Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F17 I0 R1
|
66 |
109.4 |
2318666 |
93.6% |
2170271 |
226.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,336,882 |
T→A |
13.3% |
I51F (ATC→TTC) |
adiC ← |
arginine:agmatine antiporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,336,882 | 0 | T | A | 13.3%
| 187.8
/ 3.5
| 76 | I51F (ATC→TTC) | adiC | arginine:agmatine antiporter |
| Reads supporting (aligned to +/- strand): ref base T (48/17); new base A (2/9); total (50/26) |
| Fisher's exact test for biased strand distribution p-value = 7.16e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.58e-01 |
ATGGTTAATACCAATGGATCTTTCAGAATCGGGAAGAAGTAACTTAAATATCCTACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGAC > NC_000913/4336653‑4337117
|
aTGGTTAATACCAATGGATCTTTCAGAATCGGGAAGAAGTAACTTAAATATCCTACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCac < 2:466752/239‑1 (MQ=255)
ggTTAATACCAATGGATCTTTCAGAATCGGGAAGAAGTAACTTAAATATCCTACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCacca < 1:985701/239‑1 (MQ=255)
ggTTAATACCAATGGATCTTTCAGAATCGGGAAGAAGTAACTTAAATATCCTACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCacca > 1:367107/1‑239 (MQ=255)
aTACCAATGGATCTTTCAGAATCGGGAAGAAGTAACTTAAATATCCTACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCaccaacca > 1:85428/1‑238 (MQ=255)
aTACCAATGGATCTTTCAGAATCGGGAAGAAGTAACTTAAATATCCTACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAAccat < 1:812714/239‑1 (MQ=255)
aaTGGATCTTTCAGAATCGGGACGAAGTAACTTAAATATCCTACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCCGCCAGCAGACGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCCTAAGCGTAAGAACCACCACGCCTTGGGTCGGGGA‑ACCACATTTTCGGGT‑TTACAAAAGAGACCCCCAGCGCACCGaaaagcctcccccacaattccta > 2:82503/1‑220 (MQ=255)
tGGATCTTTCAGAATCGGGAAGAAGTAACTTAAATATCCTACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGCAAGCCCCAGTGCACCGATAATCGTCACCAAACATCCATaaa > 1:771709/1‑239 (MQ=255)
tGGATCTTTCAGAATCGGGAAGAAGTAACTTAAATATCCTACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATaaa > 1:587356/1‑239 (MQ=255)
tGGATCTTTCAGAATCGGGAAGAAGTAACTTAAATATCCTACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATaaa > 1:302950/1‑239 (MQ=255)
tGGATCTTTCAGAATCGGGAACAAGTAACTTAAATATCCTACGCCAATGACCACCATGGCGATATTACCGATCCAGCAGGCCAGCCAGTAGAGGACGTTAGTTTGATAACCGAGAAACGGGCCATAGCAGCGGCGGGCGTTAACGTAAAAAACACCAACGCTTGGGGCCAAGC‑ACAGCAATTTGCCGTAATACAATC‑AGAGCCCCAGTGGCCCGGTAATCGGAaacaaccaatcaataa > 2:297415/1‑231 (MQ=255)
ttCAGAATCGGGAAGAAGTAACTTAAATATCCTACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCaa > 1:646462/1‑238 (MQ=255)
aaTCGGGAAGAAGTAACATAAAGATCCTCCGCAAAGGACCACGATGGGGATCAGGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTGGTTTTGATAACCGAAAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGAAAAACCCACCAGGACTGGGGTCGAGGA‑CCGAATTTTTGGCGT‑ATACCATCGAGCCCCCCAGTGCACCAATAATCGTCACCACCCACCCATAAATGGCAA‑TCCCGc < 2:367107/239‑1 (MQ=255)
aagTAACTTAAATATCCTACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAAACGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAgg > 2:685488/1‑238 (MQ=255)
aCTTAAATATCCTACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGt > 1:381832/1‑239 (MQ=255)
cTTAAATATCCTACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGG‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGtt > 1:656048/1‑239 (MQ=255)
aaTATCCTACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCa > 1:272150/1‑239 (MQ=255)
aaTATCCTACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGCAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCCGGCCTTTGGTCGAGGA‑ACCACATTTTGGCGG‑ATACCATCCAGAGCCCCAGTGCACCGATCATCGTCACCACCCATCCCTAAATGGCAA‑TCCCGCCAGTAACGACCATGGTTGCa > 2:1031455/1‑239 (MQ=255)
tACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCa > 1:376209/1‑232 (MQ=255)
tACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACa > 1:616477/1‑239 (MQ=255)
tACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACa > 1:3991/1‑239 (MQ=255)
tACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACa > 1:163052/1‑239 (MQ=255)
cGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGACCAGGTTTGCAGGTAACAGa > 1:809139/1‑239 (MQ=255)
cGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑ACCCGCCCGGAGAGGCACGGGTTGAAGGTAACAGa > 2:363110/1‑239 (MQ=255)
cGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAAACATCCATAAATGGCAA‑TCCCGCCAGTAAAGGGCACGTTTGCAGGGAACAGa > 2:282772/1‑239 (MQ=255)
cGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCAACAACCATCCATAAATGGCAA‑TCCCGCCAGTAAGGGCCAGGTTTGCAGGTAACAGa > 1:691482/1‑239 (MQ=255)
cGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCAAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGAAATTTTTGCGT‑ATACCATCGAGAGCCCCAGTGCACCGGTAATCGTCATTAACCATCCATAAATGGCAA‑TCCCGCCAGTAGCAGCCAGGTTTCAACGTAACAGa > 2:43177/1‑239 (MQ=255)
aTGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCCGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGGAACAGaaaaaa > 2:396617/1‑238 (MQ=255)
aTGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAac > 1:318591/1‑239 (MQ=255)
aTGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAAACACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCAACGAGAGCCCCAAGGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGCCCAACATTGCAGGGAAccacaaata > 2:915069/1‑231 (MQ=255)
ggCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCa > 1:989347/1‑239 (MQ=255)
ggtatatCGCCGGTCCAGCAGGCCAGCCAGTAGAGGCCGTTGGTTTGAAACCCGAGAAACGGCCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCTT‑ATCCCAGCGAGAGCCCCAGTGCACCGAAAATCGTCACCAACCACCCATAAAGGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGAccc < 1:1094381/233‑1 (MQ=255)
ttGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTTGGACGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATGGTCACCAACCCTCCATAAATGCCAA‑TCCCGCCAGTAGAGGCACGGTCTGCCAGTAACAGAAAAACACCTGCACCCCTAatat > 2:597601/1‑238 (MQ=255)
cagccagAAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGAGTAAGCGTAAGAACAGCCAGGTCGTGGGACGAGGA‑AAGACGTTTTGGCGC‑ATACCACCGAGAGCCCCCGGGCACCGGAAATAGTCACGCGCCAACCATTAAAGGCAA‑TCCCGCCAGTAAAGGCCAGGTTGTCAAGGAACAAAAAAACAACCCACCCCACAAGATTACCCGACACCacctgtg > 2:368597/1‑233 (MQ=255)
gACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGGAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTa > 1:588020/1‑239 (MQ=255)
gTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAg > 1:361375/1‑238 (MQ=255)
ttGGTTTGATACCCGAGAAACGGCCGAAACCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGCCTGGGCTCGAGAA‑ACGACATTTGGCCGA‑ATACCACGGAGAGCCCCAGGGCACCGAAAATCGTCACCACCAACCCAAAAATGTCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGcc < 2:302950/239‑1 (MQ=255)
tGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGccc > 1:663446/1‑239 (MQ=255)
tGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGGAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCCAGAGCCCCAGCGCACCGATAAACGTCACCAACCATACATAAATGGCAA‑ACCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGTAGGGGAATTAGccc > 2:809281/1‑239 (MQ=255)
aTAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTtgt > 2:281210/1‑239 (MQ=255)
aaCGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGagcatcagc > 1:913600/1‑239 (MQ=255)
aaGCGGCGGGGGGCGTAAGCGTAAGAACCCCAAGGACTTGGGTGGAGGA‑ACGACATTTGGGCGT‑ATCCCACCGAGAGCCCCAGTGCACGGAAAATCGTCACCAACCATCCAAAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGa < 1:685488/239‑1 (MQ=255)
agcGGCGCGCGAAAGCTAAACAACCACAGGCACTGGGGCCGAGGA‑ACAACTATGTGCCAT‑AACCCATCGAAACCCCCGCTGCACCGAAAATCGTCACAACCAACCCAAAAAGGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACAt < 2:618999/238‑1 (MQ=255)
cggcggGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAAt > 1:468697/1‑239 (MQ=255)
cggcggGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAAt > 1:79805/1‑239 (MQ=255)
cggcggGCGTAAGCGTAAGAACAACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGG‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAAAAGCAA‑TCCCGCCAGTAGAGGCCAGGTATGACGGTAACAGAAAAACACCTGACCCCATAATAATACCCGAACACATCAGGGCGACGGGGATTAAGCCCACTTTTTGAGCCACAGACTCCGCAGACATAAt > 2:682460/1‑239 (MQ=255)
cgggcgTAAGCGTAAGAACCACCAGGTCTTGGGTCGAGAA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCACCCACCCATAAATGCCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTa < 1:363110/238‑1 (MQ=255)
gcgtaagcgtaaGAACCCCCAGGACTTGGGTCGAGGA‑ACGACTTTTGGGCGT‑ATCCCATGGAGAGCCCCAGTGCACCGATAATCGTCACCAACCACCAAAAAAGGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAAc < 1:398525/141‑1 (MQ=255)
cgataacgtaaagcgccacaagtcTTGGGTGGAGGATACGACATTAGGCCCT‑ATACCTGCGAGGGCCCCAGGGCACCGAAAAACGCCCCAACCCACCCAAAAATGGCAT‑GCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAAc < 2:303792/215‑1 (MQ=255)
aagAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAacac > 2:398525/1‑141 (MQ=255)
ccaGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAACCACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGCCATCATTAAACTCCTGCGAAGGCGAGCTTc > 1:388373/1‑239 (MQ=255)
ccaGGACTTGGGTAGCGGA‑ACGACATTTTGGCGT‑ATACCACCGCGAGACCCAGTGCACCGAAAATCGTCACCAACCATCAATAAATGGCAA‑TCCCGCCAGTAGATGCCAGGGGTGCAGGAAACAGAAAAGCACCTGACCCCATAATATTCCCCGACACCATCAGGGCGACGGGGATTAAGCCAACTTTGTGAGCATCAGCAACCGAAGACGTAATTAAACACCTGCGCAGTCGTGCtac > 2:284116/1‑237 (MQ=255)
caGGACTTGGGTCGAGGC‑ACGCCATTTTGGCGT‑ATACCATCGAGAGCCCCCGTGCACCGATAATCGTCACCACCCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCGGGTTTGCAGGTAACAGAAAAACCCCTGACCCCCTAATATTCCCCGACACCATCAGGGTGCCGGGGCTTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACCTAATTAAACTCCTGCGACGGCGCGCtta > 2:554764/1‑237 (MQ=255)
gggTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATa > 1:589199/1‑239 (MQ=255)
aGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTAc > 1:422417/1‑239 (MQ=255)
a‑aCGACATTTTGGCTA‑ATACCACCAAGAGCCCCAGTGCACCGAAAACCGCCACAACCCATCAATAAATGGAAA‑TACCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGt < 1:282772/238‑1 (MQ=255)
aCGACATTTTGGGGT‑ATCCCAGCAGGAGCCCCAGTGCCCCGATAACCGTCCCCAACCACCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGtca < 1:1031455/239‑1 (MQ=255)
aCGAAATTTTGGCGT‑ATGCCATCGAGAACCCAATTGACCCGATAAGCCTCACCAACCATCCATAAATGCCAA‑CCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGtca < 1:152884/239‑1 (MQ=255)
cATTTTGGCGT‑ATCCCAGCGAGAGCCCAAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑CCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGtcatat < 1:43177/238‑1 (MQ=255)
gCGT‑ATCCCATCGAGACCCCCAGTGCACCGATAATCGCCACCAACCATCAAAAAATGGCAC‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGc < 2:163052/238‑1 (MQ=255)
cctatcccaccggaaggcccAGTGCCCCCTAAATCCACCCCAACCAACCAAAAAAGGCAACCCCCGCCAGTAGAGGCCAGGTTTGCAGTTAACAGAAAAACCCCTGCCCCCATAATATTCCCCAACACCATCAGGGTGCCGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGc < 1:460973/221‑1 (MQ=255)
t‑ataCCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGc > 1:904189/1‑239 (MQ=255)
taCCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCAt > 2:277742/1‑239 (MQ=255)
atggagaGCCCCTGTGCCCCGAAAACTCCCACCAACAATCAAAAAATGGCAA‑CTCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGa < 1:1108221/236‑1 (MQ=255)
aTCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑CCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGa < 1:396617/239‑1 (MQ=255)
tCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGAt > 2:567466/1‑239 (MQ=255)
tCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGAt > 1:529753/1‑239 (MQ=255)
taggtccccgttcaaCCGATAACCGTCACAAACCATCGAAAAAGGTCAA‑CTCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAg < 1:158752/225‑1 (MQ=255)
ccccAGTGCCCCGAAAATCGGCAACAACCACACAAAAATGGAAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGaa < 2:904189/239‑1 (MQ=255)
cccAGTGCACGGATAATCGCCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCt < 1:932025/87‑1 (MQ=255)
cccAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCt > 2:932025/1‑87 (MQ=255)
cccAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAat > 2:695104/1‑239 (MQ=255)
aGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGa > 1:470078/1‑227 (MQ=255)
cgccacaaTAATCACCACCAACAATCAAAAAACGACAA‑CCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAattatt < 2:910914/231‑1 (MQ=255)
aCCGATAATCCTCACCACCCACCCAAAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATc < 1:597601/238‑1 (MQ=255)
gtaTAATCGCCCCAAACCAACCATAAGGGGAAT‑CCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGAc < 2:529753/237‑1 (MQ=255)
cGATAACCGTCACCAACCAACAAAAAAGGGCAA‑CCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGa < 2:910858/151‑1 (MQ=255)
aTAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGtcatatcata > 1:13687/1‑205 (MQ=255)
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ATGGTTAATACCAATGGATCTTTCAGAATCGGGAAGAAGTAACTTAAATATCCTACGCCAATGACCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGA‑ACGACATTTTGGCGT‑ATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAA‑TCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGAC > NC_000913/4336653‑4337117
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
