Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F18 I0 R1 274 115.5 2655328 86.7% 2302169 226.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,771,322 G→A 10.7% I19I (ATC→ATT)  yibH ← putative membrane fusion protein (MFP) component of efflux pump

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,771,3220GA10.7% 285.5 / 2.9 120I19I (ATC→ATT) yibHputative membrane fusion protein (MFP) component of efflux pump
Reads supporting (aligned to +/- strand):  ref base G (49/55);  new base A (7/7);  total (57/63)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 121 total aligned reads displayed.

AACGAACCGGGTCGAGCTTAAAAAGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCACGCTCCGGTTGATAGAGCGTCGCCCAG  >  NC_000913/3771084‑3771552
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                        
aaCGAACCGGGTCGAGCTTAAAAAGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGGAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAg                                                                                                                                                                                                                                          <  2:797103/239‑1 (MQ=255)
   gAACCGGGTCGAGCTTAAAAAGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCGC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGGGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGCCGCCACCCGCCCCTCATTTACACGGAGGCGGAGGAtt                                                                                                                                                                                                                                       >  1:1319237/1‑239 (MQ=255)
       cGGGTCGAGCTTAAAAAGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCCCTCACCAGAAAAACGCCTCCCAGCCCCGCCGCCGCCAGCGTCACCTGATTTACCGGAAGCCGGAAACTTTTaa                                                                                                                                                                                                                                   >  1:1276686/1‑239 (MQ=255)
         ggccGAGCTTAAAAAGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAAGTTTTAAAg                                                                                                                                                                                                                                 >  2:301788/4‑239 (MQ=255)
         ggTCGAGCTTAAAAAGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTTGAGTTCATCAACCAAATCAAACCACTCCCCAGAAACACGCCTCCCCGCCCCCCCGCCGCCAACGCCCCACGATTTACCGGAAACGGGAAAATTTTaaaa                                                                                                                                                                                                                                 >  1:1059480/1‑238 (MQ=255)
         ggTCGAGCTTAAAAAGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCCCCGCCGTCGCCAGCGCCCACTGATTTACCGGAATGCGGACAATTTTAAAg                                                                                                                                                                                                                                 >  2:856126/1‑239 (MQ=255)
         ggTCGAGCTTAAAAAGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAAAACGCCTCCCAGGGCCGCCGTCGCCAGCGTCCACTGATTTAACGGAAACCGGAAGACTTTAAAg                                                                                                                                                                                                                                 >  1:274684/1‑239 (MQ=255)
         ggTCGAGCTTAAAAAGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTCCCTTTTGCGCGGT‑AAAAGTGTAAGTGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACCCCTCCCAGCGCCCCCTCCCCCACCGCCCACCGCTTTACCGCAATCCGGAAAATTTTaaaa                                                                                                                                                                                                                                 >  1:710741/1‑238 (MQ=255)
                cTTAAAAAGCCCCTTCCCCTTTTTAATAAGCTGATTATTCTTGTCAGGGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGcc                                                                                                                                                                                                                           <  2:569764/238‑1 (MQ=255)
                 ttAAAAAGCCCCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGcc                                                                                                                                                                                                                           <  2:1276686/237‑1 (MQ=255)
                    aaaaGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAAAACGCCTCCCAGAGCCGCCGACGCCCGCGTCCACTCATTTACCGGAATGCGGAAAATGTTAAAAACCGcccccc                                                                                                                                                                                                                       >  1:456483/1‑235 (MQ=255)
                    aaaaGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGGCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGc                                                                                                                                                                                                                      <  2:496625/239‑1 (MQ=255)
                         tcccTCGCCTTTTTGCATAAGCTGATTATGCTTGTCAGGGACTTCAGG‑CATAATACCCGTCACACTG‑GGCGTGACAGGGATCGCTATCCCTGCATTTTGCGCGGT‑AAACGTGTAAGGTTGCTTGTAGTTCAGCAACAAAATCAATCCACACACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAgcg                                                                                                                                                                                                                 <  1:786123/237‑1 (MQ=255)
                              ctcccTTTTGAATTAGCTTGTTTTTTTTGGC‑GTGTCATTCGTAAACAATTCCCGTAGC‑CTGGGGCGTGATAGGGATCGTTAGCCTCTCCTTTTGCGCGGT‑AAAAGTGGAAGGGTGGTTTTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACg                                                                                                                                                                                                            <  1:187242/237‑1 (MQ=255)
                                     ttGAATAAGCTGATTATTCTTGGCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTa                                                                                                                                                                                                     <  2:1059480/239‑1 (MQ=255)
                                       taaTAAGCTTGTTTTTCTTTTCAGTGTCTTCAAT‑AACCTTTCCCGTCAC‑CTGGGGGGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAACCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTaaa                                                                                                                                                                                                   <  1:301788/238‑1 (MQ=255)
                                          tAAGCTGATTGTCTTTGTCATTGACTTCATT‑ACCATTTCCCGTCAC‑CTGTGGCGGAAGAGGAATCGCTTTCACGGCCTTTGGCGCGGT‑AAAAGTGTAAGGGTGTTTGGAGGTCAGCAACAAAATCAAACCCCTCACCAGAAACACACCGCCGAGCGCCGCCGACGCCAGCGGCCACTGATTGACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAAca                                                                                                                                                                                                <  1:617194/239‑1 (MQ=255)
                                          tAAGCTGATTATTCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAAca                                                                                                                                                                                                <  2:163623/239‑1 (MQ=255)
                                             gCTGTTTATTCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑ATAAGTGTAAGGGAGGTTGTAGTTCATCAACACAATCAAACCACTCACCCGAAACCCGCCCCCCCGCGCCGCCGTCGCCAACGTCCACCGATTTACCGGCATGCGGAAGATTTTAAACACACCCCCCGGCAGCGCCACAAAAGTTaaaaacaaa                                                                                                                                                                                             >  1:707270/1‑234 (MQ=255)
                                             gCTGATTATTCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAGACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGCTTTACCGGAATCCGGAAGATTTTAAAAACCGCCCACGCCAGCGCCCCGGAAGTTCaaaaaaca                                                                                                                                                                                             >  1:143975/1‑237 (MQ=255)
                                             gCTGATTATTCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAAcaatc                                                                                                                                                                                             >  2:888691/1‑239 (MQ=255)
                                             gCTGATTATTCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAAATTTTAAAAACCGCCCACGCCAGCGCCCCGGAAGTTAAACcaatc                                                                                                                                                                                             >  2:75017/1‑239 (MQ=255)
                                               tGATTTTTTTTGTAAGTGTCTTCAGT‑AACAATTCCGGGCAC‑CTGTGGCGTGATAGGTAGCGCTATCACTGCCTTTTGCGCGGT‑AAAAGGGTAAGGGGTGTGGTAGTCCATCAACAAAATCAAACCACTCACCAGAAACACGCCCCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAAcaatc                                                                                                                                                                                             <  1:1244503/237‑1 (MQ=255)
                                                 attattCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCCCTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCCACAAAATCACACCACTCACCAGAAACACGCCCCCAAGCGCCGCCGTCCCCAACGCCCACCGATTTACCGGAATGCGCAACATTTTAAAGACCCCCCACGCCAGCCCCACGACATTTAcaacaacaacaa                                                                                                                                                                                         >  1:1098819/1‑233 (MQ=255)
                                                 attattCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCAATGATTTACCGGAATCCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTCAGTTAAACCAATCAATa                                                                                                                                                                                         >  2:783911/1‑239 (MQ=255)
                                                 attattCTTGTCAGGTACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATa                                                                                                                                                                                         <  2:216892/239‑1 (MQ=255)
                                                      tctttgcAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGGCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATcc                                                                                                                                                                                    <  2:855715/233‑1 (MQ=255)
                                                      tCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAGACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATcc                                                                                                                                                                                    <  2:143975/239‑1 (MQ=255)
                                                               tGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCCCCACGTAAGTTAAAAAAAAAAATAAAACCa‑aaaaaag                                                                                                                                                                           >  1:1052834/1‑234 (MQ=255)
                                                                          aaCAATTCCCGTCCC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGa                                                                                                                                                                 <  2:274684/238‑1 (MQ=255)
                                                                           aCAATTCCCGTCAC‑CTGTGGCGTGAGAGGGATCGCTATCCCTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAAc                                                                                                                                                               <  2:603495/239‑1 (MQ=255)
                                                                              aTTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATTCGGAAGATTTTAAAGACCGCCCCCGCCAGCGCCCCGTAAGTTAAAACAATCAATAAGTCCC‑AAATTAAAACTCCGGGAACATg                                                                                                                                                            >  2:506729/1‑239 (MQ=255)
                                                                              aTTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGCTTTTAAAGACCCCCCCCGCCCGCGCCCCGTAAGTTAAAACAAACAATAGATCCA‑TAAATAAATCTCCGGGAACggg                                                                                                                                                            >  1:1021825/1‑237 (MQ=255)
                                                                                 cccGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCTCTCACCAGAAACACGCCTCCCAGCGCCTCCGTCGCCAGCGACCACCGATTTACCGGAATGCGGAAGATTTTAAAACCCGCCCACGCCAGCGCCACGTCAGTTACAACAATCAATAGATCCA‑TAATTAAATCTCCGGGAACGTGGaa                                                                                                                                                         >  2:75128/1‑239 (MQ=255)
                                                                                      tcgtcTGTGGTGTGATAGGGTTCCGTTTCACTCCCTTTTGCGCGGT‑AAAAGTGTACGGTGGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACCCGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATagt                                                                                                                                                     <  1:1064193/235‑1 (MQ=255)
                                                                                      gcccctttggtgggagtgggACCCCTAGCCCTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCTCCCACCAGAACCCCGCCTCCCAGCGCCGCCTTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATagt                                                                                                                                                     <  1:955779/222‑1 (MQ=255)
                                                                                       cc‑cTTTGGCGTGTTGGGGATCGCTATTACTGCCTTTTGCGCCGT‑AAAAGTGTAAGGGTGGTTGTAGTGCCTCAACAAAATCAAACCACTCACCAGAAACCCGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATagtca                                                                                                                                                   <  1:231599/238‑1 (MQ=255)
                                                                                       aC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGG‑AATAGTGTAAGGGTGGTTGTAGTTCATCCACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCCCCGCCGTCGCCCGCGTCCACTGATTTACCGGAAATCGGACGGTTTTAAAGACCCCCCCCGCCAGCGCCCCGTCACTTAAAACAATCAATAGATCCC‑ACATTAGATCTCCGGGAACGGGGAATaatca                                                                                                                                                   >  1:172738/1‑239 (MQ=255)
                                                                                          cTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACCCCAGCGCCACGTAAGTTAAAAAAACCAATAAATCCC‑TAATAAAACCTCCGGGAAAGTGGAAAagtcagt                                                                                                                                                 >  1:392888/1‑239 (MQ=255)
                                                                                                    aTAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAGACAACTCACCAGACACACGCCCCCCATCGCCGCCGTCGCCAGCGCCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGACAGTCAAAACAATCAATAAATCCACAAATTAACTC‑CCGGGCACGGGGAAAAGTAACACttttttccg                                                                                                                                       >  1:508732/1‑235 (MQ=255)
                                                                                                    aTAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATTTCCGGGAACGTGGAATCGTCAGTCttttt                                                                                                                                           >  2:1064193/1‑235 (MQ=255)
                                                                                                    aTAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTcg                                                                                                                                       >  2:823165/1‑239 (MQ=255)
                                                                                                    aTAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAAATCTCCGGGAACGAGGAAAAGAAAGACTTTTTCAcg                                                                                                                                       >  1:549048/1‑239 (MQ=255)
                                                                                                    aTAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑AAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTTTcg                                                                                                                                       >  2:543921/1‑239 (MQ=255)
                                                                                                        ggttccttttCACCGCCGTTTGCGCGGT‑AAAAGGTTAAGGGTAGTTGTAGTTCCTCAACAAAATCAATCCTCTCCACAAAAACACGCCTCCCAGCGCCGCCGCCGCCAGCGCCCCCTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTcggcgg                                                                                                                                   <  1:167689/230‑1 (MQ=255)
                                                                                                         ggaacgctacactcgtttttGCGGGGTAAAAAGTG‑AAGGGTGGTTTGAGTTCCACAACAAAATCAAACCACTCACCAGAAACCCCCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTcggcgg                                                                                                                                   <  1:823165/222‑1 (MQ=255)
                                                                                                         gATCGCTATCACTGTCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTCGAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTcggcgg                                                                                                                                   <  2:1175754/238‑1 (MQ=255)
                                                                                                         gATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTcggcgg                                                                                                                                   <  2:1021825/238‑1 (MQ=255)
                                                                                                          aTCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGCAAGTTAAAACAATCACTACATCCA‑TAATTAGATCTCCCGGAACAGGGAAAAATAAGTCatttttcgcgcggcg                                                                                                                                 >  1:768444/1‑229 (MQ=255)
                                                                                                            cGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGACTGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGCCGGCGAg                                                                                                                               >  2:244570/1‑239 (MQ=255)
                                                                                                            cGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TACTTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAg                                                                                                                               >  2:966573/1‑239 (MQ=255)
                                                                                                                   aCTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCCCGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCCGTCTTTTTCTCGGCGGCGAGT‑TGATg                                                                                                                        >  2:1325603/1‑238 (MQ=255)
                                                                                                                       ccTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGGATAGTCAGACTTTTTCTCGGCGGCGGGT‑TGATGcccc                                                                                                                    >  2:707404/1‑238 (MQ=255)
                                                                                                                         ttttGCTCGGT‑AAAAGTGTAAGGGTGGTTGTAGATCATCAACAAAATCAAACCCCTCACCAGAAACACGCCTCCCAGCGCCGCCGGCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAACACCGCCCACGCCAGCGCCACGCAAGTTAAAACAATCAATAAGACCA‑TCATTACATCTCCGGGACACTGGAATAGACATCCTTTTTCTcgtacgagagttcaagccgcacc                                                                                                                  >  1:650571/1‑218 (MQ=255)
                                                                                                                         ttttGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAg                                                                                                                  >  2:1206006/1‑238 (MQ=255)
                                                                                                                         ttttGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGACTCCCGGGAACGTGGAAAAGCCAGCCTTTTTCTCGGGGGCGAGT‑TGAGGCCCAAGc                                                                                                                 >  1:821376/1‑239 (MQ=255)
                                                                                                                                   t‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAAtt                                                                                                        <  2:821376/238‑1 (MQ=255)
                                                                                                                                          tgtAAGTGTGGTTGGAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGTGAACGTGGaa                                                                                                                                                         <  2:156793/184‑1 (MQ=255)
                                                                                                                                              aGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAg                                                                                             >  2:440246/1‑239 (MQ=255)
                                                                                                                                              aGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAg                                                                                             >  2:1296131/1‑239 (MQ=255)
                                                                                                                                                    gtTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAAcaatcaa                                                                                                                                                                                           >  1:902094/1‑141 (MQ=255)
                                                                                                                                                    gtTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAAcaatcaa                                                                                                                                                                                           <  2:902094/141‑1 (MQ=255)
                                                                                                                                                    gtTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAACCGGGAAATTCGGCCGGAAAGTgcggc                                                                                       >  2:485011/1‑239 (MQ=255)
                                                                                                                                                    gtTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGCCAGCCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTgcggc                                                                                       >  2:1147062/1‑239 (MQ=255)
                                                                                                                                                    gtTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGAATTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGCAACGTGGAATAGACAGCCTTTTTCTCGGCGGCGAGA‑TTATGCTCCACACGGGAAATTCGGTCAAAAAGTggggg                                                                                       >  1:556777/1‑238 (MQ=255)
                                                                                                                                                             catcaACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGCTGGTCCACCCCGGAAATTCGGGCAGAAAGTGGGGGGATTTCCgg                                                                              >  1:127327/1‑239 (MQ=255)
                                                                                                                                                               tcaACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGGCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGACTTTTTCTCGGCGGCGAGT‑TTATGCTCCACCCCGGGAAATGGGTCAGAAAGGTCGGGGGTTTCggggg                                                                            >  1:1308846/1‑238 (MQ=255)
                                                                                                                                                                       aTCAAACCCCTCACAAGAAACAGGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCt                                                                    <  2:556777/239‑1 (MQ=255)
                                                                                                                                                                       aTCAAACCACCCACCAGAAACGCGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCt                                                                    <  2:1052834/239‑1 (MQ=255)
                                                                                                                                                                                cTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGTTCTCCGGGAACGTGGAATAGTAAGTCTTTTTCTCGGCGGCGGGTGTCTTGC‑CCAGCCGGGAAATTCGGGCGAAAAAGGCGGCGATTTGCGGGGCAGTGCCTTTTACCTgg                                                           >  1:982357/1‑238 (MQ=255)
                                                                                                                                                                                    ccAGAAACCCGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACg                                                       <  2:127327/239‑1 (MQ=255)
                                                                                                                                                                                    ccAGAAACACGCACCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGGCCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACg                                                       <  2:1154811/239‑1 (MQ=255)
                                                                                                                                                                                        aaaCACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGCGT‑TGATGCTCCAGCCGGGAAATTCGGGCAGAAAGTGCGGCGCTTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAAc                                                   >  2:751330/1‑239 (MQ=255)
                                                                                                                                                                                              gCCTCCCGGCGCCGACGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCAACGGCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGa                                             <  2:508732/239‑1 (MQ=255)
                                                                                                                                                                                              cccccccAGCGCCCCTGCCGCCACCGTCCCCTGATTTACCGGAATGCGGAAGATTTTAAAGCCCCCCCACGCCAGCGCCACGTAAGTTAAAACAATCAAGAGAGCCA‑TAATTAGATCGCCGGGCACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGa                                             <  1:190923/235‑1 (MQ=255)
                                                                                                                                                                                              cccccccAGCGCCCCCGTCCCCCGCGTCCCCTGGTGTGCCGGAATGAGGAAGATTTTAAAGACCGCCCACGCTGGCGCCACGTAAGTTAAAACAATCAATGGTACCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCCCGGCGGCGAGT‑TGAGGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGa                                             <  1:604893/235‑1 (MQ=255)
                                                                                                                                                                                               ccTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTTTCCTGCGACGCAAAAttgg                                              >  2:1029629/1‑234 (MQ=255)
                                                                                                                                                                                                   cccggcccgccgTCGCCCGCGGCCCCGTATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCCGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑GAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCa                                        <  1:1300528/233‑1 (MQ=255)
                                                                                                                                                                                                      ccccccccgTCCCCCGCCTCCCCTGATTTACCGGAATGGGGAAATTTTTAAAGACCGCCAACGCCAGCCCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATAc                                     <  1:1296131/233‑1 (MQ=255)
                                                                                                                                                                                                            cccgcGCCAGCTTCCCCTGATTTGCCGGATTGAGGAAGATTTTAAAGCCCGCCCACGCCAGCGCCACGATAGTTAAAACAATCAATAGGTCCA‑TAATTAGCTCTCCGGGAACGTGGAATAGTCAGTCTTTTCCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGc                               <  1:487281/235‑1 (MQ=255)
                                                                                                                                                                                                              gTCGACAGCGTCCACGGATTTCCCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGGGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCa                             <  2:635652/239‑1 (MQ=255)
                                                                                                                                                                                                                cccccgcgcccccgtaTTTTCCCGAATGGGGAAAATTTTAAAGACCGCCCAAGGCAGCGCCACGTGAGTTAAAACAATCAATAGATCCC‑TAATTAGATCGCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCACg                           <  1:1285879/224‑1 (MQ=255)
                                                                                                                                                                                                                cGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCACg                           <  2:1319237/239‑1 (MQ=255)
                                                                                                                                                                                                                  cccgggcccccgtaTTTCCCGGAATTTGGAAATTTTTAAAGCCCGCCCATGCCACCGCCGCACAAGTTAAAACAATCAATATATCCA‑TAATTCGATCTCCGGAACCGTGGAATAGTCAGTTTTTTTCTCGGCGGCGATT‑TGTGGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCTATTTCCGGGTCAGTCGCTTTCTCCTGCTACGCACCATGTGACTGCATACCCCATCCAAGCt                         <  1:707404/226‑1 (MQ=255)
                                                                                                                                                                                                                  cccgcgccccatGATTTACCGGATGGGGGGATATTGTAAAGACCGCCCGCGGCAGCGCAAGGTAAGTAAAAACAATCAATAGATCCA‑GAATTAGATCTCCGGGAACGGGCAATAGTCAGTCTTTTGCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAAGTCGGTCAGAAAGGGAGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCACGCt                         <  1:566609/228‑1 (MQ=255)
                                                                                                                                                                                                                  cccgCGTCCCCTTATTTACCGGAATTAGGAAGATTTAAAAGCCCGCCCGCGTCAGCACACCTTAAGTTAAAACAATCAATAGATCCA‑TAGTTAGATCTCCGGGAACGTGGAATAGTCAGGCTTTTGCGCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGAAGCATCATGTGACTGCATCCCCCAGCCACGCt                         <  1:1297104/236‑1 (MQ=255)
                                                                                                                                                                                                                  cccccctCCCCTGATTTTCCGGAAAGCGGAAAATTTTAAAGACCGCCCACGCCAGCGCCAAGGAAGTTAAAACAATCAATAGATCCC‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGGCTTTTTTCCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCACGCt                         <  1:924624/233‑1 (MQ=255)
                                                                                                                                                                                                                  ccagctgtccttGATTTTCGGGAATACGGAAGATTTTAAAGCCCCCCCACGCCACCGCCCGCTAAATTAAACACATTAATTGTCCCA‑TAATTAGACCTCGGGGAACGTGGAATAGTGAGTCTTTTTCTCGGCGGCGAGT‑TGCTGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCCGCCACGCt                         <  1:1206006/228‑1 (MQ=255)
                                                                                                                                                                                                                      cGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGACAGTCTTTTTCTCGCCGACGAGT‑TCATGCCCCCACCGGGAAATCCGGCCAGAAAGGGCGGCGGGTTCCGGGTCATACCCTTTCTCCTCCTCCGCAAAACGTGGCTGTAAACCCCAACCACGCTCCgg                     >  1:251696/1‑239 (MQ=255)
                                                                                                                                                                                                                       gTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCACGCTCCGGt                    <  2:715732/239‑1 (MQ=255)
                                                                                                                                                                                                                       gTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCACGCTCCGGt                    <  2:286799/239‑1 (MQ=255)
                                                                                                                                                                                                                       cctccatGATTTACCGGAATGCAGAAGATTTTAAAGACCGCCCAGCCCAGCGCCAAGTAAGTTAAAACAATCAATAGATCCA‑TAGTTAGATCTCCGGGAACGTGGAATAGTAAGTCTTTTTCGCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCACGCTcc                       <  1:966573/230‑1 (MQ=255)
                                                                                                                                                                                                                            cTGATTTACCGGAATGCGGAAGATTTTAAAGACCCCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGACCGTGGAATAGTCAGTCTTTTTCGCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGGTTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCACGCTCCGGTTGATa               <  2:104042/239‑1 (MQ=255)
                                                                                                                                                                                                                               aTTTACCGGAATGCGCAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCAGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCACGCCCCGGTTGTTaga             >  2:943258/1‑238 (MQ=255)
                                                                                                                                                                                                                                tttcccgtaaatcGGAAATTTTTAAAGCCCCCCCAGGCCAGGGCCAGTGAAGTTAAAACAATCAATTGACACA‑AAAGTAGTTCTCCGGGAACGGGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCACGCTCCGGTTGATagag            <  1:658713/226‑1 (MQ=255)
                                                                                                                                                                                                                                 tttccGGAATGCGGAAGATTTTAAAAATCACCCACACCAGGGCCCAGTAAGTTAAAACAATCAATAGATCCA‑TAAGTAAATCTCCGGGAACGGGGAATAGTCATTCTTTTTCGCGGCGGCGAGT‑TTGTGCTCCAGCCGGTAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCACGCTCCGGTTGACAGAGCg          <  1:218359/236‑1 (MQ=255)
                                                                                                                                                                                                                                 ttcccGGAATGCGGAAAATTTTAAAGCCCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCACGCTCCGGTTGATAGAGCg          <  2:640962/236‑1 (MQ=255)
                                                                                                                                                                                                                                       gAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCACGCTCCGGTTGGTAGAGCGTCGccc    >  2:1177960/1‑239 (MQ=255)
                                                                                                                                                                                                                                         aTGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCACGCTCCGGTTGATAGAGCGTCGCCCAg  >  2:658713/1‑239 (MQ=255)
                                                                                                                                                                                                                                         aTGCGGAAGAATTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGTTCCA‑GAATTAGGTCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCTGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCACGCTCCGGTTGATAGAGCGTCGCCCAg  <  2:707270/239‑1 (MQ=255)
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                        
AACGAACCGGGTCGAGCTTAAAAAGCACCTCGCCCTTTTGAATAAGCTGATTATTCTTGTCAGTGACTTCAGT‑AACAATTCCCGTCAC‑CTGTGGCGTGATAGGGATCGCTATCACTGCCTTTTGCGCGGT‑AAAAGTGTAAGGGTGGTTGTAGTTCATCAACAAAATCAAACCACTCACCAGAAACACGCCTCCCAGCGCCGCCGTCGCCAGCGTCCACTGATTTACCGGAATGCGGAAGATTTTAAAGACCGCCCACGCCAGCGCCACGTAAGTTAAAACAATCAATAGATCCA‑TAATTAGATCTCCGGGAACGTGGAATAGTCAGTCTTTTTCTCGGCGGCGAGT‑TGATGCTCCAGCCGGGAAATTCGGTCAGAAAGTGCGGCGATTTCCGGGTCAGTCGCTTTCTCCTGCGACGCAACATGTGACTGCATACCCCAGCCACGCTCCGGTTGATAGAGCGTCGCCCAG  >  NC_000913/3771084‑3771552

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A