Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F28 I0 R1
|
54 |
59.4 |
1320120 |
91.9% |
1213190 |
218.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,466,856 |
A→G |
11.7% |
pseudogene (1465/2513 nt) |
ydbA → |
pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,466,856 | 0 | A | G | 11.7%
| 121.8
/ 8.1
| 53 | pseudogene (1465/2513 nt) | ydbA | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| Reads supporting (aligned to +/- strand): ref base A (23/23); new base G (2/4); total (25/28) |
| Fisher's exact test for biased strand distribution p-value = 6.70e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 |
TTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGTAGCCTGACTGTTACAGGCGGTGCGCATGGTGTTGAGAACATTGGT > NC_000913/1466635‑1467083
|
ttaaggggtaggaCGCCACGGCAAACAACAACGGAAAAGCCACCTTTGACGGCAAGGATTCCAACGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACg < 1:526509/217‑1 (MQ=14)
aCGCCACGGCAAACAACAACGGCAAAACCACCGGTGACGGCAAGGATTCCACCGGTATGGAAATTGCTGGTAATGACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCCCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCa < 2:659883/228‑1 (MQ=255)
caacGGCAAAACCAGCGTTGGCGGCAAGTATTCCACCGGTACGGAAATTGATGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAgg < 2:580078/228‑1 (MQ=255)
agaaaagtatcagagACAGCAAGGAGTCCACCGGAACGGAAATTACGGGCAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCgaga < 2:59320/214‑1 (MQ=14)
acaccccggTTCACGGAAAGTATTCCATCTGTACAGAACATGCTGGCAATAACGGGAAGGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAACGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCa < 2:255561/220‑1 (MQ=17)
ccccctttGACGGTAAGATTTCCAACGGTACCGAAATAAACGGAAATAACGGGAAAGTGATTCAGGACGGCGACCTGGATGTCAGCGGCGGCGGTAACGGTATTGATAACACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTa < 1:513205/222‑1 (MQ=11)
ggATTCCCCCGGGCCGGAAATTGGCGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGcggcac < 2:548064/228‑1 (MQ=255)
cctgTACGGAAATGGGGGGCAAATACGGGAAGGTTGCTCGGGACGGCGGTCTGGATGTCAGCGGCAGAGGTCACGGTATTGATATCCCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACt < 2:8464/224‑1 (MQ=17)
ggTACGGAAATTGCTGGCAATAACGGGAGGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAg < 2:263398/228‑1 (MQ=255)
gTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATAACCAATGGcggcaccggccccccg > 2:448876/1‑221 (MQ=255)
tACGGAAATTGGTGGCAATAACGGGAAGGTGATTCAGGACGGGTATCTGGAGGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACt < 1:448876/223‑1 (MQ=255)
tACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGGATCCAGATTGACGGCGACCAGGCCATGTCCAATAACGAAGGCGAGAGACCTATAACCAATGGcggcaccgggccacaaaa > 1:632025/1‑219 (MQ=17)
attaCGGGAAGGTGATTCAGGTCGGCGTGTTGGAGGTACGTGGCGGCGTTACCGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCa < 2:281808/225‑1 (MQ=17)
aTAACGGAAAAGTTTGTCAGGAAGGGGATCTGGATGGCAGCGGCGGCGGGCACGGTATTGATCTCACCGGCGACTGCGCAGCGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCa < 1:652820/228‑1 (MQ=14)
ggAAGGTGATTCAGGTCGGCGAGCTGTAGGTACGCGGAGGAGATCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACcgcg < 2:392683/227‑1 (MQ=17)
ggATTCAGGGCGGGGTTTTGGGTGTCATGGGGCGCGGTCACGGTTTTGAAACCACCGGCCACAGCGCAACGGGGGATAACAAGGGCTCCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCAGCCAGGCCATCGTCAATAAGGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACa < 1:594216/227‑1 (MQ=17)
cAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCACCGTCCATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCCCTCAGAACAACGGTAAAGACCCGACCCCGAATACCAGTGGa > 2:586194/1‑228 (MQ=17)
cGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCCTCGGTATCCAGGTTGACGGCGACCAGGCCATCGTCAATAACGAAGGAGAGAGCAATCTCACCAATGGCCGCACCCGCACTCCGATCAACGGGAACGACGCCCCCGCGAATAAAAGAGGAAAAAc > 1:336107/1‑228 (MQ=17)
gggATCTGGAGTTCAGCGGGGGGGGTCACGGTTTTGATATCACCGGCGACCGGGAAACGGTGGAAAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAAcc < 1:11891/225‑1 (MQ=18)
gCGATCTGGATGTCAGGGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAAc < 2:422055/226‑1 (MQ=255)
gATGGCAGCGGCGGCGGTCACGGTATTGATATCCCCGGCGACAGCGCAACGGTGGATAACAAGGGCCCCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGAt < 1:242124/228‑1 (MQ=255)
aGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGAAACGACGCCACCCCGAGTAAAAGTGGAAAAACCCCTGTTGATGGaaaa > 2:569154/1‑228 (MQ=14)
gcggcggTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGAGGCACCGGCAGCCCGATCAACCGTAACGACGCCACCGCCACGAACAGAGGaaaaaaacactatgatggcaaaaaac > 1:565389/1‑207 (MQ=17)
cggcggTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAAACACTGTTGGTGTAAAAGATTc > 2:360486/1‑228 (MQ=255)
atatCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGGACCAAAATcg > 2:404897/1‑228 (MQ=255)
aCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGAcc > 2:171459/1‑85 (MQ=33)
aCCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGCCCATCGTCAATAACGTAGGCGAGAGCACTATCACCAATGGCGGCACCGGCCCTCAGATCAACGGTAACGCCCCCACACCGATTAACAGGGCACAAACACCTGTTTTAGGAACAGATTACACGGGTACCAAAATCACggga > 1:180149/1‑227 (MQ=18)
ccGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCa < 1:171459/85‑1 (MQ=33)
cGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGCGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCAACGGCACTCAGACCGACGGCAACGACGCCACCCCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAAATTCCCCGGG‑ACCAAAAACGCGGGCaaa > 1:500480/1‑227 (MQ=21)
cGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGTGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGCTGGAAAAGATTCCACAGGTACCAAAATCGCGGGCaa > 2:446017/1‑228 (MQ=255)
cGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAAACAAGGAAAAACACATGTTGATGGAAAAGATTCCACGGGGACCAAAAtaacggaaaa > 1:337568/1‑219 (MQ=21)
cAGCGCAACGGATGATAACAAGGGCACCATGACCGTCGCCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGAACAGGCCATCGTAAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCgg < 2:604214/228‑1 (MQ=255)
cgcAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGCATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCAt > 2:386143/1‑228 (MQ=255)
cgcAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCCCGGGTACCAAAATCGCGGGCAATATCGGCAt > 2:70285/1‑228 (MQ=255)
cgcAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGAGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAAACCCGGGAAAAATCGGCAt > 1:598775/1‑228 (MQ=255)
cgcAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCAAATAACAGTGGAAAAACCACTGTTGATGGAAAAAAAACCACGGTGACCaaaaacaggggaaaaaacggaat > 1:41528/1‑209 (MQ=18)
ggTGGATAACAAGGGCACCATGACCGGCACCGATCCGGAGTCCATCGGTAGCCAGGTTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCAATATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTaa < 2:336107/227‑1 (MQ=255)
tGGATAACAAGGGAACCCGGACCGGCCCCGATCCGGAGTCCAGCGGTATCCAGATTGACGGCGACCAGGCCAGCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGACACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAAt < 1:586194/227‑1 (MQ=255)
ggtaaaCAAGGGCCCCCTGGCCGGCCCCGAATCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCt < 1:569154/224‑1 (MQ=18)
tAACAAGGGCACCATGGCCCTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGGCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCt < 2:500480/225‑1 (MQ=255)
aaCAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACCGTTGATGGAAAAGATTCCACGGGGACCAAAATCGCGGGCAATAACGGCATTGAAAAACTGGaa > 1:18161/1‑227 (MQ=255)
cAAGGGCCCCCAGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCAAGATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATgg < 2:484789/228‑1 (MQ=255)
gggCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCCCGGGCCATATCGGCATTTGAAATCTGGAGGGTAg > 2:588025/1‑228 (MQ=255)
gggCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACAAAAATCGCGGGCAAAATCGGCATTTCAACTTTGGATGGTa > 2:405464/1‑227 (MQ=255)
gcccccctcccctCACCTATCCGGAGTCCATCGGTATGCAGTATGACGGGGACCAGGCCATCGGCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGTAGc < 1:404897/215‑1 (MQ=255)
gccccATGACCGTCACCGATCCGGAGTCCATCGGTCACCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCCCCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGTAGc < 2:455061/224‑1 (MQ=255)
ccATGGCCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCGCTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGTAGCCTg < 2:180418/227‑1 (MQ=255)
tCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCAATATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGGGAATAACAGGGGGAAAACCAATGTTAATGGAAAAGGTCCACCGGGAACCAAAATTGCGGGCAAAATCGGCATTGTAAAGATGATAGGAACCCTGACTGTTACAg > 1:610127/1‑228 (MQ=21)
aCCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCTGCATTGGAAATCTGGATGGTAGCCTGACTGTTAAAGGc > 1:77458/1‑228 (MQ=255)
ccGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGGCAATAACGAAGGCGAGAGCACTATCACCAAAGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCGCCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCggg < 2:204449/181‑1 (MQ=255)
gAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGAAGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAACATGGATGGTAGCCTGACTGTTACAGGCGGGGGGCa > 2:404319/1‑227 (MQ=255)
cATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGCCAATATCGGCATTGTAAATCTGGAGGTGAGCCTGACTGTTCCAGGCGGGGCGCCTGgggt > 2:344330/1‑228 (MQ=37)
cATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAAAAGTGGAAAAACCACTGTTGATGGCAAAGATTCCACGGGTACCAAAATCGCCGGCAATATCGGCATTGTAAAACTGGGTGGTAACCCGAAGGTTCCAGggggacgtcttggggt > 1:484085/1‑216 (MQ=25)
aTTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGTAGCCTGACTGTTACAGGCGGTGCGCATGGGGTTTAGAACATTggg > 2:76904/1‑227 (MQ=255)
|
TTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGTAGCCTGACTGTTACAGGCGGTGCGCATGGTGTTGAGAACATTGGT > NC_000913/1466635‑1467083
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
