Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F13 I0 R1 24 46.9 828184 99.3% 822386 269.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,466,729 G→A 15.9% pseudogene (1338/2513 nt) ydbA → pseudogene, autotransporter homolog, interrupted by IS2 and IS30

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,466,7290GA15.9% 89.2 / 4.9 36pseudogene (1338/2513 nt)ydbApseudogene, autotransporter homolog, interrupted by IS2 and IS30
Reads supporting (aligned to +/- strand):  ref base G (21/8);  new base A (2/4);  total (24/12)
Fisher's exact test for biased strand distribution p-value = 1.51e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCAC  >  NC_000913/1466467‑1466992
                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                        
gcggcggTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATACAGGTTGACGGAGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TACACCGGTACGGAAATTGCCGGCAAAAACGGGAAGGTTATTCAGGAACGCGACCTGGaggc                                                                                                                                                                                                                                                >  2:312983/1‑286 (MQ=17)
        cACGATATTGATATCACCGGCGACAGCGCAACTGTGGATAACAAGGGCACCATGCCCGTCACCGCTCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGTGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCTTTGCCGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAgcggcg                                                                                                                                                                                                                                        <  1:312983/289‑1 (MQ=255)
              tttGAGATCACCGGCGAAAGCGAAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTAGCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGAACCGGCACGCAGATTAACGGGGATGACGCCACGGAAAACAACAAGGGCAAAAGCAGCGTCGGAGGTAAGGAA‑GACACCGGTACGGAAATTACTGGCAATAACGGAAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑Gt                                                                                                                                                                                                                                  <  2:73482/287‑1 (MQ=17)
                           gCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAg                                                                                                                                                                                                                                             <  2:409884/265‑1 (MQ=255)
                           gCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCAATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAg                                                                                                                                                                                                                                             >  1:409884/1‑265 (MQ=255)
                                       cGGTGGAGAACAAGGGCACCAGGACCGTAACCGATCCGGAGTCCATCGGTATCAAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCa                                                                                                                                                                                                                                <  2:138542/265‑1 (MQ=255)
                                                 cAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGat                                                                                                                                                                                                                      >  1:138542/1‑265 (MQ=255)
                                                    gggCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCTATCACCAATGGTGGCACCGGCACGCAGATTAACGGTTACGACGCCACGGCGAACAACAACGGAAAAACCACCGTTGACGGAAAGGAT‑TACACCGGTACGGAAATCGCGGGCACTAACGGGAATGTGATTCTGGATGGCGACCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATAACATCGGCGACAGCGCAACGGTTGac                                                                                                                                                                                           >  2:228555/1‑288 (MQ=17)
                                                                  tCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTCAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGACGACGCCACCGCAAATAACAGCGGCAAAACCACCGTTGACGGCAAAGAT‑TCCACGGGTACCGAAATTGCTGGCAATAACGGGAAGGTAAATCAGGACGCCTATATACATGTAAGC‑GTGGCGAGGCACGGTATTGTTAAACCCGGCGAGAGCGCCGTGGTGTATAACAAaggaatcaa                                                                                                                                                                             >  2:336426/1‑283 (MQ=255)
                                                                             gAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCAGCCTGACCGTCAcc                                                                                                                                                                   >  1:364916/1‑288 (MQ=255)
                                                                                  cATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGACGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATATCACCGGCGACAGCGCCACGGTGGATAAAAAGGGCACCATGACCGTCACAGATCCg                                                                                                                                                             >  1:132227/1‑289 (MQ=255)
                                                                                   aTCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTAATTCAGGACGGGGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATATCACCGGCGACAGCGCAAAGGTGGATAACCACGGAACGATGACCGTCACCGATCCgg                                                                                                                                                            >  2:411166/1‑289 (MQ=255)
                                                                                          tCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATCGCTGGCAATAACGGGAAGGTGATTCAGGACGGAGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATATCACCGGCGACCGCGCAACGGTGGCTAACAAGGACATCATGACCGTCACAGAACCGGAGTcc                                                                                                                                                       >  1:219691/1‑287 (MQ=255)
                                                                                                  gACGGCTACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCa                                                                                                                                                                                                                                <  2:393450/206‑1 (MQ=255)
                                                                                                  gACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGCTCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATATGACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTAccc                                                                                                                                             >  1:213560/1‑289 (MQ=255)
                                                                                                  gACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGACGACGCCACGGCAAATAACAGCGGCAAAACCACTGTTGACGGAAAGGAT‑TCCACCGGTACCGAAATCGCTGGCAATAACGGGAAGGTGAATGTGGACGGCGACCTGAATGTTACCGGCGGTG‑AGCATGGTATTGAGAGCATTGGTGACAGCGGAACGGTGGACAACAAAGGAACTATGGCTGTTACCGATCCGCAgcctattggcttgc                                                                                                                                             >  2:202533/1‑276 (MQ=255)
                                                                                                  gACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAACGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCa                                                                                                                                                                                                                                >  1:393450/1‑206 (MQ=255)
                                                                                                    cGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGGt                                                                                                                                                                                                                            >  1:357452/1‑208 (MQ=255)
                                                                                                    cGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGGt                                                                                                                                                                                                                            <  2:357452/208‑1 (MQ=255)
                                                                                                    cGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGAAAATTGCGGGCAATAACGGGAGGGTGATTCAGGACGGCGACCTGGATGTCAGCGGCGGCG‑CGCACGGTATTGAGAACACCGGCGACAGCGCCACGGTGGATAACAAGGGCACCATTACCTGCACCGATCCGGAGTCCATTGGGATcccg                                                                                                                                           >  2:129363/1‑287 (MQ=17)
                                                                                                                            cGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAg                                                                                                                                                                                     >  1:271351/1‑223 (MQ=255)
                                                                                                                            cGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAg                                                                                                                                                                                     <  2:271351/223‑1 (MQ=255)
                                                                                                                                        cgcCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTAAATAACGAAGGc                                                                                                       >  2:356491/1‑289 (MQ=255)
                                                                                                                                                   aCGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGCTTGACGGCGACGAGGCCATCCTCAATACACAAGGCGCGCGCACTa                                                                                             >  1:387768/1‑288 (MQ=255)
                                                                                                                                                                                 atgaCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGCTCa                                                               >  1:322768/1‑288 (MQ=255)
                                                                                                                                                                                 atgaCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCa                                                               >  2:27951/1‑288 (MQ=255)
                                                                                                                                                                                 atgaCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGAGTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCa                                                               >  1:91957/1‑288 (MQ=255)
                                                                                                                                                                                                 agacaacGGAAAAACCACCGTGTACGGC‑AGTATGTCCACCGGTACGGAAATTGCGTGCAATAACGGGAAGGTGAGTCAGGACGGCGATCTGCATTTCTGCGGCGTCG‑GTCGCGGTATTGCGAGCACCGGCAAAAGCGCAACGGCGGCAACCTAGGGTACCTTTAAGGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCGATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCAcc                                              <  2:132227/287‑1 (MQ=255)
                                                                                                                                                                                                    gaagtataaggtcaaggTTGACGGGAAAGAT‑TCCACCGGTACGGAAATCACCGGTCATAAGGTGAAAGTGATTCAGGACGGTGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTAATATCACCGGTGACAGCGCAACGGTGGGTAACAAGGGCACCATGACCGTCACCGATCCTGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCa                                                <  2:111872/268‑1 (MQ=11)
                                                                                                                                                                                                                   cGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGCTTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACCCAGATCAACGGTAACGACGCCCCCGCGAATAAAAGTGGaaaa                            >  2:61322/1‑289 (MQ=255)
                                                                                                                                                                                                                      tatccgCAAGGAT‑TCAACCGGTACGGAAATAAACGGTAATAACGGAAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTGACGGTATTGATATCACCGGGGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAAc                          <  2:159854/283‑1 (MQ=14)
                                                                                                                                                                                                                               ggAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGTTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCa                                                <  1:298417/257‑1 (MQ=255)
                                                                                                                                                                                                                               ggAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCa                                                >  2:298417/1‑257 (MQ=255)
                                                                                                                                                                                                                                  t‑tCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGcggcac                                                                             <  2:165953/225‑1 (MQ=11)
                                                                                                                                                                                                                                  t‑tCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGcggcac                                                                             >  1:165953/1‑225 (MQ=11)
                                                                                                                                                                                                                                              cggaaatcaacggtaaTAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCAc  >  2:180109/15‑289 (MQ=11)
                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                        
GCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAT‑TCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCG‑GTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCAC  >  NC_000913/1466467‑1466992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A