mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 37,250 | A→C | 18.6% | V192G (GTG→GGG) | caiC ← | putative crotonobetaine/carnitine‑CoA ligase |
| RA | 37,255 | A→C | 17.3% | G190G (GGT→GGG) | caiC ← | putative crotonobetaine/carnitine‑CoA ligase |
| RA | 71,870 | A→G | 17.7% | S174G (AGC→GGC) | yabI → | DedA family inner membrane protein |
| RA | 82,217 | C→G | 9.4% | R438P (CGC→CCC) | leuA ← | 2‑isopropylmalate synthase |
| RA | 83,780 | C→A | 11.5% | intergenic (‑72/‑588) | leuL ← / → leuO | leu operon leader peptide/global transcription factor |
| RA | 86,765 | A→G | 10.9% | E379G (GAG→GGG) | ilvI → | acetolactate synthase 3 large subunit |
| RA | 86,769 | T→C | 6.7% | T380T (ACT→ACC) | ilvI → | acetolactate synthase 3 large subunit |
| RA | 99,078 | A→T | 12.6% | I226F (ATC→TTC) | ftsW → | putative lipid II flippase, integral membrane protein, FtsZ ring stabilizer |
| RA | 154,321 | A→C | 11.3% | V369G (GTC→GGC) | htrE ← | putative outer membrane usher protein |
| RA | 164,031 | T→G | 8.8% | W643G (TGG→GGG) | hrpB → | putative ATP‑dependent helicase |
| RA | 175,537 | T→G | 22.7% | V144G (GTG→GGG) | clcA → | H(+)/Cl(‑) exchange transporter |
| RA | 218,734 | T→G | 8.6% | T14T (ACA→ACC) | proS ← | prolyl‑tRNA synthetase |
| RA | 252,387 | G→A | 13.0% | K29K (AAG→AAA) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 319,100 | T→A | 5.0% | Y301F (TAC→TTC) | rclA ← | reactive chlorine stress species (RCS) resistance protein, pyridine nucleotide‑dependent disulfide oxidoreductase family |
| RA | 343,444 | A→G | 14.5% | G187G (GGA→GGG) | yahK → | broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing |
| RA | 345,302 | C→A | 17.2% | intergenic (+311/‑102) | yahL → / → yahM | uncharacterized protein/uncharacterized protein |
| RA | 361,668 | C→T | 17.0% | E65K (GAA→AAA) | lacA ← | thiogalactoside acetyltransferase |
| RA | 361,728 | C→T | 16.9% | E45K (GAA→AAA) | lacA ← | thiogalactoside acetyltransferase |
| RA | 388,772 | T→C | 10.2% | E319G (GAG→GGG) | hemB ← | 5‑aminolevulinate dehydratase (porphobilinogen synthase) |
| RA | 417,533 | T→G | 19.2% | V131G (GTG→GGG) | phoB → | response regulator in two‑component regulatory system with PhoR |
| RA | 429,830 | T→G | 19.0% | V109G (GTG→GGG) | secF → | SecYEG protein translocase auxillary subunit |
| RA | 433,649 | T→G | 39.7% | G65G (GGT→GGG) | ribD → | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| RA | 437,444 | A→C | 18.8% | V231G (GTG→GGG) | yajO ← | 2‑carboxybenzaldehyde reductase |
| RA | 442,372 | T→G | 12.6% | V275G (GTG→GGG) | thiI → | tRNA s(4)U8 sulfurtransferase |
| RA | 452,547 | G→C | 14.9% | G333G (GGC→GGG) | ampG ← | muropeptide transporter |
| RA | 454,195 | T→G | 12.0% | intergenic (‑28/‑277) | yajG ← / → bolA | putative lipoprotein/stationary‑phase morphogene, transcriptional repressor for mreB, also regulator for dacA, dacC, and ampC |
| RA | 465,928 | C→T | 4.9% | R462K (AGA→AAA) | ybaE ← | putative ABC transporter periplasmic binding protein |
| RA | 484,581 | A→C | 9.8% | W347G (TGG→GGG) | acrA ← | multidrug efflux system |
| RA | 538,368 | A→G | 13.6% | S246G (AGC→GGC) | ybbW → | putative allantoin transporter |
| RA | 540,577 | G→T | 15.1% | A5S (GCA→TCA) | ybbY → | putative uracil/xanthine transporter |
| RA | 569,209 | T→C | 3.6% | L103S (TTG→TCG) | ybcK → | DLP12 prophage, putative recombinase |
| RA | 649,330 | A→C | 11.5% | V81G (GTG→GGG) | citF ← | citrate lyase, citrate‑ACP transferase (alpha) subunit |
| RA | 665,104 | A→C | 18.9% | S29R (AGT→AGG) | rlpA ← | septal ring protein, suppressor of prc, minor lipoprotein |
| RA | 715,338 | T→A | 11.1% | intergenic (+140/‑74) | pgm → / → ybfP | phosphoglucomutase/lipoprotein |
| RA | 727,561 | A→C | 16.8% | V391G (GTG→GGG) | kdpA ← | potassium translocating ATPase, subunit A |
| RA | 759,427 | A→G | 13.9% | E241G (GAG→GGG) | sucA → | 2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
| RA | 770,523 | A→C | 11.0% | H849P (CAC→CCC) | mngB → | alpha‑mannosidase |
| RA | 783,293 | A→G | 16.1% | E43G (GAG→GGG) | pnuC → | nicotinamide riboside transporter |
| RA | 811,721 | T→G | 24.7% | V67G (GTG→GGG) | bioC → | malonyl‑ACP O‑methyltransferase, SAM‑dependent |
| RA | 825,248 | G→C | 20.2% | G287G (GGC→GGG) | ybhR ← | putative ABC transporter permease |
| RA | 846,304 | T→G | 11.6% | T54P (ACC→CCC) | glnQ ← | glutamine transporter subunit |
| RA | 861,108 | A→C | 16.7% | V500G (GTG→GGG) | ybiW ← | putative pyruvate formate lyase |
| RA | 871,360 | A→G | 17.9% | S132G (AGT→GGT) | gsiC → | glutathione ABC transporter permease |
| RA | 909,181 | A→G | 13.9% | A38A (GCT→GCC) | ltaE ← | L‑allo‑threonine aldolase, PLP‑dependent |
| RA | 956,640 | A→C | 15.8% | intergenic (‑8/‑122) | ycaO ← / → ycaP | ribosomal protein S12 methylthiotransferase accessory factor/UPF0702 family putative inner membrane protein |
| RA | 973,698 | A→G | 14.8% | G54G (GGA→GGG) | smtA → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| RA | 1,058,486 | T→C | 21.7% | S135P (TCG→CCG) | torC → | trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit |
| RA | 1,069,065 | G→A | 14.7% | L259L (CTG→TTG) | rutG ← | pyrimidine permease |
| RA | 1,123,777 | A→C | 12.4% | V93G (GTC→GGC) | grxB ← | glutaredoxin 2 (Grx2) |
| RA | 1,137,894 | T→C | 16.0% | L175P (CTC→CCC) | flgJ → | flagellar rod assembly protein and murein hydrolase, flagellum‑specific muramidase |
| RA | 1,158,048 | A→C | 20.7% | P60P (CCA→CCC) | ptsG → | fused glucose‑specific PTS enzymes: IIB component/IIC component |
| RA | 1,196,305 | C→T | 89.0% | R395C (CGT→TGT) | icd → | isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase |
| RA | 1,263,180 | G→T | 19.3% | D107E (GAC→GAA) | lolB ← | lipoprotein localization factor |
| RA | 1,271,857 | A→T | 16.5% | intergenic (‑8/‑262) | chaA ← / → chaB | calcium/sodium:proton antiporter/cation transport regulator |
| RA | 1,272,501 | T→G | 16.1% | intergenic (+152/‑6) | chaB → / → chaC | cation transport regulator/cation transport regulator |
| RA | 1,357,427 | T→C | 9.2% | E81G (GAG→GGG) | ymjA ← | DUF2543 family protein |
| RA | 1,383,219 | A→C | 12.4% | V248G (GTG→GGG) | ycjW ← | LacI family putative transcriptional repressor |
| RA | 1,383,718 | C→A | 19.6% | E82* (GAA→TAA) | ycjW ← | LacI family putative transcriptional repressor |
| RA | 1,404,865 | A→G | 16.1% | E42G (GAG→GGG) | abgR → | putative DNA‑binding transcriptional regulator of abgABT operon |
| RA | 1,435,725 | C→A | 18.0% | intergenic (‑106/+35) | uspF ← / ← ompN | stress‑induced protein, ATP‑binding protein/outer membrane pore protein N, non‑specific |
| RA | 1,464,046 | G→T | 12.8% | E170* (GAA→TAA) | paaX → | transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl‑CoA inducer |
| RA | 1,466,210 | G→A | 6.8% | pseudogene (819/2513 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,473,746 | T→G | 21.5% | pseudogene (3230/3497 nt) | ydbA → | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| RA | 1,477,207 | A→C | 16.4% | A688A (GCA→GCC) | ydbD → | PF10971 family putative periplasmic methylglyoxal resistance protein |
| RA | 1,503,645 | Δ1 bp | 3.6% | pseudogene (5/432 nt) | insP ← | pseudogene, IS609 transposase A,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related |
| RA | 1,520,062 | T→A | 15.5% | *346K (TAA→AAA) | curA → | curcumin/dihydrocurcumin reductase, NADPH‑dependent |
| RA | 1,589,069 | C→T | 23.4% | pseudogene (1011/1227 nt) | ydeT ← | pseudogene, putative outer membrane protein |
| RA | 1,616,835 | T→A | 16.5% | I358K (ATA→AAA) | yneK → | uncharacterized protein |
| RA | 1,639,706 | A→C | 12.5% | C118G (TGT→GGT) | rrrQ ← | Qin prophage, putative lysozyme |
| RA | 1,744,088 | A→T | 12.6% | Y211F (TAC→TTC) | mdtK → | multidrug efflux system transporter |
| RA | 1,827,565 | A→C | 11.8% | V232G (GTG→GGG) | astB ← | succinylarginine dihydrolase |
| RA | 1,872,402 | T→G | 12.0% | V121G (GTG→GGG) | yeaJ → | putative diguanylate cyclase |
| RA | 1,912,136 | A→C | 19.5% | G147G (GGT→GGG) | htpX ← | putative endopeptidase |
| RA | 1,915,574 | G→A | 4.8% | intergenic (‑40/+57) | proQ ← / ← msrC | RNA chaperone, putative ProP translation regulator/free methionine‑(R)‑sulfoxide reductase |
| RA | 1,921,260 | T→G | 12.2% | G346G (GGT→GGG) | rsmF → | 16S rRNA m(5)C1407 methyltransferase, SAM‑dependent |
| RA | 1,923,359 | A→T | 9.6% | intergenic (+45/+6) | ryeA → / ← yebY | novel sRNA, function unknown/DUF2511 family protein |
| RA | 1,976,685 | T→C | 15.9% | E152G (GAG→GGG) | motA ← | proton conductor component of flagella motor |
| RA | 2,054,696 | C→T | 5.9% | L352L (CTG→TTG) | shiA → | shikimate transporter |
| RA | 2,064,843 | A→C | 12.6% | V127G (GTG→GGG) | cobS ← | cobalamin synthase |
| RA | 2,074,021 | A→C | 13.3% | Y828S (TAC→TCC) | flu → | CP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| RA | 2,077,484 | T→C | 11.0% | intergenic (+4/‑85) | cbeA → / → cbtA | CP4‑44 prophage, cytoskeleton bundling‑enhancing factor A, CbtA antitoxin/CP4‑44 prophage, toxin of the YeeV‑YeeU toxin‑antitoxin system |
| RA | 2,120,560 | A→C | 10.8% | V332G (GTG→GGG) | wcaJ ← | colanic biosynthesis UDP‑glucose lipid carrier transferase |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,145,868 | A→G | 10.6% | E868G (GAG→GGG) | yegE → | putative diguanylate cyclase |
| RA | 2,193,508 | A→C | 9.9% | V220G (GTG→GGG) | mrp ← | antiporter inner membrane protein |
| RA | 2,219,304 | A→C | 15.5% | V59G (GTG→GGG) | osmF ← | putative ABC transporter periplasmic binding protein |
| RA | 2,235,396 | T→G | 23.1% | V45G (GTG→GGG) | preA → | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C |
| RA | 2,274,347 | T→G | 24.0% | G57G (GGT→GGG) | yejB → | microcin C ABC transporter permease |
| RA | 2,331,257 | A→C | 11.1% | pseudogene (3144/4605 nt) | yfaS ← | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family, putative membrane protein |
| RA | 2,349,403 | T→C | 8.6% | E23G (GAG→GGG) | inaA ← | acid‑inducible Kdo/WaaP family putative kinase |
| RA | 2,459,223 | T→C | 25.4% | G415G (GGA→GGG) | fadI ← | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit |
| RA | 2,504,890 | A→C | 16.7% | V219G (GTG→GGG) | ypdE ← | aminopeptidase |
| RA | 2,513,127 | A→T | 9.1% | I30F (ATC→TTC) | nupC → | nucleoside (except guanosine) transporter |
| RA | 2,541,268 | T→C | 18.2% | E137G (GAG→GGG) | cysW ← | sulfate/thiosulfate ABC transporter permease |
| RA | 2,623,865 | T→G | 11.6% | V275G (GTG→GGG) | ppk → | polyphosphate kinase, component of RNA degradosome |
| RA | 2,625,567 | T→G | 11.9% | V152G (GTG→GGG) | ppx → | exopolyphosphatase |
| RA | 2,649,242 | A→C | 18.6% | V1015G (GTG→GGG) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM, anti‑host protease defense factor, periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,704,839 | T→G | 11.6% | T157P (ACT→CCT) | lepB ← | leader peptidase (signal peptidase I) |
| RA | 2,707,558 | Δ1 bp | 100% | coding (242/480 nt) | rseC ← | SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,712,526 | A→C | 10.0% | S79R (AGT→AGG) | trmN ← | tRNA1(Val) (adenine(37)‑N6)‑methyltransferase |
| RA | 2,739,682 | T→C | 13.9% | E129G (GAG→GGG) | tyrA ← | fused chorismate mutase T/prephenate dehydrogenase |
| RA | 2,745,087 | A→C | 10.0% | V84G (GTG→GGG) | trmD ← | tRNA m(1)G37 methyltransferase, SAM‑dependent |
| RA | 2,777,457 | A→C | 15.3% | T3P (ACT→CCT) | ypjF → | CP4‑57 prophage, toxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,872,178 | A→C | 13.6% | V104G (GTG→GGG) | ispD ← | 4‑diphosphocytidyl‑2C‑methyl‑D‑erythritol synthase |
| RA | 2,877,025 | T→G | 16.8% | G149G (GGT→GGG) | iap → | aminopeptidase in alkaline phosphatase isozyme conversion |
| RA | 2,909,227 | A→C | 13.1% | G146G (GGT→GGG) | pyrG ← | CTP synthetase |
| RA | 2,913,657 | T→C | 12.7% | intergenic (‑8/+40) | relA ← / ← rlmD | (p)ppGpp synthetase I/GTP pyrophosphokinase/23S rRNA m(5)U1939 methyltransferase, SAM‑dependent |
| RA | 2,944,709 | A→G | 11.4% | E57G (GAG→GGG) | csdE → | CsdA‑binding activator, Fe‑S protein |
| RA | 2,947,215 | G→A | 11.7% | intergenic (‑39/‑170) | mltA ← / → metZ | membrane‑bound lytic murein transglycosylase A/tRNA‑Met |
| RA | 2,952,348 | C→G | 12.3% | A38P (GCG→CCG) | recD ← | exonuclease V (RecBCD complex), alpha chain |
| RA | 2,967,843 | A→C | 17.8% | V197G (GTG→GGG) | ptsP ← | PEP‑protein phosphotransferase enzyme I, GAF domain containing protein |
| RA | 3,017,755 | T→G | 14.8% | G566G (GGT→GGG) | ygfK → | putative Fe‑S subunit oxidoreductase subunit |
| RA | 3,051,837 | A→C | 12.3% | V160G (GTG→GGG) | ubiI ← | 2‑octaprenylphenol hydroxylase, FAD‑dependent |
| RA | 3,053,470 | G→C | 16.9% | A16G (GCG→GGG) | ubiH ← | 2‑octaprenyl‑6‑methoxyphenol hydroxylase, FAD/NAD(P)‑binding |
| RA | 3,062,716 | A→C | 14.2% | T623T (ACA→ACC) | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,074,200 | T→C | 12.0% | E163G (GAG→GGG) | yggC ← | putative PanK family P‑loop kinase |
| RA | 3,090,487 | G→T | 11.6% | C48F (TGC→TTC) | endA → | DNA‑specific endonuclease I |
| RA | 3,135,444 | G→T | 11.2% | A309E (GCA→GAA) | pitB ← | phosphate transporter |
| RA | 3,140,309 | T→C | 13.3% | E3G (GAG→GGG) *163W (TGA→TGG) |
hybF ← hybE ← |
protein involved with the maturation of hydrogenases 1 and 2 hydrogenase 2‑specific chaperone |
| RA | 3,141,135 | G→C | 15.2% | G50G (GGC→GGG) | hybD ← | maturation protease for hydrogenase 2 |
| JC | 3,149,291:1 | (CCA)2→3 | 4.2% | coding (179/495 nt) | yqhA ← | UPF0114 family putative inner membrane protein |
| RA | 3,206,436 | G→A | 17.6% | intergenic (‑182/‑25) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,450 | C→A | 16.3% | intergenic (‑196/‑11) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,469 | C→G | 16.1% | S3R (AGC→AGG) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,475 | T→A | 16.5% | S5R (AGT→AGA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,481 | G→A | 16.4% | K7K (AAG→AAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,504 | C→A | 16.5% | T15K (ACA→AAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,209,178 | T→G | 13.9% | V386G (GTG→GGG) | ttdT → | L‑tartrate/succinate antiporte |
| RA | 3,209,978 | A→G | 20.4% | A188A (GCT→GCC) | tsaD ← | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein, glycation binding protein |
| RA | 3,218,574 | T→C | 14.2% | G167G (GGA→GGG) | aer ← | fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component |
| RA | 3,263,923 | T→G | 11.7% | T365P (ACT→CCT) | tdcC ← | L‑threonine/L‑serine transporter |
| RA | 3,265,358 | T→C | 18.5% | G223G (GGA→GGG) | tdcB ← | L‑threonine dehydratase, catabolic |
| RA | 3,282,197 | T→C | 13.4% | L75P (CTC→CCC) | agaS → | tagatose‑6‑phosphate ketose/aldose isomerase |
| RA | 3,289,076 | C→A | 15.5% | Q89K (CAG→AAG) | yraJ → | putative outer membrane protein |
| RA | 3,308,006 | C→A | 9.8% | intergenic (‑75/+32) | yrbN ← / ← nlpI | uncharacterized protein/lipoprotein involved in osmotic sensitivity and filamentation |
| RA | 3,317,601 | A→C | 12.3% | V135G (GTG→GGG) | rimP ← | ribosome maturation factor for 30S subunits |
| RA | 3,319,871 | A→C | 10.4% | T413P (ACT→CCT) | argG → | argininosuccinate synthetase |
| RA | 3,332,559 | T→C | 17.2% | R59G (AGG→GGG) | yhbE ← | EamA family inner membrane putative transporter |
| RA | 3,338,867 | T→C | 12.5% | E127G (GAG→GGG) | mlaE ← | ABC transporter maintaining OM lipid asymmetry, inner membrane permease protein |
| RA | 3,340,103 | G→C | 11.0% | intergenic (‑40/‑170) | mlaF ← / → yrbG | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein/putative calcium/sodium:proton antiporter |
| RA | 3,344,982 | A→C | 15.0% | T90P (ACC→CCC) | rpoN → | RNA polymerase, sigma 54 (sigma N) factor |
| RA | 3,364,405 | C→A | 11.6% | S534* (TCA→TAA) | yhcD → | putative outer membrane fimbrial subunit usher protein |
| RA | 3,395,439 | T→C | 11.8% | E273G (GAG→GGG) | yhdP ← | DUF3971‑AsmA2 domains protein |
| RA | 3,405,779 | T→G | 12.9% | C116G (TGC→GGC) | accB → | acetyl CoA carboxylase, BCCP subunit |
| RA | 3,416,432 | C→T | 16.1% | R468C (CGC→TGC) | acrF → | multidrug efflux system protein |
| RA | 3,417,904 | T→G | 12.4% | G958G (GGT→GGG) | acrF → | multidrug efflux system protein |
| RA | 3,428,569 | T→C | 11.5% | noncoding (192/1542 nt) | rrsD ← | 16S ribosomal RNA of rrnD operon |
| RA | 3,438,595 | G→T | 6.1% | A18E (GCA→GAA) | arfA ← | alternate ribosome‑rescue factor A |
| RA | 3,439,037 | A→C | 12.1% | V31G (GTG→GGG) | zntR ← | zntA gene transcriptional activator |
| RA | 3,460,785 | T→C | 17.4% | F324S (TTC→TCC) | gspF → | general secretory pathway component, cryptic |
| RA | 3,473,919 | G→A | 9.2% | S54F (TCT→TTT) | rpsG ← | 30S ribosomal subunit protein S7 |
| RA | 3,479,970 | G→C | 13.5% | G212G (GGC→GGG) | kefB ← | potassium:proton antiporter |
| RA | 3,480,294 | T→C | 20.3% | G104G (GGA→GGG) | kefB ← | potassium:proton antiporter |
| RA | 3,492,827 | G→T | 13.2% | A88S (GCC→TCC) | tsgA → | putative transporter |
| RA | 3,499,607 | A→C | 17.1% | A54A (GCA→GCC) | yhfL → | small lipoprotein |
| RA | 3,499,649 | G→T | 24.0% | intergenic (+36/‑259) | yhfL → / → frlA | small lipoprotein/putative fructoselysine transporter |
| RA | 3,499,692 | G→T | 13.4% | intergenic (+79/‑216) | yhfL → / → frlA | small lipoprotein/putative fructoselysine transporter |
| RA | 3,499,701 | G→T | 11.4% | intergenic (+88/‑207) | yhfL → / → frlA | small lipoprotein/putative fructoselysine transporter |
| RA | 3,520,595 | A→C | 8.8% | V36G (GTG→GGG) | hofQ ← | DNA catabolic putative fimbrial transporter |
| RA | 3,522,373 | A→G | 14.5% | L126P (CTC→CCC) | hofM ← | DNA catabolic putative pilus assembly protein |
| RA | 3,532,593 | C→A | 13.8% | intergenic (‑156/‑223) | yhgE ← / → pck | DUF4153 family putative inner membrane protein/phosphoenolpyruvate carboxykinase [ATP] |
| RA | 3,536,133 | G→C | 23.1% | R150R (CGC→CGG) | ompR ← | response regulator in two‑component regulatory system with EnvZ |
| RA | 3,551,915 | A→C | 15.9% | V186G (GTG→GGG) | malP ← | maltodextrin phosphorylase |
| RA | 3,553,283 | T→G | 17.0% | G67G (GGT→GGG) | malT → | mal regulon transcriptional activator |
| RA | 3,590,223 | T→G | 13.2% | T230P (ACC→CCC) | ugpA ← | sn‑glycerol‑3‑phosphate ABC transporter permease |
| RA | 3,592,949 | T→C | 4.4% | E163G (GAG→GGG) | livF ← | branched‑chain amino acid ABC transporter ATPase |
| RA | 3,622,502 | T→G | 14.9% | S1104R (AGT→AGG) | rhsB → | Rhs protein with DUF4329 family putative toxin domain, putative neighboring cell growth inhibitor |
| RA | 3,638,184 | A→G | 17.2% | S182G (AGC→GGC) | pitA → | phosphate transporter, low‑affinity, tellurite importer |
| RA | 3,638,227 | A→G | 17.6% | E196G (GAG→GGG) | pitA → | phosphate transporter, low‑affinity, tellurite importer |
| RA | 3,640,983 | C→T | 14.7% | F41F (TTC→TTT) | dtpB → | dipeptide and tripeptide permease B |
| RA | 3,665,587 | C→A | 9.3% | A75S (GCA→TCA) | gadX ← | acid resistance regulon transcriptional activator, autoactivator |
| RA | 3,672,788 | A→G | 6.3% | S126G (AGT→GGT) | yhjC → | LysR family putative transcriptional regulator |
| RA | 3,673,736 | A→C | 19.5% | T126P (ACC→CCC) | yhjD → | inner membrane putative BrbK family alternate lipid exporter |
| RA | 3,674,171 | A→T | 6.4% | I271F (ATT→TTT) | yhjD → | inner membrane putative BrbK family alternate lipid exporter |
| RA | 3,686,538 | T→C | 15.2% | S879G (AGC→GGC) | bcsC ← | cellulose synthase subunit |
| RA | 3,699,211 | G→T | 14.7% | L333F (TTG→TTT) | bcsG → | DUF3260 family cellulose production inner membrane protein |
| RA | 3,731,743 | T→A | 11.9% | L205Q (CTA→CAA) | xylF → | D‑xylose transporter subunit |
| RA | 3,741,499 | T→C | 8.5% | E28G (GAG→GGG) | ysaA ← | putative hydrogenase, 4Fe‑4S ferredoxin‑type component |
| RA | 3,749,428 | T→G | 19.7% | G66G (GGT→GGG) | sgbU → | putative L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 3,762,268 | T→G | 22.8% | G29G (GGT→GGG) | rhsA → | Rhs protein with putative toxin 55 domain, putative polysaccharide synthesis/export protein, putative neighboring cell growth inhibitor |
| RA | 3,765,493 | T→G | 20.9% | S1104R (AGT→AGG) | rhsA → | Rhs protein with putative toxin 55 domain, putative polysaccharide synthesis/export protein, putative neighboring cell growth inhibitor |
| RA | 3,771,322 | G→A | 10.7% | I19I (ATC→ATT) | yibH ← | putative membrane fusion protein (MFP) component of efflux pump |
| RA | 3,777,790 | A→G | 9.8% | G131G (GGA→GGG) | lldP → | L‑lactate permease |
| RA | 3,784,899 | A→C | 13.3% | V39G (GTG→GGG) | yibN ← | putative rhodanese‑related sulfurtransferase |
| MC JC | 3,815,858 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,840,797 | G→A | 9.2% | I314I (ATC→ATT) | nepI ← | putative transporter |
| RA | 3,852,083 | T→C | 10.2% | E234G (GAG→GGG) | ilvB ← | acetolactate synthase 2 large subunit |
| RA | 3,854,897 | A→G | 18.4% | E326G (GAG→GGG) | emrD → | multidrug efflux system protein |
| RA | 3,862,661 | T→G | 30.2% | pseudogene (942/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,673 | C→A | 30.8% | pseudogene (930/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,862,676 | G→C | 32.7% | pseudogene (927/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| RA | 3,880,847 | A→G | 9.6% | L125P (CTC→CCC) | recF ← | gap repair protein |
| RA | 3,901,864 | A→C | 9.8% | V119G (GTG→GGG) | bglH ← | carbohydrate‑specific outer membrane porin, cryptic |
| RA | 3,915,874 | A→C | 9.9% | L33R (CTG→CGG) | atpC ← | F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,932,711 | A→G | 11.2% | E466G (GAG→GGG) | kup → | potassium transporter |
| RA | 3,943,487 | T→G | 13.1% | noncoding (54/76 nt) | gltU → | tRNA‑Glu |
| RA | 3,956,960 | T→C | 8.9% | E287G (GAG→GGG) | ilvY ← | transcriptional activator of ilvC, autorepressor |
| RA | 3,975,376 | A→G | 22.4% | S78G (AGC→GGC) | wecE → | TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase |
| RA | 3,975,382 | A→C | 17.4% | T80P (ACC→CCC) | wecE → | TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase |
| RA | 3,977,198 | A→G | 16.5% | S308G (AGT→GGT) | wzxE → | O‑antigen translocase |
| RA | 3,981,334 | A→G | 13.9% | E150G (GAG→GGG) | yifK → | putative APC family amino acid transporter |
| RA | 3,991,072:1 | +G | 2.6% | intergenic (‑307/‑80) | hemC ← / → cyaA | hydroxymethylbilane synthase/adenylate cyclase |
| JC | 4,001,644 | Δ5 bp | 96.4% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,013,576 | T→G | 11.7% | G175G (GGT→GGG) | metE → | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase |
| RA | 4,043,013 | A→G | 13.6% | G200G (GGA→GGG) | srkA → | Cpx stress response Thr/Ser protein kinase, MazF antagonist protein |
| RA | 4,045,671 | A→C | 7.9% | *311E (TAA→GAA) | yihG ← | inner membrane protein, inner membrane acyltransferase |
| RA | 4,046,373 | G→A | 9.3% | L77L (CTG→TTG) | yihG ← | inner membrane protein, inner membrane acyltransferase |
| RA | 4,062,374 | T→G | 8.1% | G43G (GGT→GGG) | yihN → | MFS transporter family protein |
| RA | 4,062,444 | G→T | 6.6% | A67S (GCC→TCC) | yihN → | MFS transporter family protein |
| RA | 4,065,547 | T→A | 13.9% | L73F (TTA→TTT) | yihO ← | putative sulphoquinovose importer |
| RA | 4,065,570 | T→A | 16.4% | T66S (ACC→TCC) | yihO ← | putative sulphoquinovose importer |
| RA | 4,065,595 | C→A | 15.1% | L57L (CTG→CTT) | yihO ← | putative sulphoquinovose importer |
| RA | 4,072,424 | T→C | 7.8% | E76G (GAG→GGG) | yihT ← | 6‑deoxy‑6‑sulphofructose‑1‑phosphate aldolase |
| RA | 4,101,254 | C→T | 9.5% | S149F (TCT→TTT) | sodA → | superoxide dismutase, Mn |
| RA | 4,103,630 | T→C | 9.4% | I449V (ATT→GTT) | cpxA ← | sensory histidine kinase in two‑component regulatory system with CpxR |
| RA | 4,103,632 | A→C | 15.1% | V448G (GTG→GGG) | cpxA ← | sensory histidine kinase in two‑component regulatory system with CpxR |
| RA | 4,107,591 | C→G | 7.9% | A14G (GCG→GGG) | pfkA → | 6‑phosphofructokinase I |
| RA | 4,135,881 | T→G | 10.9% | V683G (GTG→GGG) | katG → | catalase‑peroxidase HPI, heme b‑containing |
| RA | 4,136,803 | A→G | 15.2% | S233G (AGC→GGC) | yijE → | EamA‑like transporter family protein |
| RA | 4,140,197 | T→G | 14.8% | H675P (CAC→CCC) | frwA ← | putative PTS enzyme: Hpr, enzyme I and II components |
| RA | 4,143,497 | A→G | 14.8% | G323G (GGA→GGG) | frwC → | putative enzyme IIC component of PTS |
| RA | 4,158,652 | T→G | 11.0% | V55G (GTG→GGG) | oxyR → | oxidative and nitrosative stress transcriptional regulator |
| RA | 4,184,542 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,192,033 | A→C | 17.9% | V201G (GTG→GGG) | thiG ← | thiamine biosynthesis ThiGH complex subunit |
| RA | 4,201,277 | A→C | 19.0% | G137G (GGT→GGG) | zraP ← | Zn‑dependent periplasmic chaperone |
| RA | 4,217,718 | T→G | 11.0% | V204G (GTG→GGG) | aceA → | isocitrate lyase |
| RA | 4,217,811 | C→G | 4.5% | A235G (GCT→GGT) | aceA → | isocitrate lyase |
| RA | 4,219,538 | C→T | 16.6% | A315V (GCG→GTG) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,241,926 | T→A | 9.5% | T110S (ACC→TCC) | xylE ← | D‑xylose transporter |
| RA | 4,241,997 | T→C | 15.1% | D86G (GAT→GGT) | xylE ← | D‑xylose transporter |
| RA | 4,253,208 | T→G | 11.8% | V65G (GTG→GGG) | ubiA → | p‑hydroxybenzoate octaprenyltransferase |
| RA | 4,279,724 | T→G | 6.4% | V416G (GTG→GGG) | ghxP → | guanine/hypoxanthine permease, high affinity, guanine/hypoxanthine:H+ symporter |
| RA | 4,280,456 | C→T | 12.7% | L160L (CTG→TTG) | yjcE → | putative cation/proton antiporter |
| RA | 4,287,459 | C→A | 6.7% | intergenic (‑89/‑304) | acs ← / → nrfA | acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome |
| RA | 4,295,699 | T→G | 18.6% | V407G (GTG→GGG) | gltP → | glutamate/aspartate:proton symporter |
| RA | 4,300,841 | A→G | 6.9% | L64P (CTC→CCC) | mdtP ← | outer membrane factor of efflux pump |
| RA | 4,313,537 | A→G | 9.7% | I63V (ATT→GTT) | rpiB → | ribose 5‑phosphate isomerase B/allose 6‑phosphate isomerase |
| RA | 4,317,499 | A→G | 15.7% | L133P (CTC→CCC) | phnL ← | ribophosphonate triphosphate synthase subunit, putative ABC transporter‑related ATPase |
| RA | 4,319,405 | A→C | 11.5% | V68G (GTG→GGG) | phnJ ← | carbon‑phosphorus lyase, SAM‑dependent |
| RA | 4,327,764 | A→G | 8.8% | E210G (GAG→GGG) | crfC → | clamp‑binding sister replication fork colocalization protein, dynamin‑related |
| RA | 4,359,236 | A→G | 9.4% | L266P (CTC→CCC) | cadB ← | putative lysine/cadaverine transporter |
| RA | 4,368,876 | A→G | 19.7% | E71G (GAG→GGG) | fxsA → | suppressor of F exclusion of phage T7 |
| RA | 4,368,889 | T→G | 17.3% | S75R (AGT→AGG) | fxsA → | suppressor of F exclusion of phage T7 |
| RA | 4,368,899 | A→G | 13.7% | I79V (ATC→GTC) | fxsA → | suppressor of F exclusion of phage T7 |
| RA | 4,368,938 | A→T | 11.3% | T92S (ACC→TCC) | fxsA → | suppressor of F exclusion of phage T7 |
| RA | 4,378,929 | A→G | 19.8% | L6P (CTC→CCC) | ampC ← | penicillin‑binding protein, beta‑lactamase, intrinsically weak |
| JC | 4,381,476 | Δ3 bp | 2.6% | coding (842‑844/1809 nt) | frdA ← | anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit |
| RA | 4,401,810 | A→G | 9.4% | R380G (AGA→GGA) | hflX → | GTPase, stimulated by 50S subunit binding, Mn(2+) homeostasis regulator |
| RA | 4,402,980 | Δ1 bp | 3.0% | coding (942/1260 nt) | hflK → | modulator for HflB protease specific for phage lambda cII repressor |
| RA | 4,403,906 | T→G | 16.1% | G202G (GGT→GGG) | hflC → | HflB protease modulator specific for phage lambda cII repressor |
| RA | 4,424,137 | T→G | 14.6% | V146G (GTG→GGG) | ulaF → | L‑ribulose 5‑phosphate 4‑epimerase |
| RA | 4,425,175 | G→A | 2.8% | P19P (CCG→CCA) | rpsF → | 30S ribosomal subunit protein S6 |
| RA | 4,429,998 | C→T | 17.3% | S45F (TCT→TTT) | cycA → | D‑alanine/D‑serine/glycine transporter |
| RA | 4,444,675 | T→G | 13.5% | V188G (GTG→GGG) | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
| RA | 4,455,886 | T→G | 13.4% | V34G (GTG→GGG) | mpl → | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| RA | 4,459,472 | T→G | 11.6% | intergenic (+160/‑19) | pmbA → / → cybC | putative antibiotic peptide MccB17 maturation peptidase/pseudogene, truncated cytochrome b562, cytochrome b(562) |
| RA | 4,463,824 | T→G | 8.7% | D296A (GAC→GCC) | treC ← | trehalose‑6‑P hydrolase |
| RA | 4,463,875 | T→G | 11.3% | H279P (CAC→CCC) | treC ← | trehalose‑6‑P hydrolase |
| RA | 4,464,860 | A→C | 10.2% | V441G (GTG→GGG) | treB ← | trehalose‑specific PTS enzyme: IIB and IIC component |
| RA | 4,480,112 | C→T | 10.4% | L128F (CTC→TTC) | yjgN → | DUF898 family inner membrane protein |
| RA | 4,487,251 | C→T | 12.6% | L345F (CTC→TTC) | lptF → | lipopolysaccharide export ABC permease |
| RA | 4,489,889 | A→C | 11.6% | V59G (GTG→GGG) | yjgR ← | DUF853 family protein with NTPase fold |
| RA | 4,502,618 | A→C | 10.6% | V272G (GTG→GGG) | insG ← | IS4 transposase |
| RA | 4,534,597 | G→A | 13.0% | pseudogene (80/246 nt) | yjhZ ← | pseudogene, rimK paralog, C‑terminal fragment |
| RA | 4,542,224 | C→T | 13.1% | R63C (CGC→TGC) | fimE → | tyrosine recombinase/inversion of on/off regulator of fimA |
| RA | 4,563,969 | G→T | 12.3% | A241E (GCA→GAA) | yjiL ← | putative ATPase, activator of (R)‑hydroxyglutaryl‑CoA dehydratase |
| RA | 4,587,543 | A→G | 13.0% | G198G (GGA→GGG) | mrr → | methylated adenine and cytosine restriction protein |
| RA | 4,588,080 | A→C | 16.0% | W263G (TGG→GGG) | yjiA ← | metal‑binding GTPase |
| RA | 4,593,918 | Δ1 bp | 3.1% | coding (806/1362 nt) | lgoT ← | putative L‑galactonate:H+ symporter |
| RA | 4,596,353 | T→G | 18.9% | S121R (AGT→AGG) | lgoD → | L‑galactonate oxidoreductase, L‑gulonate oxidoreductase |
| RA | 4,601,682 | T→A | 11.1% | L139F (TTA→TTT) | yjjB ← | DUF3815 family inner membrane protein |
| RA | 4,625,086 | T→G | 12.7% | V64G (GTG→GGG) | serB → | 3‑phosphoserine phosphatase |
| RA | 4,631,506 | A→G | 10.6% | E258G (GAG→GGG) | slt → | lytic murein transglycosylase, soluble |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 299949 | 300198 | 250 | 27 [26] | [24] 27 | paoC | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| * | * | ÷ | NC_000913 | 583141 | 583757 | 617 | 27 [26] | [26] 27 | [appY] | [appY] |
| * | * | ÷ | NC_000913 | 1212024 | 1212575 | 552 | 38 [26] | [21] 30 | iraM/ycgX | RpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein |
| * | * | ÷ | NC_000913 | 1812686 | 1812984 | 299 | 27 [23] | [25] 27 | ydjO | uncharacterized protein |
| * | * | ÷ | NC_000913 | 1978495 | 1979278 | 784 | 27 [26] | [6] 29 | insB1–insA | insB1, insA |
| * | * | ÷ | NC_000913 | 2455622 | 2456120 | 499 | 27 [26] | [19] 27 | [yfcV] | [yfcV] |
| * | * | ÷ | NC_000913 | 2469137 | 2469788 | 652 | 37 [23] | [26] 28 | gtrS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| * | * | ÷ | NC_000913 | 3653651 | 3653938 | 288 | 27 [25] | [26] 29 | [yhiS] | [yhiS] |
| * | * | ÷ | NC_000913 | 3798957 | 3799506 | 550 | 28 [26] | [13] 27 | [waaU]–[waaZ] | [waaU], [waaZ] |
| * | * | ÷ | NC_000913 | 4233760 | 4235474 | 1715 | 27 [26] | [26] 27 | [pgi] | [pgi] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 236931 = | 108 (1.030) | 80 (0.970) +45 bp |
4/342 | NT | 46.6% | noncoding (1/77 nt) | aspV | tRNA‑Asp |
| ? | NC_000913 | 2726060 = | 124 (1.180) | intergenic (‑316/+7) | kgtP/rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 257908 = | NA (NA) | 109 (1.040) | 68/432 | NT | 98.2% | intergenic (+9/‑768) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | = 1293039 | 2 (0.020) | intergenic (‑117/‑488) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | 279163 = | 103 (0.980) | 67 (0.640) | 3/432 | NT | 43.5% | intergenic (‑2/+15) | afuB/insB1 | pseudogene, CP4‑6 prophage, ferric iron ABC transporter permease gene fragment,Phage or Prophage Related/IS1 transposase B |
| ? | NC_000913 | = 2760084 | 71 (0.680) | coding (1102/1410 nt) | yfjI | CP4‑57 prophage, uncharacterized protein | |||||
| * | ? | NC_000913 | 458787 = | 29 (0.280) | 75 (0.730) | 47/426 | NT | 72.4% | intergenic (+87/‑101) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | 608011 = | NA (NA) | intergenic (+23/‑54) | hokE/insL1 | toxic polypeptide, small/IS186 transposase | |||||
| * | ? | NC_000913 | = 458799 | 20 (0.190) | 82 (0.800) | 48/424 | NT | 80.7% | intergenic (+99/‑89) | clpX/lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | = 609347 | NA (NA) | intergenic (+170/+112) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_000913 | 1207790 = | 32 (0.310) | 77 (0.790) | 54/400 | NT | 77.1% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 16 (0.170) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 32 (0.310) | 65 (0.670) | 42/400 | NT | 74.0% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 16 (0.170) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1293032 = | 0 (0.000) | 88 (0.840) | 52/432 | NT | 100% | intergenic (‑110/‑495) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 26 (0.250) | 21/424 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1936520 = | 80 (0.760) | 11 (0.110) | 10/432 | NT | 12.1% | intergenic (‑206/‑132) | zwf/yebK | glucose‑6‑phosphate 1‑dehydrogenase/putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | = 1936524 | 81 (0.770) | 14 (0.130) | 12/430 | NT | 14.8% | intergenic (‑210/‑128) | zwf/yebK | glucose‑6‑phosphate 1‑dehydrogenase/putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | 2101750 = | NA (NA) | intergenic (‑6/+145) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 23 (0.230) | 19/416 | NT | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 37 (0.350) | 26/432 | NT | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 98 (0.940) | 58/432 | NT | 100% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | 3375664 = | 78 (0.750) | 2 (0.020) | 3/416 | NT | 2.6% | coding (798/1368 nt) | dcuD | putative transporter |
| ? | NC_000913 | 3375684 = | 76 (0.750) | coding (818/1368 nt) | dcuD | putative transporter | |||||
| * | ? | NC_000913 | = 3390055 | 67 (0.640) | 3 (0.030) | 3/426 | NT | 3.0% | coding (538/930 nt) | aaeR | transcriptional regulator for aaeXAB operon |
| ? | NC_000913 | = 3392499 | 129 (1.250) | coding (3758/3801 nt) | yhdP | DUF3971‑AsmA2 domains protein | |||||