mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 33,407 | T→G | 15.8% | V864G (GTG→GGG) | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | 55,437 | A→C | 11.5% | V558G (GTG→GGG) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
| RA | 217,141 | T→A | 2.6% | E545D (GAA→GAT) | proS ← | prolyl‑tRNA synthetase |
| RA | 217,144 | G→A | 2.5% | I544I (ATC→ATT) | proS ← | prolyl‑tRNA synthetase |
| RA | 246,879 | G→A | 3.1% | L56L (CTG→CTA) | yafL → | putative lipoprotein and C40 family peptidase |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 281,089 | A→C | 22.2% | Y299D (TAT→GAT) | yagA ← | CP4‑6 prophage, putative DNA‑binding transcriptional regulator |
| RA | 326,812 | T→C | 15.5% | S146G (AGC→GGC) | betA ← | choline dehydrogenase, a flavoprotein |
| RA | 328,024 | A→C | 14.4% | V237G (GTG→GGG) | betB ← | betaine aldehyde dehydrogenase, NAD‑dependent |
| RA | 337,463 | A→G | 20.4% | E229G (GAG→GGG) | yahF → | putative NAD(P)‑binding succinyl‑CoA synthase |
| RA | 349,642 | A→G | 3.8% | intergenic (+70/‑370) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 349,673 | G→C | 2.8% | intergenic (+101/‑339) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 349,717 | T→C | 4.0% | intergenic (+145/‑295) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 366,509 | C→G | 13.0% | T334T (ACG→ACC) | lacI ← | lactose‑inducible lac operon transcriptional repressor |
| RA | 373,637 | T→G | 19.9% | G239G (GGT→GGG) | mhpF → | acetaldehyde‑CoA dehydrogenase II, NAD‑binding |
| RA | 433,649 | T→G | 19.9% | G65G (GGT→GGG) | ribD → | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| RA | 557,156 | G→T | 3.7% | L196M (CTG→ATG) | folD ← | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase/ 5,10‑methylene‑tetrahydrofolate cyclohydrolase |
| RA | 599,581 | A→G | 19.6% | I290V (ATC→GTC) | cusA → | copper/silver efflux system, membrane component |
| RA | 766,694 | T→A | 16.2% | N237K (AAT→AAA) | mngA → | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component |
| RA | 811,721 | T→G | 30.1% | V67G (GTG→GGG) | bioC → | malonyl‑ACP O‑methyltransferase, SAM‑dependent |
| RA | 825,233 | C→A | 12.9% | M292I (ATG→ATT) | ybhR ← | putative ABC transporter permease |
| RA | 921,243 | G→T | 6.3% | M299I (ATG→ATT) | macB → | macrolide ABC transporter peremase/ATPase |
| RA | 954,360 | T→A | 11.8% | Y36F (TAT→TTT) | focA ← | formate channel |
| RA | 954,374 | C→G | 9.8% | P31P (CCG→CCC) | focA ← | formate channel |
| RA | 989,945 | A→G | 17.2% | S138P (TCA→CCA) | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 1,126,895:1 | +G | 5.5% | coding (90/924 nt) | yceM → | putative oxidoreductase |
| JC | 1,195,194 | Δ3 bp | 2.6% | coding (72‑74/1251 nt) | icd → | isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase |
| RA | 1,196,131 | G→A | 31.0% | A337T (GCC→ACC) | icd → | isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase |
| RA | 1,196,305 | C→T | 49.6% | R395C (CGT→TGT) | icd → | isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase |
| RA | 1,238,523:1 | +G | 3.3% | coding (953/1299 nt) | dadA → | D‑amino acid dehydrogenase |
| RA | 1,287,149 | G→A | 5.9% | noncoding (88/171 nt) R10* (CGA→TGA) |
rttR ← tpr ← |
rtT sRNA, processed from tyrT transcript protamine‑like protein |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,466,201 | T→C | 5.3% | pseudogene (810/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,466,432 | A→G | 9.1% | pseudogene (1041/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,466,438 | T→G | 7.8% | pseudogene (1047/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,466,579 | G→C | 11.1% | pseudogene (1188/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,466,729 | G→A | 4.5% | pseudogene (1338/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,708,758 | G→C | 8.8% | E614Q (GAA→CAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,814 | A→G | 11.0% | A632A (GCA→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,844 | C→G | 12.4% | A642A (GCC→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 2,040,143 | A→G | 21.8% | V222V (GTA→GTG) | yedY → | membrane‑anchored, periplasmic TMAO, DMSO reductase |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,151,689 | G→T | 28.8% | intergenic (+43/+22) | yegJ → / ← yegK | uncharacterized protein/ser/thr phosphatase‑related protein |
| RA | 2,165,068 | G→C | 2.9% | intergenic (+70/‑121) | baeR → / → yegP | response regulator in two‑component regulatory system with BaeS/UPF0339 family protein |
| RA | 2,165,215 | G→T | 4.1% | K9N (AAG→AAT) | yegP → | UPF0339 family protein |
| RA | 2,167,707 | Δ1 bp | 3.8% | pseudogene (108/213 nt) | yegZ ← | pseudogene, gpD phage P2‑like protein D |
| RA | 2,228,227 | G→C | 17.8% | pseudogene (381/1287 nt) | mdtQ ← | pseudogene, putative channel/filament proteins |
| RA | 2,367,397 | T→C | 22.6% | I110T (ATC→ACC) | arnC → | undecaprenyl phosphate‑L‑Ara4FN transferase |
| RA | 2,480,378 | A→G | 16.1% | G393G (GGA→GGG) | dsdA → | D‑serine dehydratase |
| RA | 2,509,878 | A→C | 19.0% | D84A (GAC→GCC) | yfeO → | putative ion channel protein |
| RA | 2,643,098 | Δ1 bp | 2.7% | intergenic (‑256/+29) | rodZ ← / ← rlmN | MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent |
| RA | 2,643,098:1 | +T | 2.9% | intergenic (‑256/+29) | rodZ ← / ← rlmN | MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent |
| RA | 2,643,101 | A→T | 3.2% | intergenic (‑259/+26) | rodZ ← / ← rlmN | MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent |
| RA | 2,643,103 | A→T | 3.2% | intergenic (‑261/+24) | rodZ ← / ← rlmN | MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent |
| RA | 2,643,105 | A→T | 3.2% | intergenic (‑263/+22) | rodZ ← / ← rlmN | MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent |
| RA | 3,053,583 | T→G | 8.6% | N419T (AAC→ACC) | pepP ← | proline aminopeptidase P II |
| RA | 3,206,434 | C→A | 13.3% | intergenic (‑180/‑27) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,436 | G→A | 18.2% | intergenic (‑182/‑25) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,454 | A→G | 8.8% | intergenic (‑200/‑7) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,458 | G→T | 13.8% | intergenic (‑204/‑3) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,465 | T→G | 8.3% | M2R (ATG→AGG) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,469 | C→G | 16.6% | S3R (AGC→AGG) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,474 | G→A | 9.3% | S5N (AGT→AAT) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,475 | T→A | 18.6% | S5R (AGT→AGA) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,481 | G→A | 23.7% | K7K (AAG→AAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,482 | C→A | 13.2% | Q8K (CAA→AAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,492 | T→G | 12.9% | V11G (GTG→GGG) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,493 | G→A | 13.5% | V11V (GTG→GTA) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,504 | C→A | 13.7% | T15K (ACA→AAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,234,702 | G→A | 2.8% | intergenic (‑249/+35) | higB ← / ← rlmG | mRNA interferase toxin of the HigB‑HigA toxin‑antitoxin system/23S rRNA m(2)G1835 methyltransferase, SAM‑dependent |
| RA | 3,364,342 | C→A | 8.0% | S513* (TCA→TAA) | yhcD → | putative outer membrane fimbrial subunit usher protein |
| RA | 3,520,794 | G→T | 11.0% | T75K (ACA→AAA) | hofP ← | DNA catabolic protein |
| RA | 3,528,943 | G→A | 2.7% | V93I (GTA→ATA) | yrfG → | GMP/IMP nucleotidase |
| RA | 3,560,493 | G→A | 8.5% | pseudogene (111/149 nt) | glpR ← | pseudogene, DNA‑binding transcriptional repressor,regulator, Energy metabolism, carbon: Anaerobic respiration, repressor of the glp operon |
| RA | 3,714,370 | G→T | 8.1% | A675D (GCC→GAC) | bisC ← | biotin sulfoxide reductase |
| RA | 3,760,368 | T→C | 16.6% | D294G (GAC→GGC) | selA ← | selenocysteine synthase |
| RA | 3,782,901 | T→G | 17.3% | T254P (ACC→CCC) | gpsA ← | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| RA | 3,782,912 | A→C | 14.9% | V250G (GTG→GGG) | gpsA ← | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| RA | 3,813,071 | A→C | 21.1% | T114T (ACA→ACC) | dfp → | fused 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN‑binding |
| RA | 3,815,499 | T→G | 12.0% | D90A (GAC→GCC) | pyrE ← | orotate phosphoribosyltransferase |
| MC JC | 3,815,858 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,821,098 | G→A | 5.1% | A24A (GCC→GCT) | ligB ← | DNA ligase, NAD(+)‑dependent |
| RA | 3,862,660 | T→G | 29.6% | pseudogene (943/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,661 | T→G | 20.7% | pseudogene (942/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,669 | T→A | 17.9% | pseudogene (934/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,872,494 | T→G | 6.4% | A168A (GCA→GCC) | dgoD ← | D‑galactonate dehydratase |
| RA | 3,971,091 | T→G | 14.5% | G320G (GGT→GGG) | wecB → | UDP‑N‑acetyl glucosamine‑2‑epimerase |
| RA | 3,971,096 | T→G | 16.0% | V322G (GTG→GGG) | wecB → | UDP‑N‑acetyl glucosamine‑2‑epimerase |
| JC | 4,001,644 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,027,131 | A→G | 14.2% | G202G (GGA→GGG) | fre → | NAD(P)H‑flavin reductase |
| RA | 4,145,075 | A→C | 14.6% | N361T (AAC→ACC) | pflD → | putative glycine radical domain‑containing pyruvate formate‑lyase |
| RA | 4,151,328 | T→G | 19.2% | A590A (GCA→GCC) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,184,542 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,219,538 | C→T | 11.0% | A315V (GCG→GTG) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,256,196 | A→C | 16.9% | R90R (CGT→CGG) | plsB ← | glycerol‑3‑phosphate O‑acyltransferase |
| RA | 4,274,842 | T→G | 9.2% | T67P (ACC→CCC) | yjcB ← | putative inner membrane protein |
| RA | 4,296,059 | C→T | 5.4% | intergenic (+266/+378) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,267 | T→C | 10.9% | intergenic (+474/+170) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,307,560 | T→G | 12.8% | T81P (ACC→CCC) | alsK ← | D‑allose kinase |
| RA | 4,342,595 | G→A | 3.3% | A228A (GCG→GCA) | melA → | alpha‑galactosidase, NAD(P)‑binding |
| RA | 4,421,184 | A→C | 17.2% | T402P (ACC→CCC) | ulaA → | L‑ascorbate‑specific enzyme IIC permease component of PTS |
| RA | 4,421,215 | A→C | 13.1% | D412A (GAC→GCC) | ulaA → | L‑ascorbate‑specific enzyme IIC permease component of PTS |
| RA | 4,457,130 | C→G | 16.1% | L449V (CTG→GTG) | mpl → | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| RA | 4,465,779 | T→C | 11.1% | I135V (ATC→GTC) | treB ← | trehalose‑specific PTS enzyme: IIB and IIC component |
| RA | 4,590,880 | T→C | 11.8% | D134G (GAC→GGC) | yjiY ← | putative transporter |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2033585 | 2034051 | 467 | 42 [39] | [36] 48 | rseX–[yedS] | rseX, [yedS] |
| * | * | ÷ | NC_000913 | 4233762 | 4235410 | 1649 | 43 [41] | [41] 43 | [pgi] | [pgi] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 217135 | 148 (1.150) | 5 (0.040) | 5/410 | NT | 3.5% | coding (1641/1719 nt) | proS | prolyl‑tRNA synthetase |
| ? | NC_000913 | = 217144 | 138 (1.110) | coding (1632/1719 nt) | proS | prolyl‑tRNA synthetase | |||||
| * | ? | NC_000913 | = 251816 | 124 (0.960) | 5 (0.040) | 4/412 | NT | 4.2% | coding (919/1056 nt) | dinB | DNA polymerase IV |
| ? | NC_000913 | = 251864 | 109 (0.880) | coding (967/1056 nt) | dinB | DNA polymerase IV | |||||
| * | ? | NC_000913 | 257908 = | NA (NA) | 109 (0.840) | 67/428 | NT | 99.1% | intergenic (+9/‑768) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | = 1293039 | 1 (0.010) | intergenic (‑117/‑488) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | 458787 = | 115 (0.890) | 51 (0.400) | 28/422 | NT | 31.0% | intergenic (+87/‑101) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | 608011 = | NA (NA) | intergenic (+23/‑54) | hokE/insL1 | toxic polypeptide, small/IS186 transposase | |||||
| * | ? | NC_000913 | = 458799 | 108 (0.840) | 54 (0.430) | 41/420 | NT | 33.8% | intergenic (+99/‑89) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | = 609347 | NA (NA) | intergenic (+170/+112) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_000913 | 1207790 = | 33 (0.260) | 120 (1.000) | 75/396 | NT | 82.3% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 21 (0.180) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 33 (0.260) | 92 (0.770) | 64/396 | NT | 78.1% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 21 (0.180) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1293032 = | 2 (0.020) | 138 (1.070) | 78/428 | NT | 98.6% | intergenic (‑110/‑495) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1729156 = | 115 (0.890) | 3 (0.020) | 3/410 | NT | 2.6% | coding (70/4617 nt) | lhr | putative ATP‑dependent helicase |
| ? | NC_000913 | 1729218 = | 118 (0.950) | coding (132/4617 nt) | lhr | putative ATP‑dependent helicase | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 38 (0.310) | 30/412 | NT | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 48 (0.370) | 25/428 | NT | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 104 (0.800) | 64/428 | NT | 100% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | 2514275 = | NA (NA) | 7 (0.050) | 7/422 | NT | 6.0% | intergenic (+33/‑54) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase |
| ? | NC_000913 | = 2536318 | 111 (0.860) | coding (487/510 nt) | crr | glucose‑specific enzyme IIA component of PTS | |||||
| * | ? | NC_000913 | = 2515612 | NA (NA) | 12 (0.090) | 12/424 | NT | 9.9% | intergenic (+171/+29) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase |
| ? | NC_000913 | 2536308 = | 110 (0.850) | coding (477/510 nt) | crr | glucose‑specific enzyme IIA component of PTS | |||||
| * | ? | NC_000913 | = 2643098 | 128 (0.990) | 5 (0.040) | 5/400 | NT | 3.8% | intergenic (‑256/+29) | rodZ/rlmN | MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 2643108 | 136 (1.130) | intergenic (‑266/+19) | rodZ/rlmN | MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | = 2713827 | 140 (1.080) | 4 (0.030) | 4/406 | NT | 2.8% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 2713906 | 143 (1.170) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | 2791460 = | 117 (0.910) | 3 (0.020) | 3/414 | NT | 2.8% | coding (190/1449 nt) | gabD | succinate‑semialdehyde dehydrogenase I, NADP‑dependent |
| ? | NC_000913 | 2791491 = | 99 (0.790) | coding (221/1449 nt) | gabD | succinate‑semialdehyde dehydrogenase I, NADP‑dependent | |||||
| * | ? | NC_000913 | 3220235 = | 102 (0.790) | 5 (0.040) | 5/408 | NT | 4.1% | coding (744/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| ? | NC_000913 | 3220407 = | 139 (1.130) | coding (916/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent | |||||
| * | ? | NC_000913 | = 3424748 | 148 (1.170) | 5 (0.040) +TCTTCTTC |
5/392 | NT | 4.1% | noncoding (2034/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4039546 | 94 (0.740) | noncoding (2029/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 4160851 = | 178 (1.380) | 13 (0.100) | 13/426 | NT | 6.8% | intergenic (‑62/‑272) | sthA/fabR | pyridine nucleotide transhydrogenase, soluble/transcriptional repressor of fabA and fabB |
| ? | NC_000913 | = 4499511 | NA (NA) | intergenic (+10/+83) | insD1/yjgX | IS2 transposase TnpB/pseudogene fragment | |||||
| * | ? | NC_000913 | = 4160857 | 180 (1.390) | 18 (0.140) | 17/426 | NT | 9.1% | intergenic (‑68/‑266) | sthA/fabR | pyridine nucleotide transhydrogenase, soluble/transcriptional repressor of fabA and fabB |
| ? | NC_000913 | 4498183 = | NA (NA) | intergenic (+242/‑90) | intB/insC1 | pseudogene, integrase homology,IS, phage, Tn, Phage‑related functions and prophages, KpLE2 phage‑like element, P4‑like integrase/IS2 repressor TnpA | |||||