Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F27 I0 R1 322 127.1 2757226 91.8% 2531133 223.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,467,068 T→G 16.4% pseudogene (1677/2513 nt) ydbA → pseudogene, autotransporter homolog, interrupted by IS2 and IS30

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,467,0680TG16.4% 344.3 / 8.8 136pseudogene (1677/2513 nt)ydbApseudogene, autotransporter homolog, interrupted by IS2 and IS30
Reads supporting (aligned to +/- strand):  ref base T (36/71);  new base G (22/6);  total (59/77)
Fisher's exact test for biased strand distribution p-value = 2.69e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 136 total aligned reads displayed.

ATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACC‑AACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGATTTCTCGACCGGGGTAGATCTTAATGGC  >  NC_000913/1466833‑1467302
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                            
aTCCGGAGTCCAGCGGTAACCAGATTGACCGCGACCAGGCCAGCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGtt                                                                                                                                                                                                                                           <  1:995619/239‑1 (MQ=255)
 tCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCACTATCGGCCGTGTAAATCTGGATGGG‑AGCCTGACTGTTACAGGGGGTGGGCATGGGGTT‑g                                                                                                                                                                                                                                         >  2:1146368/1‑239 (MQ=255)
        tCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGtt                                                                                                                                                                                                                                           <  1:1071552/231‑1 (MQ=255)
                tATCCAGATTGACGGAGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGAGCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑gag                                                                                                                                                                                                                                       <  1:770457/226‑1 (MQ=255)
                  tCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGA‑AGCCTGACTGTTACAGGCGGTGGGCATGGGAGT‑GAGAAAATTGGGGGCaaa                                                                                                                                                                                                                        >  2:347247/1‑238 (MQ=38)
                  tCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATGTTAAATTTGGATGGT‑AGCCTGACTGTTACAGGCGGGGGCCAAGGGGTT‑GGGAACATTggcggtc                                                                                                                                                                                                                          >  2:1071552/1‑232 (MQ=37)
                     ggtttGCCGGCGACCAGGCCATCCCAAATAACGAAGGCGGGAGCACTTACACCAAGGGCGGCACCGGCACTCAAACCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAAGCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATGGGTGACAACGGc                                                                                                                                                                                                                     <  2:558457/236‑1 (MQ=255)
                        ttGACGGCGACCAGGCCAACGGCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCa                                                                                                                                                                                                                    <  1:995514/237‑1 (MQ=255)
                          gACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCCCTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGCACCAAAATCGCGGGCAATATCGGCATTTTAAA‑CATGATGGTGAGCCTGCCTGTTACCGGCCGGGCGCAAGTGGTTAGAAAACATGGGTAACagccctataa                                                                                                                                                                                                                 >  2:770457/1‑230 (MQ=25)
                          gACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GGGAACATTCGTTACAACGGCACGGt                                                                                                                                                                                                                >  1:349359/1‑239 (MQ=255)
                           accgCGACCAGGCCATCGTCAATAACGAAGGGGAGAGCACTATCCCCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGtt                                                                                                                                                                                                               <  2:474576/236‑1 (MQ=255)
                            cGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGAGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGGGGGCCAGGTGTT‑GAGAAAAATGGGGACaaaagcccgggga                                                                                                                                                                                                              >  2:435175/1‑228 (MQ=37)
                            cGGCCACCAGGCCCTCGTCAATAACGAAGGCGAGAGCAATATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGtt                                                                                                                                                                                                               <  1:1288766/238‑1 (MQ=255)
                             ggccgccAGGCCATCGTCAATAACGAAGGGCGGAGCACTTGCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCAACCGCGAATAACAGTGGAAAAACCACGGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTaa                                                                                                                                                                                                             <  2:234283/234‑1 (MQ=255)
                              gCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGGGGTGGGCATTGGGGT‑GAGAAAATTGGGGACAAAGGCACGGGTaaa                                                                                                                                                                                                            >  2:966891/1‑238 (MQ=38)
                                 aCCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGGGCCTGGGGTT‑GAGAACATTGGGGACAACGGCACGGTTaaacac                                                                                                                                                                                                         >  1:418405/1‑235 (MQ=255)
                                 aCCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGGGTT‑GAGAAAAATGGGGAAAACGGCACGGGTaaaaac                                                                                                                                                                                                         >  2:781435/1‑239 (MQ=255)
                                   cAGGCCCTCGTCAATAACGAAGGCGAGAGCCATATCCCCAATGGAGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAAcaacaa                                                                                                                                                                                                       <  1:680333/239‑1 (MQ=255)
                                       cgattgTCAAGAACGAAGGCGAGAGCACTATCAGCAAGTGCGGCACAGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGGTGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAGCAAAgg                                                                                                                                                                                                    <  1:365968/233‑1 (MQ=255)
                                       ccATCGGCAATAACGAAGGCGAAAGCACTATCACCAATGGCGGCACAGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACaaa                                                                                                                                                                                                      <  1:817319/236‑1 (MQ=255)
                                           cGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGGACGGTTAACCACAAAGGAGata                                                                                                                                                                                               >  1:1264830/1‑239 (MQ=255)
                                           cGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCAACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTTCGCATGTGGTT‑TGGAACATTGGGGAAAACGGCACGGTTAACAACAAAGGGGata                                                                                                                                                                                               >  1:792108/1‑239 (MQ=255)
                                                 tAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATACCGGGCAATATCGGCATTGTAAATCTGGATGGA‑AGCCTGACTGTTACAGGCGGTGCGAATGGTGTT‑TGGAACATTGTTGGCAAAGGCCAGGGTAAAAACAAAAGAGAAAatgttg                                                                                                                                                                                         >  2:45941/1‑239 (MQ=255)
                                                     ggaGGCGGGGGCACTACACCCAAGGGCGGCCCCGGCCTCCAGATTAACGGGAAGGACCCCCCCGCGAAAAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTc                                                                                                                                                                                     <  2:1184473/237‑1 (MQ=255)
                                                     gAAGGCGAGAGCAGTAACCCCAATGGGTGCAACGGCACTCAGATCAACGGGAACGACGCCACCGGGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTc                                                                                                                                                                                     <  1:38686/239‑1 (MQ=255)
                                                     gAAGGCGAGAGCACTATCCCCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTc                                                                                                                                                                                     <  1:131286/239‑1 (MQ=255)
                                                       aGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGGGTT‑GGGAACCTTGGTGACAACGGCCCGGTTAACAACAAAGGAGGTATTGTTGTTTCCg                                                                                                                                                                                   >  1:1284518/1‑239 (MQ=255)
                                                        ggCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACACGCGGTGCGCATGGGGTT‑TGGAACATTGGTGCCAACGGCACGGTTAACAACCAAGAGAATATTGTTGTTTCCGa                                                                                                                                                                                  >  1:752125/1‑239 (MQ=255)
                                                           gagaGCCCTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATa                                                                                                                                                                                <  1:1151303/238‑1 (MQ=255)
                                                           gagaGCCCTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATa                                                                                                                                                                                <  2:1049806/238‑1 (MQ=255)
                                                           gagaACACTATCCCCAATGGCGGCACCGGCACTCAGAACAACGGTAACGACGCCTCCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATa                                                                                                                                                                                <  1:431507/238‑1 (MQ=255)
                                                                 aCTATCCCCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATc                                                                                                                                                                         <  1:283011/239‑1 (MQ=255)
                                                                          aaTGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGGGTT‑GAGAACATTGGTGACAACGGCCCGGTTAACAACAAAGGGGAAATTGTTGTTTCCGATACTGGATCGATTGGCgg                                                                                                                                                                >  1:212473/1‑238 (MQ=255)
                                                                           ttGGCGGCACCGGCACTCAAATCAACGGTAACGGCGCCCCCGCGAAAAAAAGGGGAAAAACCACGGTTGATGGAAAAGATTCCACGGGTACCAAAAGCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTg                                                                                                                                                               <  2:499989/238‑1 (MQ=255)
                                                                           aTGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTg                                                                                                                                                               <  1:966891/239‑1 (MQ=255)
                                                                           aTGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGGGTT‑GAGAACATTGGTGGCAACGGCACGGTTAACAACAAAGGAGGTATTGTTGTTTCCGAAACTGGATCGATTGGCGt                                                                                                                                                                >  1:499989/1‑238 (MQ=255)
                                                                           aTGGCGGCACCGGCACGCAGAACAACGGTAACGACGCCACCGCGAATCACAGTTGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGTGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGTTCGATTGGCGTg                                                                                                                                                               <  1:36073/239‑1 (MQ=255)
                                                                             ggcggcACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GGGAACCTTGGTGAACACGGCACGGTTAACCAAAAAGGAGGTATTGTTTTTTCCGATACTGGCGCGGTTggggggc                                                                                                                                                              >  2:748801/1‑233 (MQ=255)
                                                                                ggcaccggcacTCAGATCAACGGTAACGACGCCCCCGCGAATAACAGTGGAAAAACCACGGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGTGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCtca                                                                                                                                                           <  1:702233/238‑1 (MQ=255)
                                                                                cgccacggcacTCAGATCAACGGTAACGGCGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCtca                                                                                                                                                           <  1:45941/233‑1 (MQ=255)
                                                                                 gcaccggcacTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGGGGCCATGGTGTT‑GAGAACTTTGGGGACAACGCGACGGGTAACACAAAAGGGGATATTTTTTTTTCCGGTAAGCGATCGGTTggggggtttacg                                                                                                                                                         >  2:724137/1‑229 (MQ=255)
                                                                                   accggcacTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCCTTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGGGAT‑GAGAACACTGGGGAGAACGGCCCTGTTTACACACAAGGGGACATTGTTTGTTCCGCAACTGGGATGTTTGGGGGGCTCACCaa                                                                                                                                                       >  2:142479/1‑239 (MQ=255)
                                                                                   accggcacTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGGGTT‑GAGAACATTGGTGACAACGGCACGGTTAAAAACAAAAGGGGAATTGTTGTTTCCGATACTGGATCGATTGGCGGGCtcatta                                                                                                                                                        >  1:810030/1‑236 (MQ=255)
                                                                                         ccTCAAATCAAAGGTAACGACGCCACCGAGAATAACAGGGGAAAACCCAATGGTTATGGAAAAGATTCCCAGGGTACCAAAATCGCGGGCAAGTGCGGCATTGTAAATCTGGATGGT‑AGCCTGGCTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGTCAACGGCGCGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGa                                                                                                                                                 <  2:970059/238‑1 (MQ=255)
                                                                                          cTCAGATCAACGGTAACGACGGCAACGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGa                                                                                                                                                 <  1:991336/238‑1 (MQ=255)
                                                                                              aataaaCGGTAACGACGCCACCGCGAATAACGGTGGAAAAACCACTTTTGATGGAAAAGAGTCCACGGGTACCAAAATCACTGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTAACTGTTACAGGCGGTGCGCATGGTGGT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAggggg                                                                                                                                            <  2:358719/235‑1 (MQ=255)
                                                                                                ctcaCGGTAACGGCGGCACCGGGAATAACAGTGGAAAAACCACTTTTGATGGAAAAGATTCCACGGGTAACAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAggggg                                                                                                                                            <  1:954532/234‑1 (MQ=255)
                                                                                                ataaCGGGAACGACGCCACCGCGAAAAACATGGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGGCTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAggggg                                                                                                                                            <  2:1284518/235‑1 (MQ=255)
                                                                                                  aaCGGTAAGGACGCCAACGGGAATAAACGTGGAAAAACGAATGTTGATGGAAAAGATTCCATGGGTACCAAAATGGCGGGCAATATCGGCAATGTAAATCTGGATGGT‑AGCCTGACTGTTACAGACGGTGCGCATGGTATT‑GAAAAAATTGGTGACAACGGTACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCAGCAACGGTGAGGGGGCAAc                                                                                                                                        <  1:114745/239‑1 (MQ=255)
                                                                                                   aCGGTAACGACGCCCCCGGGAATAACAGTGGAAAAACCCCGGTTGATGGAAAAGGTTCCACGGTGAGCAAAATCGCGGGCAATATCGGACTTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACa                                                                                                                                       <  2:168445/239‑1 (MQ=255)
                                                                                                   aCGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATAGCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACa                                                                                                                                       <  1:901957/239‑1 (MQ=255)
                                                                                                    cGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGAAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGGGTT‑GAGAACATTGGTGGCAACGGCCCGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCCCATCAACGTGCAGGGGGCAACAg                                                                                                                                      >  1:60313/1‑239 (MQ=255)
                                                                                                       tAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGGCAGGGGTT‑GTGAACATTGGGGGCAACGGACCGGGTAACAACAAAGGAGAGATTGTTGTTTCCGCAAATGGGTGCATTGGGCGGCTCATAAAAgggggggggggaccaaaat                                                                                                                                   >  2:901957/1‑230 (MQ=255)
                                                                                                        aaCGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATc                                                                                                                                  <  2:41977/239‑1 (MQ=255)
                                                                                                         acgacgCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGGGCGCATGGGGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACCAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGGGCTCCTCAACGGGGGAGGGGGAAAAGTAAcc                                                                                                                                 >  1:657350/1‑239 (MQ=255)
                                                                                                              gCCACCGCGAATAACAGGGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATa                                                                                                                             <  2:168194/238‑1 (MQ=255)
                                                                                                                cccccggAATAACAGGGGAAAAACCACGGTGGGTGGAAAAATTTCCACGGGTACCAAAATCCGGGAAAAAATCGGGGTTTGAAATCGGGATGGT‑AGCCTGACTGTAACAGGCGGTGCGCATGGTGAT‑GGGAGCATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATATTGGATCGATTCGCGTGCTCAACAACGGTGAGGGGGCAACAGTATCCAATACgg                                                                                                                          <  2:872195/233‑1 (MQ=255)
                                                                                                                 cccGGGAATAACAGGGGAAAAACCATTGTTGGTGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACggg                                                                                                                         <  2:418405/238‑1 (MQ=255)
                                                                                                                 aCCGCGAATAACAGTGGAAAAACCACTTGTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACggg                                                                                                                         <  1:142479/239‑1 (MQ=255)
                                                                                                                        aTAACAGGGGAAAAACCCCTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGtt                                                                                                                  <  1:1146368/239‑1 (MQ=255)
                                                                                                                                 gAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTc                                                                                                                                                                                     >  2:1223361/1‑163 (MQ=255)
                                                                                                                                 gAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTc                                                                                                                                                                                     <  1:1223361/163‑1 (MQ=255)
                                                                                                                                 gAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGTCGGGCTCATCAACGGGGAGGGGGCAACAGTATCCAAATCGGGGGCAGTTAACGTTTGc                                                                                                         >  1:238623/1‑239 (MQ=255)
                                                                                                                                 gAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTAACCAAAACGGGGGATGTTAACGTTAGc                                                                                                         >  1:269393/1‑239 (MQ=255)
                                                                                                                                    aaaCCGCTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCCTGGTGTT‑GGGAACATTGGTGACAACGGCACGGTTAACAACAAAGGTGATATTGTTGTTTTCGGATCTGGCTCGATTGGCGGGCTCCTCAACCGTGAGGGGGCCACACAATCAAAAAAGGGTAGGGTTAAGGTTaaaaag                                                                                                      >  2:408104/1‑234 (MQ=255)
                                                                                                                                           ttttGATGGAAAAGATTCCCCGGGTACCAAAAGCGCGGGCAATATCGGCATGTTAAATTTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGa                                                                                               <  2:11045/237‑1 (MQ=255)
                                                                                                                                           tGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGa                                                                                                                                                                       >  2:1139194/1‑167 (MQ=255)
                                                                                                                                           tGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAAAGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAAAAGTATCCAATACGGGTGATTTTAACGTTTGCAATGAAGCGa                                                                                               >  1:1006468/1‑239 (MQ=255)
                                                                                                                                             ttaaTGGAAAAGATTCCACGGGTACCAAAAGCGCGGGCAATATCGGCATTGTAAATCTGAATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACa                                                                                             <  1:874757/236‑1 (MQ=255)
                                                                                                                                             ttGATGGAAAAGATTCCACGGGTTCCAAAATCGGGGGCAATATCGGCATTGTAAATCGGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACa                                                                                             <  1:716458/239‑1 (MQ=255)
                                                                                                                                             ttGAGGGAAAAGGTTCCAAGGGTACCAAAATCGCGGGGAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACa                                                                                             <  1:149916/239‑1 (MQ=255)
                                                                                                                                             gtGATGGAAAAGATTCCACGGGTACCATAATCGCGGGCAATAGCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTGACAGGCGGTGCGCATGGTGTT‑GAGAAGATTGGTGACAACGGCACGGTTAATAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGTTGTTAACGTTAGCAATGAAGCGACa                                                                                             <  1:508769/238‑1 (MQ=255)
                                                                                                                                                     aaaGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTACAAACAAAGGAGAAATTGTTGTTTCCGATCCTGGGTCGATTGGCGTGATCATCAACGGGGAAGAGGGCACAGTATCCAAAACGGGGGTTGTTAAATTTAGCAAAGAAGCGAAAgggggaag                                                                                     >  2:549710/1‑234 (MQ=255)
                                                                                                                                                         aTTCCACGGGTACCAAAATCGGGGGAAATTTCGGGTTTGTAAATCTGGATGGG‑AGCCTGACTGTTAACGGCGGTGCGCATGGGTTT‑GAGAACATTGGTGAAAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATc                                                                                 <  2:657350/239‑1 (MQ=255)
                                                                                                                                                          ttCCACAGGTACCAAAATCGGGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATca                                                                                <  1:615539/239‑1 (MQ=255)
                                                                                                                                                             ccggggAACCAAAATCCGGGGCCATAGTGGCATTGTAACTGTGGAGGGT‑AGCCTGACTGTTACAGGCGGTGGCCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGAGATTGGTGTTTCCTATACTGGATCGATTGGCGTGCGCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCAcaa                                                                             <  2:1264830/236‑1 (MQ=255)
                                                                                                                                                                                      agcGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACC‑AACAGTGGGAAGGTTTCGCTggc                                                   <  1:408104/237‑1 (MQ=255)
                                                                                                                                                                                         ggCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACC‑AACAGTGGGAAGGTTTCGCTggcagg                                                <  1:748801/239‑1 (MQ=255)
                                                                                                                                                                                         ggCATTGTAAATCGGGATGGT‑TGCCTGACTGTTACAGGGCGTGCGCATGGGTTT‑GAGAACCTTGGTGACAACGGCCCGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACC‑AACAGTGGGAAGGTTTCGCTggcagg                                                <  1:704786/239‑1 (MQ=255)
                                                                                                                                                                                           cATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGGGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAAAAGTATCCAATACGGGGGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACC‑AACAGTGGGAAGGTTTGGCTggcaggca                                              >  1:123914/1‑239 (MQ=255)
                                                                                                                                                                                               gTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTTGCGTGCTCATCAACGGTGAGGGGGCCACAGTATCCAATACCGGGGGTGTTAACGTTAGCAATGAAGGGCCAGGGTTCAGACACCCAACCAAACAG‑GGGAAGGTTTCGCTGGCAGGGAGTAt                                          >  2:1199855/1‑239 (MQ=255)
                                                                                                                                                                                                        gATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACa                                                                                             >  1:845561/1‑180 (MQ=255)
                                                                                                                                                                                                        gATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACa                                                                                             <  2:845561/180‑1 (MQ=255)
                                                                                                                                                                                                          tGGT‑AGCCTGACTGTTACAGGCGGTTCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACCACCAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCTTGCTCATCAACGGTGAGGGGGCCACAGCATTCAATCAGGGGGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATTACACCA‑CACAGGGGGAAGGTTTCGCTggcggggcaaatggaggtggggg                               >  2:636386/1‑222 (MQ=255)
                                                                                                                                                                                                          gggT‑GGCCTGACTGTTAAGGGGGGTGCGGAGGGGTTT‑GAGAAAATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACC‑AACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGc                                <  2:264838/237‑1 (MQ=255)
                                                                                                                                                                                                                     aCTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACCTTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGAACGATTGGCGTGCTCCTCAACGGTGAGGGGGCAACAGTAACCAATAAGGGGGAGGTTAACGTTAGCAATGAAGCGCACGGGTTCGACATCCCAACC‑AACACAGGGAAGGGTTTCCTGGGAGGCAGAATACAGGTgggggggtttacggc                     >  2:726633/1‑227 (MQ=255)
                                                                                                                                                                                                                     aCTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACC‑AACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGATTTCTCGAc                     <  1:435175/239‑1 (MQ=255)
                                                                                                                                                                                                                      cttttACAGGCGATGCGCATGTGGTT‑TAGAACATTGGGGACAACGGCACGGTTACCAAAAAAGGATATATTGTTGTTTCCGATACTGGAGCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACC‑AACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGATTTCTCGAc                     <  1:881500/235‑1 (MQ=255)
                                                                                                                                                                                                                           aCAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGGGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCAACCCAACC‑AACAGAGGGGAGGTTTCGCTGGCGGGCAGTAAGACGGTTGGCGATTTCTCGACCggggg               >  2:391438/1‑238 (MQ=255)
                                                                                                                                                                                                                           aCAGGCGGTGCGCATGGTGTT‑GAGAACATTGGGGACAACGGCACGGGTAACAACAAAGGGGATATTGTTGTTTCCGATACTGGATCGGTTGGCGTGCACATCAACGGTGGGGGGGCAACAGTATCCAATACGGGGGATGTTAACGTTAGCAATGAAGCGACCGGGTTCAGCATCCCAACC‑AACAAGGGGAAGGGTTGCCTGGACGGGAGTATGCAGGTGGGCGATTTTTCGCCCggggg               >  2:242515/1‑238 (MQ=255)
                                                                                                                                                                                                                               gCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGGTACTGGATCGATTGGCGTGCACATCAAAGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACC‑AACAGTGGGCAGGTTTCGCTGGCATGCAGTATGCAGGGTGGCGATTTCTCGAACGGGGTAgct           >  1:101170/1‑237 (MQ=255)
                                                                                                                                                                                                                                cGGTGCGCATGGTTTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACC‑AACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGATTTCTCGACCGGGGTAg             <  1:246719/236‑1 (MQ=255)
                                                                                                                                                                                                                                   tGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGCGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACC‑AACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGGGGGCGATTTCTCGACCGGGGGAGAACTTa       >  2:1102197/1‑239 (MQ=255)
                                                                                                                                                                                                                                   tGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATc                                                                                 <  2:377839/166‑1 (MQ=255)
                                                                                                                                                                                                                                   tGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACC‑AACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGCTTTCTCGACCGGGGGAGATCTTa       >  1:863226/1‑239 (MQ=255)
                                                                                                                                                                                                                                   tGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACC‑AACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGATTTCTCGACCGGGGGAGATCTTa       >  1:951450/1‑239 (MQ=255)
                                                                                                                                                                                                                                   tGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGGATCCAATACGGGGGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACC‑ACCACTGGGAAGGTTTCACTGGCAGGCAGTATGCAGGTTGGCGAATTCTCGACCggggggaaatcaa       >  2:78566/1‑230 (MQ=255)
                                                                                                                                                                                                                                   tGCGCACGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGGGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGGGACAGGGTTCAGCATCACAACC‑AACAGTGGGAAGGTTTGGCTGGCAGGCCGGATTCAGGTTGGGGCATTCTCGACCGGGGGAGAGCTTa       >  2:58827/1‑239 (MQ=255)
                                                                                                                                                                                                                                        aTGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACC‑AACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGATTTCTCGACCGGGGTAGATCTTAATGGc  <  1:58827/239‑1 (MQ=255)
                                                                                                                                                                                                                                         tGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACC‑AACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGATTTCTCGACCGGGGTAGATCTTAATGGc  <  1:316239/238‑1 (MQ=255)
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                            
ATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAAAATCGCGGGCAATATCGGCATTGTAAATCTGGATGGT‑AGCCTGACTGTTACAGGCGGTGCGCATGGTGTT‑GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACC‑AACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGATTTCTCGACCGGGGTAGATCTTAATGGC  >  NC_000913/1466833‑1467302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A