Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F9 I0 R1
|
105 |
139.1 |
2894862 |
97.5% |
2822490 |
224.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,862,660 |
T→G |
29.6% |
pseudogene (943/1617 nt) |
glvC ← |
pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,862,660 | 0 | T | G | 29.6%
| 50.7
/ 16.7
| 67 | pseudogene (943/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| Reads supporting (aligned to +/- strand): ref base T (20/26); new base G (17/3); total (38/29) |
| Fisher's exact test for biased strand distribution p-value = 2.57e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
CCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑TGC‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAA > NC_000913/3862424‑3862888
|
cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑Tg < 1:1213083/239‑1 (MQ=255)
tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑TAG‑GG‑TGC‑gggg > 1:207405/1‑238 (MQ=255)
tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑TGC‑GGGa < 2:684848/239‑1 (MQ=255)
tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑CT‑TAG‑AG‑TGC‑gggg > 1:986196/1‑238 (MQ=255)
aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGATT‑AAG‑GT‑TG‑‑GGGAATCac > 2:248536/1‑238 (MQ=255)
aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑TGC‑GGGGATCa > 1:185378/1‑238 (MQ=255)
cAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GG‑TGCGGGGAATCacaaaccc > 1:502906/1‑231 (MQ=255)
atatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAG‑GT‑TGC‑GGGAATCA‑A‑C‑AAGcccc‑ccccctt > 2:1081795/1‑234 (MQ=255)
cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAA‑GG‑TGC‑GGGGATCA‑G‑C‑AAACCCC‑CCA‑C‑TTTTT‑CCCgg > 1:1097435/1‑238 (MQ=255)
cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGAAAATTCCAGCGGTTCGGTAACTCCCACCAGCATGGC‑GG‑GT‑AAGCGT‑TGG‑GGGaacaacaacccacccacattcacac > 2:244337/1‑214 (MQ=255)
gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGTGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑TAG‑GT‑TGC‑GGGAATCA‑G‑C‑AAACCCG‑CCA‑C‑tttttacccttttt > 1:109894/1‑229 (MQ=255)
gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑TAA‑GT‑GGC‑GGGGATCA‑G‑C‑AACACCC‑CCC‑C‑TTTTT‑CCCCAttt > 1:773953/1‑238 (MQ=255)
gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCACATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAACAACGGAGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GA‑AAA‑CT‑TGC‑AGGGACAA‑A‑C‑AAGCTCG‑CCC‑C‑ATTTA‑ACCCAtttt > 2:1040278/1‑239 (MQ=255)
gaccttgggaacccAGTTGGGCGGAAACACGTAGTAAACCAGCCTCCCGCCCATGTGGCCCACCACCCAAAAGAGAAAAATCACGGTCGAAAGTGAGGCCACGAGCCGGGCGTGTCCCCCAAACAGCAACGTGAAAAAGAAGAGGAAGGAAAATCCCGGCGGTTGGGTAATCCCCCCCAGCAGGGC‑GG‑TT‑AAG‑GT‑GGG‑GGAAATAA‑G‑G‑AACCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTg < 2:366749/227‑1 (MQ=255)
aaCGTCGGGATCCGTTTTTGCAGAAAACCCTAGCCAATCAGCCCCCCCCCCATGTCCCCCACCACACCAAAGAAATACATGCCGGTCGACATGGAGGCCGCCAGCACGGGGTGTACCGCAAACAGCAACGGGGAAATGAACAGGAAGTTAAATCCCGGCGGTTGGGTAATCCCCCCAAGCTGGGG‑GG‑TT‑AAG‑GT‑TGG‑GGAAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTg < 2:835676/238‑1 (MQ=255)
cgggcGGGATCCAGTTTCGCGAAAAACCCTACCAAACCAGCCCCCCCCCCATTGTCCCCCCCACACAAAAGAGATACATTACGGTCGACATGGAGGCCGCCGGCACGGCGTGACCCAAAAACAGCAACGGTGAAATGAACGGGAAGGAAAACCCCGGCGGTTCGGTAATCCCCACCAGAAGGGG‑GG‑TT‑AGG‑GT‑GGG‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTg < 2:639637/233‑1 (MQ=255)
ggATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGG‑TA‑AAG‑GT‑GGG‑GGGAATAACG‑A‑AAGCGC‑‑CCC‑C‑TTTTA‑‑CCAATTTTCTGGTgggggcgag > 2:1249681/1‑234 (MQ=255)
cattttgGCGGAAAAACATCGTAAACCACACCCCCCCCAATGTCCCCCACCACACAAAAGAAATACATCGGGGTCGACATTGAGCCCGCCAGCAGGGCGTGTCCCGCAAACAGCAGCGGTAAAAGGAAAGGGAAGGTAAATCCCAGCGGTTCGGTAACCCCCCCCAGCAGGGC‑GG‑TT‑AAG‑GT‑TGC‑GGAACTAA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTa < 2:207405/236‑1 (MQ=255)
cagtttggtgaaaaaaCCTAACCAACCAGCCCCCCGCCCATGTCCCCCCCCACCCAAAATAGAAACATTCGGGTGTAAGTGGCGGCCACCAGCAGGGCGTGTGCCGAAAACAGAAAGGGTAAAAGGAACGGGATGATAAGTCCCAGCGGTGGGGAAATCCCCCCCAGTTTGCG‑GT‑TT‑AAG‑TT‑TGC‑GGAAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTa < 2:524086/227‑1 (MQ=255)
aGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GG‑TTC‑GGGGATCA‑G‑C‑AAGCCCC‑CCA‑C‑TTTTA‑CCCCATTTTTCTGTGCGGC‑AGTGAAGTAc > 1:762962/1‑239 (MQ=255)
ttttGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TTAAAG‑GT‑GGG‑GGGAAT‑A‑G‑C‑AAACCCG‑CCC‑C‑CTTTT‑CCCGATTTTCCGGTgggggcggggaggcg > 1:639637/1‑226 (MQ=255)
tttgggcaaaaaaCCTATACACTCAGCCCCCCGCCCAGGTCCCCCCCCACCCAAAAGAGAAACATTACGCGCGAAATGGAGGCCGCCAGCAGGGGGTGTACCGAAAACAGAAACGGGAAAAGGAACAGGAGGTTAAATCCCGGCGGTGCGGTAATCCCCACCAGCATGGG‑GG‑TT‑AGG‑GT‑GGG‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACAt < 2:1041887/230‑1 (MQ=255)
tttGGGATAAACCCGGGTCAACCCGACCCCCCCCCTTTTGCCCCCCCCCACAAAGGACATACTTTAGGGTGGACATGGAGGCCGCCAGCCCGGCGGGACCCCAAAACAGACACGGAGAAATGATAAGGAGGGAAAGTCCAAGCGGAGCGTTACTTCCCCCCGGCATGGG‑GT‑TT‑AGG‑GT‑GGG‑GGGAAGAA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTAc < 2:874743/236‑1 (MQ=255)
tgcgggaaaaaCCTAGTAAACCAGCCCTCCGCCCATGTCGCCCCCCACACAAAAAAGATACATTACGGTGGAAATTGAGGCCGCCGGCCCGGCGTGAACCGAAACCACAAAGGGAGAAAGAAACAGGAAGTAAAATCCCAGCGGTTCGGTAATCCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑TGG‑GGAAAACA‑G‑A‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCg < 2:1097435/232‑1 (MQ=255)
aaaCCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAA‑GG‑TGT‑GGGGATCA‑G‑C‑AAAACCG‑CCC‑C‑TTTTT‑TCCGATTTTTCCGTGCGGC‑GGTGGAGGACATCGCTaaaaaa > 1:231935/1‑239 (MQ=255)
tCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGG‑TT‑AAG‑GT‑TGG‑GGGAA‑CA‑A‑C‑AAAGCCC‑CCC‑C‑TTTTATCCCGTTTTTCCGGTGGGGC‑GGGAAAGAAC‑TCGCCAAAGAAAAGcccc > 2:316051/1‑237 (MQ=255)
tCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAA‑GG‑TGG‑GGGGATCA‑G‑C‑AAGCCCC‑CCC‑C‑CTTTT‑CCCCATTTTCCGGGGCGGG‑AGGGGAGTACAACCCCTAAAAAAAGCCCCCGGc > 1:136869/1‑238 (MQ=255)
tCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑CT‑AAG‑GA‑TTC‑GGGGATCC‑G‑C‑ACACCCC‑CCC‑C‑CTTTA‑CCCCAATTTTCCGTGCGGC‑GGTGAATGACATCGCCAACAAAATGctcccgac > 2:517063/1‑231 (MQ=255)
cAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GG‑TGC‑GGGGATCA‑G‑C‑AAGCCCC‑CCC‑C‑TTTTA‑ACCGCTTTTCCGGGGGGGG‑AGTGAAGGACATCGCTAAAAAAATGCCCACGGCa > 1:968735/1‑238 (MQ=255)
aCCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑TTC‑GGGGAACA‑G‑CAAACCCCC‑CCC‑C‑TTTTA‑CCC‑ATTTTTCGGTGCGGC‑AGTGGAGTACATCGcctgtctcttttacccatcctcgg > 1:366214/1‑216 (MQ=255)
cGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAG‑GG‑TGC‑GGGGAACA‑G‑C‑AAACCCG‑CCC‑C‑TTTTT‑CCCCGTTTTTCGGTGCGGG‑CGGGGAGTACACCGCCAAAAAAAAGCCCCCCGGCCCCAAGAtt > 1:535343/1‑239 (MQ=255)
gaaaaagaacaagccaaaaaGAGAAAAATGACGGTCGAAATGGAGGCCGCCAGCAGGCGGTGCCCCAAAAACAGAAACGGTAAAAAAAACAGAAGGAAAAATCCCGGCGGTTGGGTAATTCCCACCAGCATGGC‑GT‑TT‑AAG‑GT‑TGG‑GGAAATCA‑G‑C‑AACCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTg < 2:890572/221‑1 (MQ=255)
tGTTGCCCACCACACCAAAGAAATACATTACGGACGACATTGAGGCCGCCAGCACGGCGTGTCCCGCAAACAGCAACGGTGAAATAAACAGGAAGGAAAATTCCAGCGGTTCGGTAATCCCCACCAGCATGGC‑GT‑TT‑AAG‑GT‑TGC‑GGGAATCA‑G‑A‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑g < 1:1037355/239‑1 (MQ=255)
ggtcccccACCACCCAAAAGAGATACATTACGGTCGACATGGAGGCCGCCAGCACGGGGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGATAAATTCCAGCGGTTCGGTAACTCCCACCAGCAGGGC‑GG‑TA‑AGG‑GT‑TGC‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTg < 1:1427858/232‑1 (MQ=255)
accacaccaAGGAGCAACATTGCGGTAGGAATGGGGGCCGCCGGCACGGCGGGTCCCGCAAACAGCAACGGTAAAATGAAAAGGAAGGTAAATCCAAGGGGTTCGGTAATCCCCACCAGCAGGGC‑GT‑TT‑AGG‑GT‑GGG‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑g < 2:1098257/239‑1 (MQ=255)
cacaccaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAA‑GT‑TGC‑GGGGAACA‑G‑C‑AAGCCCC‑CCA‑C‑TTTTA‑CCCGATTTTTCGGGGGGGC‑GGGGAAGGAAAACGCTAAAAAAATGCCCACCGCACCACAGAATTTTGAGGTTACCGT‑ga > 1:1151775/1‑238 (MQ=255)
accaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCGCGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATCCCCCCCAGCAGGGC‑GG‑TT‑AAG‑GT‑GGC‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCAc < 1:44161/207‑1 (MQ=255)
caAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAA‑GG‑TGC‑GGGGATCC‑G‑C‑AAACCCG‑CCC‑C‑TTTTT‑CCCGCTTTTTCCGGGCGGC‑AGGGAGATACATCGCCAAAGAAACGGCCCCCGCACCCAAACTATTTTA‑GGTACCCT‑GCA‑gggga > 2:1030318/1‑237 (MQ=255)
aTACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑TGC‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGGAGTACATCGCTAAAGAAATGCCCACGGCACCCAAGATTTTTGA‑GTTACCGT‑GCA‑CGG‑GA‑AAACCg > 2:770245/1‑238 (MQ=255)
tACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GG‑TGC‑GGGGATCA‑G‑C‑AAACCCG‑CCC‑CTTTTTC‑CCCGTTTTTCCGG‑GCGGG‑AGGGGAGGAAACCGCCCAAAAAAAGCCCCCCGGCCCCAAGATTTTTTT‑GTTTCCCTGGCA‑GGG‑CA‑AAAccc > 1:696034/1‑237 (MQ=255)
tACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAA‑GG‑TGC‑GGGGATCA‑A‑C‑AAACCCC‑CCACC‑TTTTC‑CCCCTTTTTCCGG‑GGGGC‑AGTGGAGAACAACGCTAAAGAAAAACCCACCACACCAAAAAATTTTTG‑GTTAACGG‑Gcccgtttcttttaca > 1:890572/1‑225 (MQ=255)
cATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGGGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAA‑GG‑TGC‑GGGGAACA‑G‑C‑AAACCCC‑CCC‑C‑TTTTA‑CCCCATTTTTCGGGGCGGG‑AGTGAAAGACAACGCCAAAAAAATGACCACGGCACCAAAAATTTTTTA‑GTTACCCT‑GCACGGG‑CA‑AAAcccct > 2:537825/1‑235 (MQ=255)
cGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGG‑TA‑AAG‑GT‑GCC‑GGGAACAA‑C‑C‑AAGCCC‑‑CCC‑C‑CTTTA‑TCCCATTTTTCGGGGCGGCGCGGAAAGAACAACCTCAAAAAAATCCCACCGGCCCCAAAAATTTTTTA‑GTTTCCGG‑GAG‑GGG‑AC‑AAACCCCCTTcccg > 2:491274/1‑237 (MQ=255)
cGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGATG‑AAG‑GT‑TG‑‑GGGAATTA‑G‑G‑AAACCCC‑CCA‑C‑CTTTT‑CCCGATTTTTCCGGGGGGG‑AGTGGAGTAAAACGCTAAAAAAAAACCCACAGCACCAAAGAATTTTGA‑GATAACGT‑GGC‑AGG‑CA‑AAAACGCCTTCCggg > 2:1382028/1‑239 (MQ=255)
gTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GG‑TGG‑GGGGATCA‑G‑CAAAGCCCC‑CCC‑T‑TTTTA‑CCC‑ATTTTTCCGTGCGGC‑CGTGGAGGAAAACGCCAAAAAAAAGCCCCCCGCCCCCAAGAATTTTTA‑GGTACCGG‑GCA‑GGGCCA‑AAACCCCCTCCCGGGa > 1:1048976/1‑239 (MQ=255)
gACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑TAG‑GG‑TGC‑GGGAATCA‑A‑C‑AAAACCGCCCC‑C‑TTTTC‑CCCCATTTT‑CGGTGCGGG‑CGTGAAGGACAACCCTAAAAAAAAACCCACCGCACCCCAAATTTTTTA‑AGTAACGT‑TGA‑GGG‑CA‑AAACCCCCTCCCGGGaaaca > 2:1424731/1‑236 (MQ=255)
gACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑GT‑AAG‑GT‑TGC‑GGGGAACA‑G‑C‑AAGACCC‑CCA‑C‑CTTTT‑CCCGATTTTTCGGTGCGGC‑AGGGAAGTAACACGCTAAAGAAAAGCCCCCCGCACCAAAGATTTTTTA‑GGTAACGG‑GCC‑AGG‑GA‑AAACCCCCCTCCCGGaacaa > 2:234796/1‑239 (MQ=255)
gccAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GG‑TTC‑GGGGAACA‑G‑C‑AAGCCCC‑CCA‑C‑ATTTA‑ACCGATTTTTCGGTGGGGC‑AGGGAAAGAAAATGCCAAAAAAAAGCCCCAGGCCCCAAAAATTTTTTG‑GTTCCCGG‑CCG‑GGG‑CA‑AAACCCCCTTCCGGGAAAAACAAttctaccg > 2:1072488/1‑232 (MQ=255)
gccAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAA‑GG‑TGT‑GGGAATCA‑GAA‑AAGCCCC‑CCC‑C‑TTTAC‑CCCCATTTTCCGG‑GCGGG‑GGGGAAGGACAACGCCAAAAAAAAGCCCCCCGCACCCAAAATTTTTTG‑GTTATCCT‑GTA‑TGG‑CACAAAACCCCTCCCGGGagaaaaatttataccg > 2:402350/1‑224 (MQ=255)
caaaaCAGCAAGGGTGAAATGAACAGGAAGGAAAATCCCGGCGGTTCGGAAATTCCCACCAGCATGGC‑GG‑TT‑AGG‑GT‑GGG‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGaa < 1:994202/237‑1 (MQ=255)
aaaaaCAGCAGCGGTGAAATGAACAGGAAGGTAAATCCCAGCGGTTCGGTAATCCCCACCAGCATGGG‑GG‑TT‑AAG‑GT‑TGC‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGaa < 1:1438721/237‑1 (MQ=255)
cAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAA‑GT‑TTC‑GGGGATTA‑A‑C‑AAACCCC‑CCC‑C‑CTTTT‑CCCGGTTTTTCGGTGCGGC‑AGGGAAGTAAATCGCCACAAAAAAACCCCCAGCACCAAACACTTTTTA‑GTTACCCC‑TCA‑GAG‑CA‑AAACCGCCTGCCCGGGACAACCAATTTAGCGGAGCGGCGCtacacactca > 2:1386523/1‑229 (MQ=255)
aaaGCAACGGTAAAAGGAACATGAAGGTAATTCCCAGCGGTCCGGAATCCCCCCCCAGCGTGGG‑GG‑TT‑AAG‑GT‑GGG‑GGAAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAActct < 2:136869/237‑1 (MQ=255)
aaCGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑TTC‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCCCCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCCCCAACTGAACTCTTGccg > 1:309975/1‑237 (MQ=255)
cGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑TGC‑GGGAATCA‑G‑C‑AAGACCC‑CCC‑C‑CTTTA‑CCCGATTTTCCGGTGCGGC‑CGGGAAGTACATCGCTCAAGAAATTCCCACGGCACCCAAGATTTTTTA‑GGTAACCC‑GCA‑GGG‑GA‑AAAACGCCTTCCGGGAAAAACGATTTCCACGGCCCGGAGCCCAAACAGaaacacttcagat > 2:446498/1‑228 (MQ=255)
gaaaagacagggagtgaaatctCCAGCGGTAGGGTAA‑TCCCCCCCGCCGGGG‑GG‑TT‑AAG‑GTGTGC‑GGAAACAA‑A‑A‑AACCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGAtgct < 2:968735/217‑1 (MQ=255)
aaaagaaaGGAAAATCCCGGCGGTCGGGAAATTCCCCCCAGCATGGC‑GT‑TA‑AGG‑GG‑TGC‑GGGAACCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:530942/231‑1 (MQ=255)
aaaagaaaGGAAAATACCAGCGTTTGGTAAATCCCCACCAGCAGGGG‑GG‑TT‑AGG‑GT‑GGG‑GGAAAACA‑G‑A‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 2:1419186/231‑1 (MQ=255)
aaaaGGAAGGTAAATTCCAGCGGTTCGGTAATCCCCACCAGCATGGC‑GA‑TT‑AGG‑GT‑GGC‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:770245/234‑1 (MQ=255)
agaggatgtaaaaTCCCAGCGGTACGGTACTCCCCACCGGCATGGC‑GG‑TT‑AAG‑GT‑TGC‑GGAAAGCA‑G‑C‑AGGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAg < 1:780352/229‑1 (MQ=255)
aCAGGAAGTTAAAGTCCAGCGGTTCGTTAATCCCCCCCAGCATGGC‑GG‑TT‑AAG‑GG‑TGC‑GGGAATAA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAg < 1:650117/239‑1 (MQ=255)
gAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑TAA‑GT‑TGC‑GGGAATCA‑G‑C‑AAACCCC‑CCC‑C‑TTTTT‑CCCCATTTTCCGGTGCGGC‑CGTGAAGTACATCGCTAAAAAAATTCCCACGGCACCAAAAATTTTTTA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACCACGATTTCAGCGGCTCCGCGCTCCAACTTAAATCCTGCAGATGCTCTGccccctac > 2:530942/1‑233 (MQ=255)
ggtttggttAATCCCCCCCAGCAGGGC‑GG‑TT‑AGG‑GT‑TGC‑GGAAAACA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCt < 1:316051/230‑1 (MQ=255)
actccaccaagaggggC‑GG‑TA‑AGG‑GT‑GGC‑GGAAACAA‑G‑C‑AACCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGc < 2:696034/225‑1 (MQ=255)
caccaGAATGGC‑GG‑TA‑AAG‑GT‑GGG‑GGGAATCA‑G‑A‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc < 1:9660/239‑1 (MQ=255)
cacaaGGATGGG‑GG‑TT‑ACG‑CG‑TGT‑GGGAATGC‑G‑A‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTGCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATTCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACATCTGCCGGAc < 2:107189/239‑1 (MQ=255)
ggg‑TT‑AGG‑GT‑TGG‑GAGAAGCA‑G‑C‑AGGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa < 1:84386/237‑1 (MQ=255)
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CCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑TT‑AAG‑GT‑TGC‑GGGAATCA‑G‑C‑AAGCCCG‑CCA‑C‑TTTTA‑CCCGATTTTCCGGTGCGGC‑AGTGAAGTACATCGCTAAAGAAATGCCCACGGCACCAAAGATTTTTGA‑GTTACCGT‑GCA‑GGG‑CA‑AAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAA > NC_000913/3862424‑3862888
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
