Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F9 I0 R1 105 139.1 2894862 97.5% 2822490 224.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,466,729 G→A 4.5% pseudogene (1338/2513 nt) ydbA → pseudogene, autotransporter homolog, interrupted by IS2 and IS30

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,466,7290GA 4.5% 358.1 / 2.7 121pseudogene (1338/2513 nt)ydbApseudogene, autotransporter homolog, interrupted by IS2 and IS30
Reads supporting (aligned to +/- strand):  ref base G (62/53);  new base A (3/3);  total (65/56)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.58e-01

Only 100 of 124 total aligned reads displayed.

CCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACA  >  NC_000913/1466491‑1466958
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                      
 cGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCTACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAgg                                                                                                                                                                                                                                       <  1:984683/239‑1 (MQ=255)
 cGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCCGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGCGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACCGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAAGATTCCACCGGTACCAAAATCGCTGGCAATAACGGGATgg                                                                                                                                                                                                                                       >  2:700121/1‑239 (MQ=17)
    cGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGa                                                                                                                                                                                                                                    >  1:1419366/1‑239 (MQ=255)
          cgcgACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATTGCC‑TCTTATACACATCT‑C‑AC‑GCAGCCGAAGGGTGCTGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGCCAACGATTCCACCGGTACGGAAATTGCGGGCACTAACGGGAAGGGGATTCAgg                                                                                                                                                                                                                              >  2:1247632/1‑239 (MQ=2)
           gcgaCGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGa                                                                                                                                                                                                                             <  1:463496/236‑1 (MQ=255)
           gcAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACGAGGCGGTTGTTAACCACGAACAGGTGTGTATAAGCGACAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGa                                                                                                                                                                                                                             <  2:188713/239‑1 (MQ=17)
                ggTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCg                                                                                                                                                                                                                        <  1:1258496/239‑1 (MQ=255)
                   ggATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGAt                                                                                                                                                                                                                      <  1:557827/238‑1 (MQ=255)
                         cAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCCATTGTGAAGAACGAAGGCGAGAGCGCTATCACCAACGGCGGCAC‑CGG‑C‑AC‑GCAGCTTAACGGTGACGACGCCACCGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACCAAAATTGCGGGCAATAACGGGCAGGTAAATCTGGACGGCAGTCTg                                                                                                                                                                                                                   >  2:493322/1‑235 (MQ=14)
                              gCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCACCATCACCAATGGCGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTAACGACGCCACCGCAAATAACAACGGCA‑AAACCACCGTTGACGGAAAAGATTCCACCGGTACCGAAATCGCGGGCAATAACGGCAGGGCAATTCTGGACGGCGGCCTGGCTGTTAgc                                                                                                                                                                                                          >  2:1158209/1‑239 (MQ=11)
                                    tGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGGTCTGGATGTCAgcggcggc                                                                                                                                                                                                    >  1:1115123/1‑239 (MQ=255)
                                    tGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCACCATCACCAACGGCGGCAC‑CGG‑C‑AC‑TCAGATTAACGGTGACGACGCCACCGCGAATAACACCGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACCAAAATCGCTGGCAATAACGGCATGGTAATTCCGGATGGCAGCCTGCATGTCAccggcggt                                                                                                                                                                                                    >  2:669323/1‑238 (MQ=14)
                                    tGAACGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGCCGACCAGGCGGTCGTTAATAACGATGGCGATAGCGCCATCACCAATCGAGGCAC‑CGA‑C‑CC‑GCAACTCTACGGTGACGGCAGCACTGCTAACAACGACGGCA‑AAACCACCGTTGACGGGAAGGATTCCACCGGTCCGGAAATCGCAGACACTCACGAGAAGGAGATGCTGGAAGGCGCTCTGGCTGCCCacggcgc                                                                                                                                                                                                     >  2:743597/1‑237 (MQ=12)
                                       ccGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCCATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGcggcggcgg                                                                                                                                                                                                  >  1:1402402/1‑238 (MQ=255)
                                        cGTCCCCGTTCCGGAGTCCATGGGTATCCAGCTCGACGGTGACCAGGCGGTCGTCAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑CCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGATGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTc                                                                                                                                                                                                <  2:1225539/239‑1 (MQ=11)
                                        cGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAACTTGCTGGCAATAACGGGCAGGAGATTCAGGACGGCGATCTGGATGTCAGcggcggcgggc                                                                                                                                                                                                >  2:965403/1‑237 (MQ=255)
                                         gtaaCCGAGCCGGATGCCATAGGTATCCAGGTCGACGGTGACAAGGCTGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa                                                                                                                                                                                               <  2:868365/236‑1 (MQ=17)
                                         gTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGGGATTCAGGACGGCGGTCTGGATGTCAGCGGCGGCGGTc                                                                                                                                                                                                >  1:1442642/1‑238 (MQ=255)
                                          tgtccgtaccGGGGTCAAACGGTAGCCGGGTTGACGGCGCCCAGGCGGTTGTTAACAACGAAGGCGGGGACGCCAGCACCAACGGTGGAAG‑GGGTCGGCGGCAGCGTCA‑GGTG‑TG‑TATAAGAGAAAGCAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa                                                                                                                                                                                               <  2:235248/230‑1 (MQ=9)
                                            gccGATCCGGAGTCCATCGGTATCCAGGTCGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa                                                                                                                                                                                               <  1:621474/235‑1 (MQ=255)
                                             ccGATCCGGAGTCCATCGGTGACAAGGTTGGCGCGGACGAGGCGGTTGTTACCAATGAAGGGGAGAGCGCCACCACCAACGGTGGCAC‑CGG‑C‑AC‑GTAGGGTGACGGCGGCAGCGTCA‑GATGAGTATAAGAGGCAGAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGt                                                                                                                                                                                           <  2:433390/239‑1 (MQ=16)
                                                aTCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAgcggcggc                                                                                                                                                                                                    <  1:517431/227‑1 (MQ=255)
                                                aTCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAgcggcggc                                                                                                                                                                                                    >  2:517431/1‑227 (MQ=255)
                                                    ggAGTCCAAAGGTAACCAGATTGTCGGCCACGAGGGGGTTAGTAACAACGAAGGCGAGAACTCCATCACCAACGGTAGCGC‑CGG‑C‑AC‑GCATATTAACGGTGATAACGCCACGGTAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGata                                                                                                                                                                                    <  1:836945/239‑1 (MQ=17)
                                                          cATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa                                                                                                                                                                                               >  2:1100119/1‑222 (MQ=255)
                                                          cATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa                                                                                                                                                                                               <  1:1100119/222‑1 (MQ=255)
                                                           aTCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGAGCTGGATGTTACCGGCGGCGGGCACGGTGTTggtcttacca                                                                                                                                                                              >  2:1173029/1‑229 (MQ=18)
                                                           aTCGGTATCCAGGTTGACGGCGACCAGGCCGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCgg                                                                                                                                                                             <  1:970346/239‑1 (MQ=255)
                                                                  tCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAgc                                                                                                                                                                      >  1:1422667/1‑239 (MQ=255)
                                                                  tCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGGATTGATAACACCGGCGACAga                                                                                                                                                                      >  2:356003/1‑238 (MQ=255)
                                                                       ggtGACGGGGACAAGGGAGGTGGTAACAAAGAAAGGGAGAGCGCCCTCACCAACGCGGGGGC‑CCG‑G‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCaa                                                                                                                                                                  <  2:1396458/236‑1 (MQ=17)
                                                                        ttGACGGCGACTAGGCGATTTTCAACAACGAAGGCGAGAGCTCCATCTCCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGAAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCGCCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAAGACGGCGATCGGGACGTCAGCGTATACGGTCTCGGTATTGATATCACCGGCGACAGCGCAACg                                                                                                                                                                <  2:498478/239‑1 (MQ=17)
                                                                        ttGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCa                                                                                                                                                                   <  2:1422667/236‑1 (MQ=255)
                                                                        tcgACGGCGACAAGGCCGTCGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCaa                                                                                                                                                                  <  2:1275765/235‑1 (MQ=255)
                                                                          gACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGCGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGACGACGCCACCGCAAACAACCACTGCA‑AACCCACCGCTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGAATCAGGACGGCGATCTGGATGCCAGCGGCGGCGGGCACGGTATTGATATAACCGCCGACACGGCAAccgg                                                                                                                                                              >  2:87248/1‑236 (MQ=17)
                                                                               cGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGAt                                                                                                                                                          <  1:873722/238‑1 (MQ=255)
                                                                                     ggCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGCAAGGTAATTCAGGCCGGCAGCCTGGCTGTCAGAGGCGGGGGGCAAGGTGTTGATGACACCGGTGaagcacgccatgataacaaaaaag                                                                                                                                                   >  2:228241/1‑216 (MQ=17)
                                                                                           tgttAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa                                                                                                                                                                                               <  2:1016766/189‑1 (MQ=255)
                                                                                           tgttAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAAAGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa                                                                                                                                                                                               >  1:1016766/1‑189 (MQ=255)
                                                                                                    cGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTc                                                                                                                                     >  2:642980/1‑238 (MQ=255)
                                                                                                    cGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAACGGCGACAGCGCAACGGTGGATAACAAGGGCACCATAACCggc                                                                                                                                     >  2:1433176/1‑236 (MQ=255)
                                                                                                    cGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTAGTGATATCACCGGCGAAAGCGGAACGGTGGAAAACAAGGGCACCATGACCGTc                                                                                                                                     >  1:359896/1‑238 (MQ=255)
                                                                                                    agAAGGCGAGAGCGCCATCACCCACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCCCCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGTACGGCGATCTGGATGTCATCTGCGGCGCTCGCGGTATTGATATCACCAGCCACAGGACAACGGTGGACAACGACGGCaaccagaccaat                                                                                                                                     >  2:688973/2‑227 (MQ=14)
                                                                                                            agagCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACg                                                                                                                                                                                             <  2:547626/174‑1 (MQ=255)
                                                                                                            agagCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACg                                                                                                                                                                                             >  1:547626/1‑174 (MQ=255)
                                                                                                             gagCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCg                                                                                                                           <  1:625174/238‑1 (MQ=255)
                                                                                                             gagCGCCAGCACCAACGGTCGCAC‑CGG‑G‑AC‑CCAGACTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTGGACGGCAAGGATTCCACCGGTACGGGAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGAGCGTC‑ACCGATCCg                                                                                                                           <  2:1402402/238‑1 (MQ=14)
                                                                                                              agCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCaa                                                                                                                                                                  >  1:990892/1‑199 (MQ=255)
                                                                                                                cgcCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAg                                                                                                                        >  1:1300713/1‑238 (MQ=255)
                                                                                                                            cGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATcc                                                                                                           >  1:336853/1‑239 (MQ=255)
                                                                                                                                 gCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATc                                                                                                                                                                                                                     >  2:313246/1‑129 (MQ=255)
                                                                                                                                 gCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATc                                                                                                                                                                                                                     <  1:313246/129‑1 (MQ=255)
                                                                                                                                 gCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGAGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGAtt                                                                                                      >  1:206406/1‑239 (MQ=255)
                                                                                                                                 gCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGACAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGCAAGGTGATTCAGGACGGCGATCTGAATGTCAGCCGCGGCGGTCACGGTATTGCAATCTACGGCGTCAGCGCCACGGTGGACAACAAGGGCACTTTCACCGTC‑ACCGCTCCCGCAGCCATCGGGACCCACAtt                                                                                                      >  2:1348448/1‑239 (MQ=14)
                                                                                                                                      cGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACg                                                                                                  <  1:399825/239‑1 (MQ=255)
                                                                                                                                        g‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTcc                                                                                                                     <  2:499924/218‑1 (MQ=255)
                                                                                                                                        g‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGc                                                                                                >  1:1044916/1‑239 (MQ=255)
                                                                                                                                        g‑C‑AC‑GAAGATTAACGGTGATGACGCCACGGCAAACAACAAAGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGGCCCGGGATTGATTTCACCGGCGACAGCGCAACAGTGGATAAGAAAGGGAACATG‑CCGACGACCGATGCGGAGACCCTCTGCAACCAGAACGACGGc                                                                                                >  2:434114/1‑239 (MQ=14)
                                                                                                                                            aC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGGGGATAACAAGGGCACCATGACCGCC‑ACCGATCCGGAGGCCATCGGTATCCAGGTCGTCGGCg                                                                                               >  2:408483/1‑238 (MQ=255)
                                                                                                                                                   aTTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACg                                                                                                  >  1:543380/1‑229 (MQ=255)
                                                                                                                                                           tgatgaCGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATc                                                                                                            >  2:187363/1‑211 (MQ=255)
                                                                                                                                                           tgatgaCGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATc                                                                                                            <  1:187363/211‑1 (MQ=255)
                                                                                                                                                             atgaCGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGGCGGCAAGGATTCGACCGGAACGGAAATTGGTGACAATAGCGGGAAGAAAATCCAGGACGGCGAGCTGGATGACAGAGGCGGAGGTCAAGGGATTGGTATCACCGGGGGCGGGGACACGGAGAGAAAAAGGGGCACCATCAACCGC‑ACAGAGCCGGAGTACACCGGCATGCAGATTGATGGCGAACCGTCCAtgcacact                                                                              >  2:888853/1‑232 (MQ=9)
                                                                                                                                                             atgaCGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAAt                                                                              >  1:364801/1‑239 (MQ=255)
                                                                                                                                                             atgaCGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAAt                                                                              >  1:670298/1‑239 (MQ=255)
                                                                                                                                                             atgaCGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCCACCAGGCCATCGTCCAt                                                                              >  2:549541/1‑239 (MQ=255)
                                                                                                                                                             atgaCGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGGATTGATATCCCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGACCATCGGTATCCAGATTTACGGCGACCCGGCCATCGTCAAt                                                                              >  2:626569/1‑239 (MQ=255)
                                                                                                                                                                   ccACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCg                                                                                                                 >  1:582498/1‑198 (MQ=255)
                                                                                                                                                                   ccACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCg                                                                                                                 <  2:582498/198‑1 (MQ=255)
                                                                                                                                                                         cacacaacaacGGCC‑AAACCCACGTTGACGGCAAGGATTCCACCGGTACGGAAAATGCTGACAATAACGGGAAGGTGATTCAGGACGGCGATCTGAATGTCAGCGGCGGTTTGCACGGTATTGATATCACCGTCGACAGCGCATAGGCGGATAACAAGGGGACGATGACCGTC‑ACCGATCCGGAGTCCGTCGGGATCCAGATTGACGGCGAACAAGCCATCGTCAATAACGAAGGCgag                                                                  >  2:781479/4‑239 (MQ=17)
                                                                                                                                                                          aaaCAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCgaga                                                                 <  1:1429229/239‑1 (MQ=255)
                                                                                                                                                                           aacaacaacGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGagag                                                                <  1:1220397/239‑1 (MQ=255)
                                                                                                                                                                                 aacGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCCCGGTATTGATATCACCGGCGACAGCGCAACGGTGGGTAAAAAGGGCACAATGACCGTC‑ACCGCACCGGAGACCATCGGTATCCAGATTGGCGCCGACCAGGCCATCGTCAATAAAGAAGGCGAGGTCACTAt                                                          >  2:1106326/1‑239 (MQ=17)
                                                                                                                                                                                 aacGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGAc                                                                                             <  1:429897/204‑1 (MQ=255)
                                                                                                                                                                                 aacGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGAc                                                                                             >  2:429897/1‑204 (MQ=255)
                                                                                                                                                                                   cGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATc                                                         >  1:64239/1‑238 (MQ=255)
                                                                                                                                                                                         aaaCCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAAt                                                   >  1:1256617/1‑239 (MQ=255)
                                                                                                                                                                                         aaaCCACCGTTGACGGAAAGGATTACACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATTACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGACCATCGGTATCAAGATTGACGGCGACCAGGCCATCGTCAATAACAAAGCCGAGAGCACTATGACCaac                                                   >  2:1278036/1‑238 (MQ=17)
                                                                                                                                                                                               ccGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATggcggc                                             >  1:1023629/1‑239 (MQ=255)
                                                                                                                                                                                                 cttGACGGAAAGGATGTCACCGGTACGGAAAGGGCTGGCGATGAAGAGAAGGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGcggcac                                           <  1:247604/238‑1 (MQ=17)
                                                                                                                                                                                                   tGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGcggcaccg                                         <  1:642980/239‑1 (MQ=255)
                                                                                                                                                                                                         cAAGGATTCCACCGGTACGGAAATTGCTGGCCATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACt                                    <  1:1146677/238‑1 (MQ=255)
                                                                                                                                                                                                          aaGGATTCCACCTGTACAGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTc                                   <  2:1442642/238‑1 (MQ=255)
                                                                                                                                                                                                          aaGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCa                                  >  2:547990/1‑239 (MQ=11)
                                                                                                                                                                                                               ttCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATc                              <  1:285969/238‑1 (MQ=255)
                                                                                                                                                                                                                   aCCGGTACGGAAATCGCTGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACg                                                                                                                                                                <  1:649419/105‑1 (MQ=255)
                                                                                                                                                                                                                    ccGGTACGGAAATTGCTGGCAATAGCGGGAAAGTTATTCCGGACGCCGATCGGGATGGCAGCGGGGGCGGGCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGt                        <  1:1104404/239‑1 (MQ=17)
                                                                                                                                                                                                                         aCGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAacga                   <  1:87248/239‑1 (MQ=255)
                                                                                                                                                                                                                          cggaaatcaacggtaaTAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGGCAATAACGAAGGGGAGAGCACGATAACCAATGGCGGACCCGGCCCTCAGATCAACGGGAacggc                  >  2:13823/15‑237 (MQ=11)
                                                                                                                                                                                                                            gAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAacgacg                 >  2:1344702/1‑238 (MQ=255)
                                                                                                                                                                                                                                  gCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCaa                                                                                                                                                                  <  1:1135341/88‑1 (MQ=255)
                                                                                                                                                                                                                                  gCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCaa                                                                                                                                                                  >  2:1135341/1‑88 (MQ=255)
                                                                                                                                                                                                                                  gCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACcgc          >  1:599857/1‑239 (MQ=255)
                                                                                                                                                                                                                                  gCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACCCCCCcg           >  2:414399/1‑238 (MQ=255)
                                                                                                                                                                                                                                   tcagCAATAGCGGGAAGGTGTTTCAGTACGGCGATCTGGAGGTCAGCTGCTGCTGTATCGGTATTGATATCACCGGCGACAGCGCATCGGTGGATAACAAGGGCACCAAGACATTC‑ACCGATCGGGAGCCCAACGGGAGCATAATTGACAGTGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACcgcg         <  2:671009/236‑1 (MQ=17)
                                                                                                                                                                                                                                       aagtgaCGGGAGGGTCATTCAGGACGGGTGGGTGGGGGGGAGCGGCGGATGTCACGGTATTGATAGCACCGGCGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAAt      <  1:130165/233‑1 (MQ=17)
                                                                                                                                                                                                                                         aTAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAAc   <  1:14476/239‑1 (MQ=255)
                                                                                                                                                                                                                                          tAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACa  <  2:336853/239‑1 (MQ=255)
                                                                                                                                                                                                                                           aaCGGGAAGGTGAGTCAGGGACGAGAGCTTGATGTCAGTTGCTGCGGTCGCGGTATTGATAAAACCGGCGACAGCTCAACGGTTGATAACAAGGGCACAATGACCGTC‑ACCGATCCGGGGGCCAGCGGTATCCACATTGACAGCAAGCAGGCGATCGTCAATAACGAAGGCGAGAGCACTAGCACCAAGGGCGGCACCGGCACTCAGATCAGCGGTAACGGCGCCACCGCGAATAAc   <  2:359896/237‑1 (MQ=255)
                                                                                                                                                                                                                                                 aaGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTa                                                                                                                                                                                          <  1:75887/49‑1 (MQ=38)
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                      
CCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAC‑CGG‑C‑AC‑GCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCA‑AAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTC‑ACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACA  >  NC_000913/1466491‑1466958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A