mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 5,439 | A→C | 25.7% | H69P (CAC→CCC) | yaaX → | DUF2502 family putative periplasmic protein |
| RA | 18,243 | A→G | 11.3% | E252G (GAG→GGG) | nhaA → | sodium‑proton antiporter |
| RA | 37,255 | A→C | 19.0% | G190G (GGT→GGG) | caiC ← | putative crotonobetaine/carnitine‑CoA ligase |
| RA | 37,289 | A→G | 11.5% | L179P (CTC→CCC) | caiC ← | putative crotonobetaine/carnitine‑CoA ligase |
| RA | 52,342 | A→C | 9.2% | V30G (GTG→GGG) | rsmA ← | 16S rRNA m(6)A1518, m(6)A1519 dimethyltransferase, SAM‑dependent |
| RA | 57,545 | T→G | 12.2% | V61G (GTG→GGG) | djlA → | membrane‑anchored DnaK co‑chaperone, DNA‑binding protein |
| RA | 71,877 | A→G | 20.8% | E176G (GAG→GGG) | yabI → | DedA family inner membrane protein |
| RA | 81,736 | A→G | 7.9% | S75P (TCG→CCG) | leuB ← | 3‑isopropylmalate dehydrogenase, NAD(+)‑dependent |
| RA | 90,671 | T→G | 10.5% | V193G (GTG→GGG) | rsmH → | 16S rRNA m(4)C1402 methyltransferase, SAM‑dependent |
| RA | 111,197 | C→G | 14.4% | R52G (CGT→GGT) | mutT → | dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 117,480 | C→G | 8.1% | A24P (GCC→CCC) | ppdD ← | putative prepilin peptidase‑dependent pilin |
| RA | 120,299 | A→C | 14.9% | V418G (GTG→GGG) | aroP ← | aromatic amino acid transporter |
| RA | 140,781 | T→G | 10.1% | T149P (ACC→CCC) | gcd ← | glucose dehydrogenase |
| RA | 167,691 | A→C | 13.1% | T70P (ACT→CCT) | fhuA → | ferrichrome outer membrane transporter |
| RA | 173,223 | A→G | 8.3% | S588G (AGT→GGT) | fhuB → | iron(3+)‑hydroxamate import ABC transporter permease |
| RA | 175,537 | T→G | 17.8% | V144G (GTG→GGG) | clcA → | H(+)/Cl(‑) exchange transporter |
| RA | 230,100 | A→C | 9.1% | V261G (GTG→GGG) | yafC ← | LysR family putative transcriptional regulator |
| RA | 243,044 | T→C | 9.3% | E87G (GAG→GGG) | fadE ← | acyl coenzyme A dehydrogenase |
| RA | 249,538 | T→G | 26.4% | pseudogene (533/1713 nt) | lfhA ← | pseudogene, flagellar system protein, promoterless fragment, flagellar biosynthesis |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 286,013 | A→C | 12.5% | T207P (ACC→CCC) | yagG → | CP4‑6 prophage, putative sugar transporter |
| RA | 300,989 | A→G | 9.7% | L300P (CTC→CCC) | paoB ← | PaoABC aldehyde oxidoreductase, FAD‑containing subunit |
| RA | 309,685 | A→G | 3.5% | D114D (GAT→GAC) | ecpB ← | ECP production pilus chaperone |
| RA | 334,255 | T→C | 10.9% | E60G (GAG→GGG) | yahB ← | putative DNA‑bindng transcriptional regulator |
| RA | 335,249 | G→A | 8.1% | intergenic (‑227/‑31) | yahC ← / → yahD | putative inner membrane protein/ankyrin repeat protein |
| RA | 352,846 | T→G | 7.1% | C47W (TGT→TGG) | prpE → | propionate‑‑CoA ligase |
| RA | 375,176 | A→G | 18.5% | intergenic (+295/‑283) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 378,573 | A→C | 13.1% | G333G (GGT→GGG) | frmA ← | alcohol dehydrogenase class III, glutathione‑dependent formaldehyde dehydrogenase |
| RA | 380,139 | A→C | 12.3% | V235G (GTG→GGG) | yaiO ← | outer membrane protein |
| RA | 386,014 | T→G | 11.2% | G261G (GGT→GGG) | tauA → | taurine ABC transporter periplasmic binding protein |
| RA | 388,319 | C→G | 16.3% | R175R (CGC→CGG) | tauD → | taurine dioxygenase, 2‑oxoglutarate‑dependent |
| RA | 388,772 | T→C | 10.9% | E319G (GAG→GGG) | hemB ← | 5‑aminolevulinate dehydratase (porphobilinogen synthase) |
| RA | 402,435 | C→A | 9.2% | A230E (GCA→GAA) | phoA → | bacterial alkaline phosphatase |
| RA | 429,830 | T→G | 15.4% | V109G (GTG→GGG) | secF → | SecYEG protein translocase auxillary subunit |
| RA | 429,854 | T→G | 12.5% | V117G (GTG→GGG) | secF → | SecYEG protein translocase auxillary subunit |
| RA | 433,649 | T→G | 36.6% | G65G (GGT→GGG) | ribD → | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| RA | 470,807 | A→G | 4.9% | N58D (AAC→GAC) | mdlB → | putative multidrug ABC transporter ATPase |
| RA | 474,784 | C→G | 5.3% | A126A (GCG→GCC) | tesB ← | acyl‑CoA thioesterase 2 |
| RA | 489,597 | T→G | 9.9% | V1021G (GTG→GGG) | mscK → | mechanosensitive channel protein, intermediate conductance, K+ regulated |
| RA | 495,599 | T→G | 10.4% | G160G (GGT→GGG) | htpG → | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent, heat‑shock protein, ATPase |
| RA | 511,938 | T→C | 10.4% | S100P (TCA→CCA) | glsA → | glutaminase 1 |
| RA | 518,934 | A→C | 17.6% | S72R (AGT→AGG) | ybbO ← | putative oxidoreductase |
| RA | 525,571 | T→G | 11.4% | W771G (TGG→GGG) | rhsD → | Rhs protein with DUF4329 family putative toxin domain, putative neighboring cell growth inhibitor |
| RA | 540,546 | C→T | 11.6% | intergenic (+38/‑19) | allB → / → ybbY | allantoinase/putative uracil/xanthine transporter |
| RA | 540,600 | A→T | 10.1% | L12F (TTA→TTT) | ybbY → | putative uracil/xanthine transporter |
| RA | 540,610 | C→T | 9.0% | Q16* (CAG→TAG) | ybbY → | putative uracil/xanthine transporter |
| RA | 540,632 | G→T | 13.3% | C23F (TGC→TTC) | ybbY → | putative uracil/xanthine transporter |
| RA | 542,153 | A→G | 15.9% | E89G (GAG→GGG) | glxK → | glycerate kinase II |
| RA | 613,283 | A→G | 13.5% | I183V (ATT→GTT) | fes → | enterobactin/ferrienterobactin esterase |
| RA | 647,210 | A→C | 18.4% | G100G (GGT→GGG) | citG ← | 2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |
| RA | 650,331 | T→G | 12.8% | T54P (ACC→CCC) | citE ← | citrate lyase, citryl‑ACP lyase (beta) subunit |
| RA | 693,429 | T→A | 9.6% | intergenic (‑51/+102) | ybeZ ← / ← miaB | heat shock protein, putative NTPase, PhoH‑like protein/tRNA‑i(6)A37 methylthiotransferase |
| RA | 706,050 | Δ1 bp | 5.7% | intergenic (+160/‑43) | nagE → / → glnS | N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components/glutamyl‑tRNA synthetase |
| RA | 726,177 | A→C | 13.1% | V287G (GTG→GGG) | kdpB ← | potassium translocating ATPase, subunit B |
| RA | 740,177 | A→G | 10.2% | E224G (GAG→GGG) | phr → | deoxyribodipyrimidine photolyase, FAD‑binding |
| RA | 751,998 | C→A | 10.0% | A58S (GCG→TCG) | ybgQ ← | putative outer membrane protein |
| RA | 753,618 | T→G | 8.9% | H284P (CAC→CCC) | gltA ← | citrate synthase |
| RA | 758,596 | G→C | 14.6% | intergenic (+191/‑110) | sdhB → / → sucA | succinate dehydrogenase, FeS subunit/2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
| RA | 806,020 | A→C | 7.5% | V421G (GTG→GGG) | ybhC ← | acyl‑CoA thioesterase, lipoprotein |
| RA | 816,752 | T→A | 11.8% | intergenic (‑105/‑292) | ybhK ← / → moaA | putative CofD superfamily transferase/molybdopterin biosynthesis protein A |
| RA | 817,807 | A→C | 12.0% | D255A (GAC→GCC) | moaA → | molybdopterin biosynthesis protein A |
| RA | 840,656 | A→G | 14.1% | T292T (ACT→ACC) | fiu ← | catecholate siderophore receptor |
| RA | 845,227 | A→C | 17.6% | V85G (GTG→GGG) | ybiO ← | mechanosensitive channel protein, intermediate conductance |
| RA | 855,390 | T→G | 13.6% | T119P (ACC→CCC) | ldtB ← | L,D‑transpeptidase linking Lpp to murein |
| RA | 861,215 | G→C | 12.3% | R464R (CGC→CGG) | ybiW ← | putative pyruvate formate lyase |
| RA | 910,397 | T→C | 14.3% | E218G (GAG→GGG) | poxB ← | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding |
| RA | 910,811 | T→G | 23.6% | H80P (CAC→CCC) | poxB ← | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding |
| RA | 921,692 | T→G | 14.1% | V449G (GTG→GGG) | macB → | macrolide ABC transporter peremase/ATPase |
| RA | 954,388 | C→T | 28.8% | A27T (GCA→ACA) | focA ← | formate channel |
| RA | 964,532 | A→G | 6.9% | G71G (GGA→GGG) | ycaI → | ComEC family inner membrane protein |
| RA | 973,698 | A→G | 15.4% | G54G (GGA→GGG) | smtA → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| RA | 974,068 | C→A | 11.2% | R178R (CGG→AGG) | smtA → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| RA | 983,035 | T→G | 16.2% | intergenic (+141/‑40) | ldtD → / → ycbK | murein L,D‑transpeptidase/M15A protease‑related family periplasmic protein |
| RA | 1,014,019 | A→G | 14.1% | E254G (GAA→GGA) | pqiB → | paraquat‑inducible, SoxRS‑regulated MCE domain protein |
| RA | 1,030,269 | C→T | 14.9% | S69F (TCT→TTT) | yccX → | weak acylphosphatase |
| RA | 1,058,486 | T→C | 18.4% | S135P (TCG→CCG) | torC → | trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit |
| RA | 1,078,659 | T→G | 17.4% | H75P (CAC→CCC) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,123,412 | T→A | 13.4% | I215F (ATT→TTT) | grxB ← | glutaredoxin 2 (Grx2) |
| RA | 1,136,671 | T→G | 11.5% | V133G (GTG→GGG) | flgI → | putative flagellar basal body protein |
| RA | 1,196,305 | C→T | 65.1% | R395C (CGT→TGT) | icd → | isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase |
| RA | 1,213,890 | A→T | 12.3% | I57K (ATA→AAA) | bluR ← | repressor of blue light‑responsive genes |
| RA | 1,239,855 | A→G | 18.0% | E326G (GAG→GGG) | dadX → | alanine racemase, catabolic, PLP‑binding |
| RA | 1,241,337 | A→C | 23.6% | G245G (GGT→GGG) | cvrA ← | putative cation/proton antiporter |
| RA | 1,251,973 | T→C | 14.6% | L303P (CTC→CCC) | dhaR → | dhaKLM operon transcription activator |
| RA | 1,325,991 | A→G | 12.4% | S416G (AGT→GGT) | yciQ → | enhancer of membrane protein expression, putative inner membrane protein |
| RA | 1,340,405 | A→T | 15.5% | I55F (ATC→TTC) | yciS → | DUF1049 family inner membrane protein, function unknown |
| RA | 1,340,417 | A→G | 16.5% | I59V (ATT→GTT) | yciS → | DUF1049 family inner membrane protein, function unknown |
| RA | 1,365,542 | T→G | 10.7% | intergenic (+30/‑8) | puuB → / → puuE | gamma‑glutamylputrescine oxidoreductase/4‑aminobutyrate aminotransferase, PLP‑dependent |
| RA | 1,366,268 | T→G | 13.4% | V240G (GTG→GGG) | puuE → | 4‑aminobutyrate aminotransferase, PLP‑dependent |
| RA | 1,411,020 | A→C | 11.4% | V310G (GTG→GGG) | ttcA ← | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,425,588 | C→T | 13.5% | S71F (TCT→TTT) | ynaK → | Rac prophage, conserved protein |
| RA | 1,431,467 | A→C | 11.5% | T807P (ACT→CCT) | stfR → | Rac prophage, putative tail fiber protein |
| RA | 1,435,704 | G→A | 13.2% | intergenic (‑85/+56) | uspF ← / ← ompN | stress‑induced protein, ATP‑binding protein/outer membrane pore protein N, non‑specific |
| RA | 1,435,707 | C→A | 16.5% | intergenic (‑88/+53) | uspF ← / ← ompN | stress‑induced protein, ATP‑binding protein/outer membrane pore protein N, non‑specific |
| RA | 1,445,981 | T→G | 24.1% | G34G (GGT→GGG) | ydbL → | DUF1318 family protein |
| RA | 1,455,846 | A→C | 13.4% | H228P (CAC→CCC) | paaC → | ring 1,2‑phenylacetyl‑CoA epoxidase subunit |
| RA | 1,467,068 | T→G | 16.4% | pseudogene (1677/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,525,749 | G→A | 12.3% | L78L (CTG→TTG) | ansP ← | L‑asparagine transporter |
| RA | 1,531,410 | C→A | 7.9% | pseudogene (86/315 nt) | yncI → | pseudogene |
| RA | 1,537,275 | T→C | 11.8% | E12G (GAG→GGG) | narW ← | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) |
| RA | 1,543,530 | A→C | 14.1% | S177R (AGT→AGG) | narU ← | nitrate/nitrite transporter |
| RA | 1,614,336 | T→C | 14.3% | E123G (GAG→GGG) | sad ← | succinate semialdehyde dehydrogenase, NAD(P)+‑dependent |
| RA | 1,668,252 | T→C | 10.2% | S105G (AGC→GGC) | mlc ← | glucosamine anaerobic growth regulon transcriptional repressor, autorepressor |
| RA | 1,706,790 | C→A | 10.7% | T148K (ACG→AAG) | rsxB → | SoxR iron‑sulfur cluster reduction factor component, putative iron‑sulfur protein |
| RA | 1,708,758 | G→C | 24.8% | E614Q (GAA→CAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,710,100 | A→T | 8.5% | Y320F (TAT→TTT) | rsxD → | SoxR iron‑sulfur cluster reduction factor component, putative membrane protein of electron transport complex |
| RA | 1,762,247 | T→C | 7.6% | E89G (GAG→GGG) | sufC ← | SufBCD Fe‑S cluster assembly scaffold protein, ATP‑binding protein |
| RA | 1,810,544 | A→G | 15.7% | S112G (AGC→GGC) | ydjM → | inner membrane protein regulated by LexA |
| RA | 1,810,548 | A→C | 15.1% | H113P (CAC→CCC) | ydjM → | inner membrane protein regulated by LexA |
| RA | 1,823,068 | A→C | 11.6% | H204P (CAC→CCC) | nadE → | NAD synthetase, NH3/glutamine‑dependent |
| RA | 1,825,130 | G→T | 20.9% | intergenic (‑193/+10) | ves ← / ← spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| RA | 1,825,164 | A→T | 11.7% | G154G (GGT→GGA) | spy ← | periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| RA | 1,825,217 | G→T | 10.6% | Q137K (CAA→AAA) | spy ← | periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| RA | 1,825,257 | C→T | 10.7% | Q123Q (CAG→CAA) | spy ← | periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| RA | 1,842,798 | T→G | 17.1% | V143G (GTG→GGG) | gdhA → | glutamate dehydrogenase, NADP‑specific |
| RA | 1,860,040 | A→G | 8.3% | S64P (TCA→CCA) | ydjK ← | putative MFS sugar transporter, membrane protein |
| RA | 1,861,244 | A→C | 11.7% | V30G (GTG→GGG) | ydjL ← | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 1,879,458 | A→C | 16.7% | V43G (GTG→GGG) | yoaG ← | uncharacterized protein |
| RA | 1,879,473 | A→C | 22.3% | V38G (GTG→GGG) | yoaG ← | uncharacterized protein |
| RA | 1,923,379 | C→T | 16.3% | E110K (GAA→AAA) | yebY ← | DUF2511 family protein |
| RA | 1,955,112 | G→T | 10.7% | G632G (GGC→GGA) | torZ ← | trimethylamine N‑oxide reductase system III, catalytic subunit |
| RA | 1,961,224 | T→G | 10.9% | V388G (GTG→GGG) | argS → | arginyl‑tRNA synthetase |
| RA | 2,008,412 | A→T | 14.6% | T46S (ACC→TCC) | yedE → | UPF0394 family sulphur transport domain‑containing inner membrane protein |
| RA | 2,041,503 | T→G | 11.6% | G43G (GGT→GGG) | zinT → | zinc and cadmium binding protein, periplasmic |
| RA | 2,047,043 | T→A | 11.0% | Y702* (TAT→TAA) | yeeJ → | putative adhesin |
| RA | 2,097,266 | C→A | 12.4% | intergenic (+41/+55) | hisI → / ← wzzB | phosphoribosyl‑AMP cyclohydrolase and phosphoribosyl‑ATP pyrophosphatase/regulator of length of O‑antigen component of lipopolysaccharide chains |
| RA | 2,098,141 | T→C | 14.0% | E54G (GAG→GGG) | wzzB ← | regulator of length of O‑antigen component of lipopolysaccharide chains |
| RA | 2,126,490 | T→C | 15.2% | E234G (GAG→GGG) | wcaG ← | bifunctional GDP‑fucose synthetase: GDP‑4‑dehydro‑6‑deoxy‑D‑mannose epimerase/ GDP‑4‑dehydro‑6‑L‑deoxygalactose reductase |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,178,923 | T→G | 12.7% | S35R (AGT→AGG) | yegT → | nucleoside transporter, low affinity |
| RA | 2,193,508 | A→C | 9.5% | V220G (GTG→GGG) | mrp ← | antiporter inner membrane protein |
| RA | 2,195,707 | C→G | 7.3% | R470R (CGC→CGG) | metG → | methionyl‑tRNA synthetase |
| RA | 2,223,433 | C→G | 11.0% | G417G (GGC→GGG) | dld → | D‑lactate dehydrogenase, FAD‑binding, NADH independent |
| RA | 2,274,347 | T→G | 20.7% | G57G (GGT→GGG) | yejB → | microcin C ABC transporter permease |
| RA | 2,282,165 | A→C | 13.3% | T512T (ACA→ACC) | yejH → | putative ATP‑dependent DNA or RNA helicase |
| RA | 2,285,460 | T→C | 10.5% | S363P (TCG→CCG) | yejM → | essential inner membrane DUF3413 domain‑containing protein, lipid A production and membrane permeability factor |
| RA | 2,303,241 | A→G | 14.8% | S85S (TCT→TCC) | napF ← | ferredoxin‑type protein, role in electron transfer to periplasmic nitrate reductase NapA |
| RA | 2,304,535 | A→G | 17.6% | intergenic (+144/+571) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,321,374 | T→C | 7.6% | L445P (CTC→CCC) | atoS → | sensory histidine kinase in two‑component regulatory system with AtoC |
| RA | 2,354,498 | T→C | 14.6% | L79P (CTC→CCC) | glpB → | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase membrane anchor subunit |
| RA | 2,398,638 | A→C | 12.7% | V509G (GTG→GGG) | nuoG ← | NADH:ubiquinone oxidoreductase, chain G |
| RA | 2,503,023 | C→A | 11.2% | L487F (TTG→TTT) | fryA ← | putative PTS enzyme: Hpr, enzyme I and IIA components |
| RA | 2,508,134 | A→C | 13.7% | V36G (GTG→GGG) | fryB ← | putative enzyme IIB component of PTS |
| RA | 2,508,140 | T→A | 12.4% | Y34F (TAT→TTT) | fryB ← | putative enzyme IIB component of PTS |
| RA | 2,517,482 | T→G | 9.6% | T117P (ACC→CCC) | yfeA ← | putative diguanylate cyclase |
| RA | 2,527,395 | T→G | 16.1% | V151G (GTG→GGG) | yfeH → | putative inorganic ion transporter |
| RA | 2,527,428 | A→G | 11.6% | E162G (GAG→GGG) | yfeH → | putative inorganic ion transporter |
| RA | 2,581,060 | A→G | 13.3% | E476G (GAG→GGG) | tktB → | transketolase 2, thiamine triphosphate‑binding |
| RA | 2,583,191 | A→C | 8.7% | C96G (TGT→GGT) | nudK ← | GDP‑mannose pyrophosphatase |
| RA | 2,598,974 | A→C | 7.8% | V262G (GTG→GGG) | dapA ← | dihydrodipicolinate synthase |
| RA | 2,608,251 | C→G | 26.4% | A446G (GCG→GGG) | hyfF → | hydrogenase 4, membrane subunit |
| RA | 2,610,860 | G→T | 14.1% | A53S (GCT→TCT) | hyfI → | hydrogenase 4, Fe‑S subunit |
| RA | 2,616,668 | A→G | 17.4% | M193V (ATG→GTG) | bepA → | OM protein maintenance and assembly metalloprotease and chaperone, periplasmic |
| RA | 2,648,545 | A→C | 11.6% | G1247G (GGT→GGG) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM, anti‑host protease defense factor, periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,659,473 | T→C | 9.9% | intergenic (‑8/+88) | hscB ← / ← iscA | HscA co‑chaperone, J domain‑containing protein Hsc56, IscU‑specific chaperone HscAB/FeS cluster assembly protein |
| RA | 2,691,099 | T→G | 8.9% | intergenic (‑3/+56) | glrK ← / ← glmY | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR/sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,714,231 | T→C | 10.0% | intergenic (+3/+206) | srmB → / ← yfiE | ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator |
| RA | 2,718,842 | T→G | 9.0% | V37G (GTG→GGG) | trxC → | thioredoxin 2 |
| RA | 2,739,682 | T→C | 10.7% | E129G (GAG→GGG) | tyrA ← | fused chorismate mutase T/prephenate dehydrogenase |
| RA | 2,739,724 | T→C | 12.6% | E115G (GAG→GGG) | tyrA ← | fused chorismate mutase T/prephenate dehydrogenase |
| RA | 2,777,457 | A→C | 9.7% | T3P (ACT→CCT) | ypjF → | CP4‑57 prophage, toxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,778,038 | T→C | 12.5% | intergenic (+258/+106) | ypjF → / ← ypjA | CP4‑57 prophage, toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,788,621 | G→A | 33.8% | pseudogene (2227/2253 nt) | ygaQ → | uncharacterized protein, putative enzyme |
| RA | 2,793,673 | T→G | 15.0% | V314G (GTG→GGG) | gabT → | 4‑aminobutyrate aminotransferase, PLP‑dependent |
| RA | 2,794,875 | A→G | 8.3% | I209V (ATC→GTC) | gabP → | gamma‑aminobutyrate transporter |
| RA | 2,820,041 | T→C | 16.4% | S657G (AGC→GGC) | alaS ← | alanyl‑tRNA synthetase |
| RA | 2,828,504 | T→G | 23.1% | V257G (GTG→GGG) | srlD → | sorbitol‑6‑phosphate dehydrogenase |
| RA | 2,831,287 | T→C | 15.2% | E334G (GAG→GGG) | norR ← | anaerobic nitric oxide reductase DNA‑binding transcriptional activator |
| RA | 2,853,014 | A→C | 10.1% | H294P (CAC→CCC) | hypD → | hydrogenase maturation protein |
| RA | 2,877,673 | A→G | 12.6% | intergenic (+57/+894) | iap → / ← ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| RA | 2,880,917 | G→A | 6.2% | L44F (CTT→TTT) | casD ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| RA | 2,882,354 | A→C | 8.3% | S94R (AGT→AGG) | casB ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| RA | 2,882,451 | A→C | 9.5% | V62G (GTG→GGG) | casB ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| RA | 2,901,791 | T→G | 8.6% | V401G (GTG→GGG) | yqcE → | putative MFS transporter, inner membrane protein |
| RA | 2,931,318 | A→G | 11.1% | E89G (GAG→GGG) | ygdG → | Ssb‑binding protein, misidentified as ExoIX |
| RA | 2,936,841 | T→C | 10.2% | S420S (TCT→TCC) | fucI → | L‑fucose isomerase |
| RA | 2,975,091 | T→G | 20.1% | T308P (ACT→CCT) | aas ← | fused 2‑acylglycerophospho‑ethanolamine acyl transferase/acyl‑acyl carrier protein synthetase |
| RA | 2,978,164 | T→A | 23.4% | Y245F (TAT→TTT) | lysA ← | diaminopimelate decarboxylase, PLP‑binding |
| RA | 2,978,474 | G→C | 13.0% | R142G (CGC→GGC) | lysA ← | diaminopimelate decarboxylase, PLP‑binding |
| RA | 2,999,608 | A→T | 13.8% | R94R (CGT→CGA) | ygeR ← | LysM domain‑containing M23 family putative peptidase, septation lipoprotein |
| RA | 3,027,729 | A→G | 15.5% | E204G (GAG→GGG) | ghxQ → | guanine/hypoxanthine permease, high affinity, guanine/hypoxanthine:H+ symporter |
| RA | 3,076,757 | T→C | 11.4% | E233G (GAG→GGG) | yggP ← | putative Zn‑binding dehydrogenase |
| RA | 3,135,439 | T→G | 12.0% | T311P (ACC→CCC) | pitB ← | phosphate transporter |
| RA | 3,138,166 | T→A | 11.0% | I119F (ATC→TTC) | gss ← | glutathionylspermidine amidase and glutathionylspermidine synthetase |
| RA | 3,141,100 | T→C | 12.1% | D62G (GAT→GGT) | hybD ← | maturation protease for hydrogenase 2 |
| RA | 3,141,135 | G→C | 14.4% | G50G (GGC→GGG) | hybD ← | maturation protease for hydrogenase 2 |
| RA | 3,148,283 | A→G | 13.6% | E130G (GAG→GGG) | gpr → | L‑glyceraldehyde 3‑phosphate reductase |
| RA | 3,160,889 | T→C | 10.9% | S86G (AGC→GGC) | ygiQ ← | Radical SAM superfamily protein |
| RA | 3,162,370 | A→G | 9.4% | S100P (TCA→CCA) | ftsP ← | septal ring component that protects the divisome from stress, multicopy suppressor of ftsI(Ts) |
| RA | 3,175,798 | T→G | 20.5% | S69S (TCA→TCC) | yqiA ← | acyl CoA esterase |
| RA | 3,184,574 | T→C | 14.6% | intergenic (‑110/‑264) | ribB ← / → yqiC | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/BMFP family putative fusogenic protein |
| RA | 3,196,759 | T→C | 9.2% | intergenic (‑8/+40) | hldE ← / ← glnE | heptose 7‑phosphate kinase and heptose 1‑phosphate adenyltransferase/fused deadenylyltransferase/adenylyltransferase for glutamine synthetase |
| RA | 3,206,436 | G→A | 23.0% | intergenic (‑182/‑25) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| RA | 3,209,972 | A→C | 13.2% | G190G (GGT→GGG) | tsaD ← | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein, glycation binding protein |
| RA | 3,220,856 | T→G | 14.6% | S455R (AGT→AGG) | patA → | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| RA | 3,275,602 | T→C | 18.1% | V108A (GTC→GCC) | garD → | D‑galactarate dehydrogenase |
| RA | 3,275,634 | A→C | 18.6% | T119P (ACC→CCC) | garD → | D‑galactarate dehydrogenase |
| RA | 3,277,424 | G→A | 10.5% | E30E (GAG→GAA) | yhaV → | toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,279,417 | A→G | 11.9% | E169G (GAG→GGG) | kbaZ → | tagatose 6‑phosphate aldolase 1, kbaZ subunit |
| RA | 3,293,765 | C→G | 11.5% | A123G (GCG→GGG) | lpoA → | OM lipoprotein stimulator of MrcA transpeptidase |
| RA | 3,300,862 | T→C | 14.3% | E138G (GAG→GGG) | yhbT ← | SCP‑2 sterol transfer family protein |
| RA | 3,315,738 | A→C | 7.6% | V92G (GTG→GGG) | infB ← | translation initiation factor IF‑2 |
| RA | 3,338,867 | T→C | 12.5% | E127G (GAG→GGG) | mlaE ← | ABC transporter maintaining OM lipid asymmetry, inner membrane permease protein |
| RA | 3,373,348 | A→G | 11.6% | L76P (CTC→CCC) | nanA ← | N‑acetylneuraminate lyase |
| RA | 3,390,223 | A→G | 12.2% | I236V (ATC→GTC) | aaeR → | transcriptional regulator for aaeXAB operon |
| RA | 3,398,906 | A→G | 16.0% | A357A (GCT→GCC) | mreC ← | cell wall structural complex MreBCD transmembrane component MreC |
| RA | 3,416,440 | C→T | 9.0% | F470F (TTC→TTT) | acrF → | multidrug efflux system protein |
| RA | 3,437,052 | A→C | 12.7% | P179P (CCA→CCC) | trkA → | NAD‑binding component of TrK potassium transporter |
| RA | 3,458,671 | T→A | 10.1% | I112N (ATC→AAC) | gspE → | general secretory pathway component, cryptic |
| RA | 3,467,552 | A→C | 11.4% | V767G (GTG→GGG) | chiA ← | periplasmic endochitinase |
| RA | 3,480,841 | G→C | 12.7% | R107G (CGT→GGT) | kefG ← | potassium‑efflux system ancillary protein for KefB, glutathione‑regulated |
| RA | 3,487,700 | A→C | 13.7% | A304A (GCA→GCC) | yhfK → | putative transporter, FUSC superfamily inner membrane protein |
| RA | 3,499,594 | G→T | 19.1% | C50F (TGC→TTC) | yhfL → | small lipoprotein |
| RA | 3,499,607 | A→C | 27.5% | A54A (GCA→GCC) | yhfL → | small lipoprotein |
| RA | 3,507,166 | T→C | 9.6% | S57G (AGC→GGC) | yhfT ← | inner membrane protein |
| RA | 3,509,356 | A→T | 13.6% | Y152* (TAT→TAA) | yhfW ← | phosphopentomutase‑related metalloenzyme superfamily protein |
| RA | 3,509,359 | G→A | 21.8% | V151V (GTC→GTT) | yhfW ← | phosphopentomutase‑related metalloenzyme superfamily protein |
| RA | 3,511,158 | A→C | 10.7% | V88G (GTG→GGG) | yhfY ← | PRD domain protein |
| RA | 3,532,533 | G→A | 11.3% | intergenic (‑96/‑283) | yhgE ← / → pck | DUF4153 family putative inner membrane protein/phosphoenolpyruvate carboxykinase [ATP] |
| RA | 3,532,553 | G→A | 11.0% | intergenic (‑116/‑263) | yhgE ← / → pck | DUF4153 family putative inner membrane protein/phosphoenolpyruvate carboxykinase [ATP] |
| RA | 3,534,878 | A→C | 12.3% | V330G (GTG→GGG) | envZ ← | sensory histidine kinase in two‑component regulatory system with OmpR |
| RA | 3,551,915 | A→C | 15.7% | V186G (GTG→GGG) | malP ← | maltodextrin phosphorylase |
| RA | 3,553,283 | T→G | 14.3% | G67G (GGT→GGG) | malT → | mal regulon transcriptional activator |
| RA | 3,555,917 | T→C | 9.3% | T311A (ACC→GCC) | rtcA ← | RNA 3'‑terminal phosphate cyclase |
| RA | 3,563,345 | A→G | 12.8% | E445G (GAG→GGG) | glpD → | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| RA | 3,627,505 | T→G | 11.5% | H678P (CAC→CCC) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| RA | 3,638,227 | A→G | 18.2% | E196G (GAG→GGG) | pitA → | phosphate transporter, low‑affinity, tellurite importer |
| RA | 3,689,746 | T→C | 13.0% | E172G (GAG→GGG) | bcsZ ← | endo‑1,4‑D‑glucanase |
| RA | 3,697,739 | T→G | 18.1% | V428G (GTG→GGG) | bcsE → | cellulose production protein |
| RA | 3,731,688 | C→A | 11.0% | Q187K (CAA→AAA) | xylF → | D‑xylose transporter subunit |
| RA | 3,741,499 | T→C | 7.2% | E28G (GAG→GGG) | ysaA ← | putative hydrogenase, 4Fe‑4S ferredoxin‑type component |
| RA | 3,760,779 | A→C | 12.8% | V157G (GTG→GGG) | selA ← | selenocysteine synthase |
| RA | 3,767,251 | T→C | 9.7% | pseudogene (32/945 nt) | rhsJ → | Rhs‑family protein |
| RA | 3,784,899 | A→C | 15.9% | V39G (GTG→GGG) | yibN ← | putative rhodanese‑related sulfurtransferase |
| MC JC | 3,815,858 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,817,476 | T→C | 11.1% | S268P (TCC→CCC) | yicC → | UPF0701 family protein |
| RA | 3,820,371 | A→C | 8.4% | W267G (TGG→GGG) | ligB ← | DNA ligase, NAD(+)‑dependent |
| RA | 3,833,714 | T→G | 11.9% | T275P (ACT→CCT) | yicI ← | putative alpha‑glucosidase |
| RA | 3,838,897 | G→T | 10.3% | L217F (TTG→TTT) | yicL → | EamA family inner membrane putative transporter |
| RA | 3,840,797 | G→A | 13.1% | I314I (ATC→ATT) | nepI ← | putative transporter |
| RA | 3,842,367 | A→C | 15.5% | V12G (GTG→GGG) | yicN ← | DUF1198 family protein |
| RA | 3,842,745 | T→G | 15.3% | S348S (TCA→TCC) | adeQ ← | adenine permease, high affinity, adenine:H+ symporter |
| RA | 3,867,486 | G→A | 8.2% | intergenic (‑65/‑241) | ibpA ← / → yidQ | heat shock chaperone/DUF1375 family outer membrane protein |
| RA | 3,893,634 | A→C | 10.4% | T291P (ACC→CCC) | yidZ → | putative DNA‑binding transcriptional regulator |
| RA | 3,895,109 | G→A | 9.8% | Q153Q (CAG→CAA) | chrR → | chromate reductase, Class I, flavoprotein |
| RA | 3,895,555 | T→C | 12.7% | M352V (ATG→GTG) | adeP ← | adenine permease, high affinity, adenine:H+ symporter |
| RA | 3,932,229 | C→T | 11.0% | I305I (ATC→ATT) | kup → | potassium transporter |
| RA | 3,932,685 | T→C | 9.8% | S457S (TCT→TCC) | kup → | potassium transporter |
| RA | 3,932,711 | A→G | 11.7% | E466G (GAG→GGG) | kup → | potassium transporter |
| RA | 3,949,064 | T→C | 14.8% | E302G (GAG→GGG) | yifB ← | magnesium chelatase family protein and putative transcriptional regulator |
| RA | 3,976,385 | C→G | 16.0% | L37V (CTT→GTT) | wzxE → | O‑antigen translocase |
| RA | 3,981,334 | A→G | 14.6% | E150G (GAG→GGG) | yifK → | putative APC family amino acid transporter |
| MC JC | 4,001,644 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,005,348 | A→C | 20.7% | D163A (GAC→GCC) | pldA → | outer membrane phospholipase A |
| RA | 4,011,489 | A→G | 10.7% | T139A (ACT→GCT) | yigM → | putative inner membrane EamA‑like transporter |
| RA | 4,011,697 | T→G | 11.3% | V208G (GTG→GGG) | yigM → | putative inner membrane EamA‑like transporter |
| RA | 4,016,069 | A→G | 13.7% | S34P (TCT→CCT) | ysgA ← | putative carboxymethylenebutenolidase |
| RA | 4,022,322 | A→G | 16.2% | I36V (ATT→GTT) | tatB → | TatABCE protein translocation system subunit |
| RA | 4,022,862 | A→C | 9.3% | H43P (CAC→CCC) | tatC → | TatABCE protein translocation system subunit |
| RA | 4,065,570 | T→A | 13.6% | T66S (ACC→TCC) | yihO ← | putative sulphoquinovose importer |
| RA | 4,065,579 | T→A | 18.6% | T63S (ACC→TCC) | yihO ← | putative sulphoquinovose importer |
| RA | 4,065,603 | T→A | 14.2% | I55F (ATC→TTC) | yihO ← | putative sulphoquinovose importer |
| RA | 4,073,923 | T→G | 15.4% | G62G (GGT→GGG) | yihV → | 6‑deoxy‑6‑sulphofructose kinase |
| RA | 4,101,254 | C→T | 12.3% | S149F (TCT→TTT) | sodA → | superoxide dismutase, Mn |
| RA | 4,103,606 | T→C | 15.8% | S457G (AGT→GGT) | cpxA ← | sensory histidine kinase in two‑component regulatory system with CpxR |
| RA | 4,107,661 | T→G | 16.2% | G37G (GGT→GGG) | pfkA → | 6‑phosphofructokinase I |
| RA | 4,140,197 | T→G | 11.5% | H675P (CAC→CCC) | frwA ← | putative PTS enzyme: Hpr, enzyme I and II components |
| RA | 4,141,475 | A→G | 10.0% | L249P (CTC→CCC) | frwA ← | putative PTS enzyme: Hpr, enzyme I and II components |
| RA | 4,149,656 | A→T | 5.9% | Y203* (TAT→TAA) | eptC ← | LPS heptose I phosphoethanolamine transferase |
| RA | 4,156,549 | T→C | 13.6% | S180P (TCC→CCC) | argB → | acetylglutamate kinase |
| RA | 4,158,652 | T→G | 14.7% | V55G (GTG→GGG) | oxyR → | oxidative and nitrosative stress transcriptional regulator |
| RA | 4,159,200 | A→C | 11.6% | T238P (ACT→CCT) | oxyR → | oxidative and nitrosative stress transcriptional regulator |
| RA | 4,160,853 | C→T | 43.0% | intergenic (‑64/‑270) | sthA ← / → fabR | pyridine nucleotide transhydrogenase, soluble/transcriptional repressor of fabA and fabB |
| RA | 4,184,542 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,195,534 | T→C | 8.4% | S189G (AGC→GGC) | thiC ← | phosphomethylpyrimidine synthase |
| RA | 4,241,718 | T→A | 8.9% | Y179F (TAC→TTC) | xylE ← | D‑xylose transporter |
| RA | 4,241,800 | C→A | 11.8% | A152S (GCG→TCG) | xylE ← | D‑xylose transporter |
| RA | 4,241,837 | G→C | 8.8% | G139G (GGC→GGG) | xylE ← | D‑xylose transporter |
| RA | 4,269,715 | C→T | 11.3% | F101F (TTC→TTT) | aphA → | acid phosphatase/phosphotransferase, class B, non‑specific |
| RA | 4,274,856 | G→T | 13.9% | T62K (ACA→AAA) | yjcB ← | putative inner membrane protein |
| RA | 4,277,559 | A→T | 13.1% | Y31F (TAT→TTT) | soxR → | redox‑sensitive transcriptional activator of soxS, autorepressor |
| RA | 4,295,699 | T→G | 25.1% | V407G (GTG→GGG) | gltP → | glutamate/aspartate:proton symporter |
| RA | 4,295,759 | T→G | 10.9% | V427G (GTG→GGG) | gltP → | glutamate/aspartate:proton symporter |
| RA | 4,319,405 | A→C | 20.1% | V68G (GTG→GGG) | phnJ ← | carbon‑phosphorus lyase, SAM‑dependent |
| RA | 4,322,973 | A→G | 12.7% | pseudogene (259/426 nt) | phnE ← | defective phosphonate ABC transporter permease,transport, Transport of small molecules: Anions, membrane channel protein component of Pn transporter, membrane component of ABC superfamily |
| RA | 4,327,764 | A→G | 6.8% | E210G (GAG→GGG) | crfC → | clamp‑binding sister replication fork colocalization protein, dynamin‑related |
| RA | 4,342,221 | C→G | 10.1% | R104G (CGG→GGG) | melA → | alpha‑galactosidase, NAD(P)‑binding |
| RA | 4,353,195 | T→G | 11.8% | intergenic (+113/+6) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair, membrane‑lytic protein, stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,361,543 | A→T | 11.6% | D131E (GAT→GAA) | cadC ← | cadBA operon transcriptional activator |
| RA | 4,366,216 | T→G | 13.1% | T187P (ACT→CCT) | dcuA ← | C4‑dicarboxylate antiporter |
| RA | 4,382,745 | A→G | 14.5% | G34G (GGA→GGG) | epmA → | Elongation Factor P Lys34 lysyltransferase |
| RA | 4,399,653 | A→G | 10.3% | E134G (GAG→GGG) | miaA → | delta(2)‑isopentenylpyrophosphate tRNA‑adenosine transferase |
| RA | 4,410,855 | A→G | 7.3% | E101G (GAG→GGG) | yjfJ → | PspA/IM30 family protein |
| RA | 4,437,249 | A→G | 14.9% | E165G (GAG→GGG) | cysQ → | 3'(2'),5'‑bisphosphate nucleotidase |
| RA | 4,440,953 | G→A | 9.4% | F88F (TTC→TTT) | ytfL ← | UPF0053 family inner membrane protein |
| RA | 4,443,935 | T→G | 12.1% | V518G (GTG→GGG) | tamA → | translocation and assembly module for autotransporter export, outer membrane subunit |
| RA | 4,444,675 | T→G | 14.9% | V188G (GTG→GGG) | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
| RA | 4,444,735 | T→C | 9.5% | L208P (CTC→CCC) | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
| RA | 4,445,419 | T→C | 9.3% | L436P (CTC→CCC) | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
| RA | 4,449,046 | T→G | 21.1% | intergenic (+3/+77) | chpB → / ← ppa | toxin of the ChpB‑ChpS toxin‑antitoxin system/inorganic pyrophosphatase |
| RA | 4,452,853 | A→G | 32.8% | G94G (GGA→GGG) | ytfT → | putative sugar ABC transporter permease |
| RA | 4,455,979 | T→G | 10.9% | V65G (GTG→GGG) | mpl → | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| RA | 4,458,425 | A→C | 20.9% | T156P (ACC→CCC) | pmbA → | putative antibiotic peptide MccB17 maturation peptidase |
| RA | 4,463,875 | T→G | 11.4% | H279P (CAC→CCC) | treC ← | trehalose‑6‑P hydrolase |
| RA | 4,474,714 | A→G | 16.3% | E197G (GAG→GGG) | bdcR → | transcriptional repressor for divergent bdcA |
| RA | 4,481,717 | T→G | 16.3% | T708P (ACC→CCC) | valS ← | valyl‑tRNA synthetase |
| RA | 4,481,800 | T→C | 14.5% | E680G (GAG→GGG) | valS ← | valyl‑tRNA synthetase |
| RA | 4,485,027 | T→C | 13.3% | E309G (GAG→GGG) | pepA ← | multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site‑specific recombination factor |
| RA | 4,510,765 | T→C | 9.5% | R232G (AGA→GGA) | fecE ← | ferric citrate ABC transporter ATPase |
| RA | 4,522,898 | A→G | 11.8% | S400P (TCC→CCC) | yjhG ← | putative dehydratase |
| RA | 4,542,118 | A→G | 12.8% | R27R (AGA→AGG) | fimE → | tyrosine recombinase/inversion of on/off regulator of fimA |
| RA | 4,549,431 | G→T | 11.4% | C208F (TGT→TTT) | fimH → | minor component of type 1 fimbriae |
| RA | 4,576,033 | T→C | 7.7% | pseudogene (2114/2937 nt) | yjiV → | pseudogene, conserved hypothetical protein |
| RA | 4,606,903 | A→G | 21.6% | S267P (TCC→CCC) | rsmC ← | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| RA | 4,609,768 | T→G | 14.5% | G118G (GGT→GGG) | prfC → | peptide chain release factor RF‑3 |
| RA | 4,617,437 | T→C | 14.0% | T38T (ACT→ACC) | deoC → | 2‑deoxyribose‑5‑phosphate aldolase, NAD(P)‑linked |
| RA | 4,626,669 | A→C | 13.6% | T253P (ACC→CCC) | radA → | DNA repair protein |
| RA | 4,631,506 | A→G | 12.2% | E258G (GAG→GGG) | slt → | lytic murein transglycosylase, soluble |
| RA | 4,633,068 | T→G | 11.1% | V103G (GTG→GGG) | trpR → | transcriptional repressor, tryptophan‑binding |
| RA | 4,637,649 | A→G | 11.8% | E318G (GAG→GGG) | creC → | sensory histidine kinase in two‑component regulatory system with CreB or PhoB |
| RA | 4,638,874 | A→T | 10.9% | L232F (TTA→TTT) | creD → | inner membrane protein |
| RA | 4,638,877 | T→G | 11.0% | G233G (GGT→GGG) | creD → | inner membrane protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 954482 | 954815 | 334 | 37 [35] | [35] 37 | focA/ycaO | formate channel/ribosomal protein S12 methylthiotransferase accessory factor |
| * | * | ÷ | NC_000913 | 2470078 | 2470505 | 428 | 38 [32] | [33] 40 | [gtrS] | [gtrS] |
| * | * | ÷ | NC_000913 | 4233744 | 4235490 | 1747 | 40 [36] | [35] 37 | pgi | pgi |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 257908 = | NA (NA) | 155 (1.360) | 87/426 | NT | 98.7% | intergenic (+9/‑768) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | = 1293039 | 2 (0.020) | intergenic (‑117/‑488) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | 458787 = | 65 (0.570) | 108 (0.960) | 72/420 | NT | 62.8% | intergenic (+87/‑101) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | 608011 = | NA (NA) | intergenic (+23/‑54) | hokE/insL1 | toxic polypeptide, small/IS186 transposase | |||||
| * | ? | NC_000913 | = 458799 | 55 (0.480) | 73 (0.650) | 53/418 | NT | 57.5% | intergenic (+99/‑89) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | = 609347 | NA (NA) | intergenic (+170/+112) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_000913 | 1207790 = | 23 (0.200) | 95 (0.900) | 60/394 | NT | 83.6% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 16 (0.150) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 24 (0.210) | 115 (1.090) | 62/394 | NT | 85.8% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 16 (0.150) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1293032 = | 2 (0.020) | 111 (0.970) | 68/426 | NT | 98.2% | intergenic (‑110/‑495) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 23 (0.210) | 20/418 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 44 (0.400) | 38/410 | NT | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 40 (0.350) | 25/426 | NT | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 97 (0.850) | 67/426 | NT | 100% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | 2514275 = | NA (NA) | 27 (0.240) | 23/420 | NT | 19.1% | intergenic (+33/‑54) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase |
| ? | NC_000913 | = 2536318 | 116 (1.020) | coding (487/510 nt) | crr | glucose‑specific enzyme IIA component of PTS | |||||
| * | ? | NC_000913 | = 2515612 | NA (NA) | 44 (0.390) | 32/422 | NT | 27.9% | intergenic (+171/+29) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase |
| ? | NC_000913 | 2536308 = | 115 (1.010) | coding (477/510 nt) | crr | glucose‑specific enzyme IIA component of PTS | |||||
| * | ? | NC_000913 | = 4110715 | NA (NA) | 3 (0.030) | 3/408 | NT | NA | noncoding (7/19 nt) | REP303 (repetitive extragenic palindromic) element, contains 1 REP sequences | REP303 (repetitive extragenic palindromic) element, contains 1 REP sequences |
| ? | NC_000913 | = 4110720 | NA (NA) | noncoding (12/19 nt) | REP303 (repetitive extragenic palindromic) element, contains 1 REP sequences | REP303 (repetitive extragenic palindromic) element, contains 1 REP sequences | |||||
| * | ? | NC_000913 | 4618140 = | NA (NA) | 4 (0.040) | 4/410 | NT | 3.8% | noncoding (23/82 nt) | REP353 (repetitive extragenic palindromic) element, contains 2 REP sequences | REP353 (repetitive extragenic palindromic) element, contains 2 REP sequences |
| ? | NC_000913 | 4618169 = | 101 (0.920) | noncoding (52/82 nt) | REP353 (repetitive extragenic palindromic) element, contains 2 REP sequences | REP353 (repetitive extragenic palindromic) element, contains 2 REP sequences | |||||