                          <  2:51580/215‑1 (MQ=255)
                                                                                                                                                                                                                                                              ccGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATGCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGTCGGCACCGGCACACAGAACAACGGTGACGACGCCACCGCGAATAACAGGGGaaa                                >  2:765211/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                    aCGGCAAGGATTCAACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTAATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCCGGTGGACCGCGACCAAGCGGTTGTCAACAACGAAGGCGAGAGGACCAACACCAATGGCGGCACCGGCACCCAGATTAACGGTACAGACCACACCGCGAAACACAGCGAGAAAACCaa                          >  1:1118477/1‑288 (MQ=14)
                                                                                                                                                                                                                                                                      ggCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATTAAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGACCTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAAcc                            >  2:644929/1‑285 (MQ=255)
                                                                                                                                                                                                                                                                        cAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGt                       <  2:144925/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                        cAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGAACGTCACCGATCCGGAGTCCATCAGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCCACGGCACTCAGATAAAAGGTAACGACGCCACCGCAAACAACAGGGGAAAAACCACTgat                      >  1:286195/1‑287 (MQ=17)
                                                                                                                                                                                                                                                                                 caacggaacggaaATCGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGaaaa             <  2:1030040/286‑1 (MQ=255)
                                                                                                                                                                                                                                                                                 cACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACt                                                                                                 >  1:1454327/1‑205 (MQ=255)
                                                                                                                                                                                                                                                                                 cACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACt                                                                                                 <  2:1454327/205‑1 (MQ=255)
                                                                                                                                                                                                                                                                                 aaagagtccgtaaaTTGACGGCAATAACGGAAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGaaaa             <  2:48329/278‑1 (MQ=255)
                                                                                                                                                                                                                                                                                  aCCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGAGCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGAGCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGACAATAACGAAGGAGAGAGCACTACCACCAATGGCGGCACCGGCTCTAAAATAACCGGTAACGACGCAACCACGAATAACAGTGGCAAAACCACTGTCGATGGAAAAg            >  1:566343/1‑289 (MQ=18)
                                                                                                                                                                                                                                                                                      gTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGcggcaccg                                                                              <  2:233064/219‑1 (MQ=255)
                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                               
ATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGC‑ACCGGCACGCAGATTAACGGTGATG‑ACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATAT‑‑CACCGGCGACAGCGCAACGGTGGATAACAAGGG‑CACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGG  >  NC_000913/1466425‑1466995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A