Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F3 I0 R1
|
49 |
96.5 |
1638068 |
98.5% |
1613496 |
272.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,909,311 |
Δ774 bp |
100% |
|
[pstA]–[pstC] |
[pstA], [pstC] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3909311 |
3910084 |
774 |
115 [0] |
[1] 116 |
[pstA]–[pstC] |
[pstA], [pstC] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 3909310 | 0 (0.000) | 108 (1.230) |
83/510 |
NT |
100% |
coding (129/891 nt) |
pstA |
phosphate ABC transporter permease |
| ? | NC_000913 |
3910085 = |
0 (0.000) | coding (313/960 nt) |
pstC |
phosphate ABC transporter permease |
GATK/CNVnator alignment
N/A
