Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F18 I0 R1 274 115.5 2655328 86.7% 2302169 226.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,852,083 T→C 10.2% E234G (GAG→GGG)  ilvB ← acetolactate synthase 2 large subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,852,0830TC10.2% 431.2 / 3.2 168E234G (GAG→GGG) ilvBacetolactate synthase 2 large subunit
Reads supporting (aligned to +/- strand):  ref base T (90/51);  new base C (6/18);  total (96/72)
Fisher's exact test for biased strand distribution p-value = 5.67e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 171 total aligned reads displayed.

GCTCTGCACGGTCGATATCGACATGAATGATTTTGGCATTCGGACAGAACTGCTCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑GCACATCCTTAGGAATGTCTATCCACACC‑GGGCCTGGGCGGCCTGATTGCGCAATGCGGA  >  NC_000913/3851847‑3852320
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                   
 ctctGCACGGTCGATATCGACATGAATGATTTTGGCATTCGGACAGAACTGCTCGGTTTTGCCAATCGCCCGGTCATCAAACCGCCCACC‑AGCACCAATCACAAATTCC‑CCC‑CCCTGCAAAAAAAAGTTGGGCTTGCCCACCCCGCGCACCCCACACAACCCCACCGACACCGAATGCCCCTTTCCCAACATCCCCAGCCCCATAAAACCAATGG‑GGTAAGCAATTTCCCCTTCTccc                                                                                                                                                                                                                                                  >  1:600219/1‑237 (MQ=255)
  aaaggcgggggcatttcgccaataatgtTTTTGGCCTTCGGACAGAACTGCTCGGTTTTGCCAACCGCCCGGTCATCAAAACGCGCCCCGAGCA‑CTATCAACAAATCC‑GCC‑ACCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGc                                                                                                                                                                                                                                                 <  1:1217695/216‑1 (MQ=255)
    tGCACGGTCGATATCGACATGAATGATTTTGGCATTCGGACAGAACTGCTCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACACCGGATGCGCTTTTGGCAACATGCCCAGCGCCATTCAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGccc                                                                                                                                                                                                                                               >  2:364925/1‑238 (MQ=255)
        cGGTTGATATCGACATGAATGATTTTGGCATTCGGACAGAACTGCCCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTc                                                                                                                                                                                                                                           <  2:412277/239‑1 (MQ=255)
         gttctatctccccATGATTGCTTTTTGCATTCGGACCGAACTGCTCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTACCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCa                                                                                                                                                                                                                                          <  1:648283/227‑1 (MQ=255)
           tCGATATCGACATGAATGATTTTGGCATTCGGACAGAACTGCTCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCAc                                                                                                                                                                                                                                         >  2:268401/1‑238 (MQ=255)
           tCGATATCGACATGAATGATTTTGGCATTCGGACAGAACTGCTCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGGGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCCGCCCCCTTAAAGTCATGGTGGTAGGCCGTTGCGCTTTCCCCCCCAGTTCAcc                                                                                                                                                                                                                                        >  1:721587/1‑238 (MQ=255)
           tCGATATCGACATGAATGATTTTGGCATTCGGACAGAACTGCTCGGTTTTGCCAATCGCCCGCTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCATCGACACCGGATGCGCTTTTTGCAACATGCCAACCGCCATTAAAGTCATGCTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCAc                                                                                                                                                                                                                                         >  2:1288705/1‑238 (MQ=255)
               tatCGACATGAATGATTTTGGCATTCGGACAGAACTGCTCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCAc                                                                                                                                                                                                                                     <  2:859418/238‑1 (MQ=255)
               tatCGACATGAATGATTTTGGCATTCGGACAGAACTGCCCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCAcc                                                                                                                                                                                                                                    <  2:148082/239‑1 (MQ=255)
                     cATGAATGATTTTGGCATTCGGACAGAACTGCTCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGCTACGCTTTTGGCAACATGCCCAGCGCCATTCAAGTCATCGTGGTAGGCAGTTGCGCTTTCTCCCCCAGGTCACGCcccccgggg                                                                                                                                                                                                                              >  1:1111720/1‑234 (MQ=255)
                     cATGAATGATTTTGGCATTCGGACAGAACTGCTCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTTTCCGCCAGTTCACGCACCCGTGCg                                                                                                                                                                                                                              >  2:895633/1‑239 (MQ=255)
                     cATGAATGATTTTGGCATTCGGACAGAACTGCTCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGGTCACGCACCCGTGCg                                                                                                                                                                                                                              >  2:1060874/1‑239 (MQ=255)
                     cATGAATGATTTTGGCATTCGGACAGAACTGCTCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGCAGGCCGTTCCGCTTTTTCCGCCAGTCCACGAACCCGGGCg                                                                                                                                                                                                                              >  2:569063/1‑239 (MQ=255)
                     cATGAATGATTTTGGCATTCGGACAGAACTGCTCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCACCATACCAACCGACAACGGATGCGCTTTTGGCACCATCCCCAGCGCCCTTAAAGCCATGGGGGTAGCCGTTTGCGCTTTCCCCCCCCGTTCACGACCCCggggg                                                                                                                                                                                                                              >  1:698811/1‑235 (MQ=255)
                      atgaatgaTTTTGGCATTCGGACAGAACTGCTCGGTTTAGCCAATCGCCCGGTCATCAAACCGCGCCCCGAGCA‑CTAGCACCAAACCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTTCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCgg                                                                                                                                                                                                                             <  2:83434/239‑1 (MQ=255)
                        gaatgaTTTTGGAATTAGGACAGAACTGCTCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCC‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGgc                                                                                                                                                                                                                           <  2:1060004/239‑1 (MQ=255)
                         aatgaTTTTGGCATTCGGACAGAACTGCTCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTTCGGgc                                                                                                                                                                                                                           >  2:727120/1‑238 (MQ=255)
                         aatgaTTTTGGCATTCGGACAGAACTGCTCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGgc                                                                                                                                                                                                                           >  2:61620/1‑238 (MQ=255)
                           tggttttGGCATTCGGCCAGACCTCCTCGGTTTGCCCAATCGCCCGGTCATCAAAACGCGCCCCGAGCA‑CTATCAACAAATCC‑GCC‑TCCGGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCa                                                                                                                                                                                                                        <  1:333510/236‑1 (MQ=255)
                               tttGGCATTCGGACAGAACTGCTCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAATTATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCAAGCGACAACGGTTGCGCTTTTGGCAACATGCCAAGCGCCATTCAAGCCATGGTGGCAGGCACTTGTGCTTTCTCCGCCCGTTCCCGAACCCGCGCGGGGGCTTTGa                                                                                                                                                                                                                    >  1:101589/1‑239 (MQ=255)
                                  ggCATTCGGACAGAACTGCTCGGTTTTGCCAATCGCCCGGCCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTACCGCACCCGTGCGGGCGCATTGGTc                                                                                                                                                                                                                  >  2:10001/1‑238 (MQ=255)
                                   gCATTCGGACAGAACTGCTCGGGTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCGGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCCGCGACAACGAATGCGCGTTTGGCAACATCCCCCGCGCCCCTAAAGTCATGGGGGTAGGCAAGTGGGCTTTGCCCCCCAGTTCCCCACCCCGGGCGGGGGCAGTgtggga                                                                                                                                                                                                                >  1:278045/1‑234 (MQ=255)
                                       tCGGACAGAACTGCTCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACACGTGCGGGCGCATTGAACACAccg                                                                                                                                                                                                            >  1:359982/1‑239 (MQ=255)
                                              caactgccttgtttgtccgtctgCCCGGTCATCAAATGGCGCACCGAGAC‑CTTGCCACTAATCC‑CCCGTCGTG‑ACACTCGAGTTGGTGGGGCGCACGCCTTGCATCCCCAGCTTCCCCAGCGGCAACGGATGTGCTTTTGGCACCATGCCCAGCGCTATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCGCCGCCTGTTCACGTACCCGTGCGGGCGCATTGATCACACcgccgc                                                                                                                                                                                                        <  1:401512/214‑1 (MQ=255)
                                                acgtgtCGGTTTTGCCAATCCCCCGGTAAACAAACCCGGCACCGAGCC‑CAATCAACAAACCC‑GCC‑CCCTGCAAAATGTAGTTGGGGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGccc                                                                                                                                                                                                      <  1:534236/231‑1 (MQ=255)
                                                    cTCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATaa                                                                                                                                                                                                >  2:289888/1‑238 (MQ=255)
                                                         ttttGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCAcc                                                                                                                                                                                          >  2:1090143/1‑239 (MQ=255)
                                                         ttttGCCAATCGCCCGGTCAACAAAACGCGCACCGAGCC‑CTATCAACAAACCC‑GCC‑GCCTGCAAAATATAGGTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGGCAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGccc                                                                                                                                                                                                      <  2:1222053/227‑1 (MQ=255)
                                                         ttttGCCAACCGCCCCGTAAACAAAACGCCACCCGGGCA‑CTA‑CAACAAAACCAGCC‑CCCTCAAAAATATGGTTGTGGGCGCGCACGCCGGGAATCCCCAGCAGACCAAGAGAGAACGGATGCGCTTTTGGCAACAGGCCAACCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCAcc                                                                                                                                                                                          <  1:808217/239‑1 (MQ=255)
                                                          tttGCCAATCGCCCGGTCAACAAAACGGGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCTGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCAcc                                                                                                                                                                                          <  2:967646/238‑1 (MQ=255)
                                                          tttGCCAATCGCCCGGTCAACAAAACGCGCCCCGAGCC‑ATATCAACAAATCC‑GCC‑TCCGGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCAcc                                                                                                                                                                                          <  2:609182/238‑1 (MQ=255)
                                                            tGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCCTTCAAGTCATGGTGGTAGGCAGTTGCGCTTTCCCCCCCACTTCACGCCCCCGTGCGGCCGCATTGACACCACCCCCCCCCAGAaaaaaacccggg                                                                                                                                                                                       >  1:1265193/1‑231 (MQ=255)
                                                              cccctCGCCCGAGCATCAAGACCCCCGCCGAGCC‑CTTTCGACAAAGCC‑CCC‑CCCTGAAAAATATAGTTGGTGCTGCGCACGCCGTGCACCCCAAGACTCCCCAGCGCCAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGTCATTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCg                                                                                                                                                                                     <  1:614595/235‑1 (MQ=255)
                                                                   cgcccgtcacacaAACCGCCCTCCGAGCA‑CCATCAACAAACCC‑GCC‑TCCTACAAAATATATGTGGTGCTGCGCACCGCGTGCATCCCCAGCAGACCCAGCTACAACGGATGCGCTTGTGGTAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTgg                                                                                                                                                                                <  1:673440/228‑1 (MQ=255)
                                                                             tcaAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTaa                                                                                                                                                                       >  2:717452/1‑238 (MQ=255)
                                                                                    gcgcACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCCGATAAAGAACCGGGCGTTTGGCAGCGTTAttcatccc                                                                                                                                                                >  2:1020418/1‑236 (MQ=255)
                                                                                            gaccccTATCAAAAAACCC‑CCC‑CCCTGCAAAATATAGGTGGTGCTGCGCACGCCGGTCATCCCCATCATCCCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGt                                                                                                                                                        <  1:61620/234‑1 (MQ=255)
                                                                                            aGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCCCCCGTGCGGGCGCATTGATCCCACCCCCCCCCCGATAAAGCACCGGGCGTTTGGCCGCGTTAATCATCGCCGCcgcgac                                                                                                                                                       >  1:271341/1‑237 (MQ=255)
                                                                                                ccccatcacaaaccccccc‑tcctGCAAAATTTGGTTGGGGTGGCGCCCGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGACATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCa                                                                                                                                                      <  1:882210/221‑1 (MQ=255)
                                                                                                   aTCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAAt                                                                                                                                                 >  2:1273511/1‑239 (MQ=255)
                                                                                                        caaATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGAAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTCCGGGCGCATTGATACCACCACCGCCCAGATAAAGAACCGCGCGTTTGGCAGCGTTAATCATAGCCCCTGCGTCACGAATGCttt                                                                                                                                            >  2:136466/1‑239 (MQ=255)
                                                                                                          aaTCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTttct                                                                                                                                          <  2:838160/239‑1 (MQ=255)
                                                                                                            tCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTttctt                                                                                                                                         >  2:59935/1‑238 (MQ=255)
                                                                                                                              tataGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGCTCACACCGCCCCCCAGATAAAGCACCAGGGTTTTGGCCGCGTTAATCATCGCCGCGGAGGAAGGAAAGCTTTTTTCGGAAAAGGCagggggg                                                                                                                        >  1:118158/1‑237 (MQ=255)
                                                                                                                                   ttGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGCCGCATTGATCACACCTCCGCCCAGCTAAAGCACCCGGCGTTGGGCAGCGTTAATCATCGCCCCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGggggggggggg                                                                                                                   >  1:948098/1‑238 (MQ=255)
                                                                                                                                    tggtgcccccctccgccctcccccccAGCATCCCCCGGTACAATGGATGCGTTTTTGGCAACATGCCCATCGCCATTAAAGTCATGGTGGTCGGTAGTTGCGCTTTCACCGCCAGTTCACGCACCCGTGCGGGCGCATGGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCt                                                                                                                  <  1:993934/217‑1 (MQ=255)
                                                                                                                                        gctgcGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGGGGCGGCttttt                                                                                                              >  2:790217/1‑239 (MQ=255)
                                                                                                                                        gctgcGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGGGGCctttt                                                                                                              >  2:1318583/1‑239 (MQ=255)
                                                                                                                                        gctgcGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCttttt                                                                                                              >  2:1152248/1‑239 (MQ=255)
                                                                                                                                        gctgcGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCCGCGGGtttt                                                                                                               >  2:660646/1‑238 (MQ=255)
                                                                                                                                                 gCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTc                                                                                                                                                       >  1:1041091/1‑189 (MQ=255)
                                                                                                                                                 gCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTc                                                                                                                                                       <  2:1041091/189‑1 (MQ=255)
                                                                                                                                                 gCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCCTTTTCTGCCCTaa                                                                                                     >  2:1208305/1‑238 (MQ=255)
                                                                                                                                                               gCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCTTTACAGTCATGGTGGTCGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCCGATAATGCACCGGGCGTTTGGCAGCGTTAGTCATCCCCGCTGCGTCCGGCACGCTTTCTTCGCTTAAGTCGGGGGGGGCCGCgttttttcccccaaggtgcgttttttca                                                                                       >  1:1158501/1‑216 (MQ=255)
                                                                                                                                                                      cAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCCGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGCCGGGGGCGGCGGCTTTTTCTGCCATAACG‑GGC‑CGG‑GTTTCAATCCCac                                                                             >  2:1124144/1‑238 (MQ=255)
                                                                                                                                                                      cAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCGTTTTCTGCCTTAGCG‑GGT‑TGG‑GTTTCAATCTCaa                                                                             >  2:151336/1‑239 (MQ=255)
                                                                                                                                                                       aGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTgg                                                                                                                                                                                >  2:630939/1‑142 (MQ=255)
                                                                                                                                                                        gCGACAACGGATGCGCTTTTAGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCCCCGCTGCGTACCGAATGCTTTCTTGGCTAAAGGCGGGGGGGCGGGCTTTTTTTGCCATCACG‑GGcaggggtttaactctaaaa                                                                             >  1:181867/1‑221 (MQ=255)
                                                                                                                                                                         cGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGG‑GTTTTAATCTCaaaa                                                                           >  2:776312/1‑238 (MQ=255)
                                                                                                                                                                         cGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCCCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGAGGCGGCCTTTTTCGCCCTACCG‑GGC‑CAT‑GGTTAAATCTCaaaaa                                                                          >  1:1049969/1‑239 (MQ=255)
                                                                                                                                                                           cccaCGGTTGCGCTTTTCCCCACACTCCCCGCCCCTCTAAAGTCTTGGTGGTAGGCTGTTGCGTTCTCCCCGCCGAATCACGCACCCGTGGGGGCGCATTGATCACCCCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACt                                                                        <  1:660646/236‑1 (MQ=255)
                                                                                                                                                                               cGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCCTTTTCTGCCATAGCG‑GCC‑TGT‑GTTTCAATCTCAAAAACTG‑CCg                                                                   >  2:228425/1‑239 (MQ=255)
                                                                                                                                                                                   tGCCCTTTTGGCACACTGCCCGGGGCCTTTAAAGTCATGGGGGTAGGCAGTCGCGCTTCCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGttt                                                                <  1:1122557/238‑1 (MQ=255)
                                                                                                                                                                                     tcgttgtgctccactGCCCACCGCAATTTAAGTCAGGGGGGGAGGGATTCCCTCTTTGCCCGACATTTCACGCACCCGTGCCGGCGCATTGATCTCACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTGAATCATCGCCTCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑Gca                                                            <  1:466611/225‑1 (MQ=255)
                                                                                                                                                                                     cggttttGGCAACATGCCCAGGGCCATTAAAGTCAGGGTGGGAGGCAGTTGCGCTTTCTCCGCCAGTTCGCGCCCCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑Gc                                                             <  2:802727/235‑1 (MQ=255)
                                                                                                                                                                                      ttttttGGCACCATGCCCAGGCTCACATAAGCCAGGGTGGGTGGCGGTTGGGCTGTTTCCGCCAGTGCCCGCACCTGTGGTGGCTCCTTGGTCCCACCGCCACCCAGATAAAGAACCGGGCGTTTGGGAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTACGCTAAAGGCGGGTGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAATACTG‑CCGTTT‑Gcac                                                           <  1:136466/237‑1 (MQ=255)
                                                                                                                                                                                      gtttttGGCAACGTCCCCAGGCCCTTTAAAGTCGTGGTGGTAGGCCGTTGCGCTTTCCCCGCCAGTTCACGCCCCCGTGCGGGCGCATGGATCACCCCGCCGCCCAGATAAAGCCCCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑Gcac                                                           <  1:1208305/237‑1 (MQ=255)
                                                                                                                                                                                      gtttttGGAAACTTGCCCAGCCCCATTAAAGTCATGTTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑Gca                                                            <  2:484624/236‑1 (MQ=255)
                                                                                                                                                                                      gcTTTTGGCAACCTGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑Gca                                                            <  2:681553/238‑1 (MQ=255)
                                                                                                                                                                                      gcTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑Gca                                                            <  2:276207/238‑1 (MQ=255)
                                                                                                                                                                                      gcTTTTGGCAACATGCCCAAGGCCAGTAAAGTCAGGGTGGTAGGCAGTTGCCCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑Gca                                                            <  2:42749/238‑1 (MQ=255)
                                                                                                                                                                                      gcTTTTGGCAAACTGCCCAGCGCCATTAAAGCGAGGGTGGTAGGCATTTGCTCTTTCCCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑Gca                                                            <  2:707817/238‑1 (MQ=255)
                                                                                                                                                                                      gcTTTTAGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑Gca                                                            <  2:181867/238‑1 (MQ=255)
                                                                                                                                                                                      ctttttGGCACATTCCCCGGCGCCTTTAAATGCATGGGGGTGGGCATGTCGGTTTCCCCCCCCAGTTCACGCCCCCGTGCGGGCGCATTGATCACACCGGCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑Gcac                                                           <  1:722717/237‑1 (MQ=255)
                                                                                                                                                                                      ccTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑Gca                                                            <  2:278045/237‑1 (MQ=255)
                                                                                                                                                                                       cTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCCTAGCG‑GGC‑TTG‑GTTTCAATCTCAAAAAATG‑CCGTTT‑Gccca                                                          >  2:1122557/1‑239 (MQ=255)
                                                                                                                                                                                          ttGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCTGCCCAGATAAAGCACCGGCCGTTTGGCAGCGTTAATCATCGCCGCTGCGTACCGAATGCGTTCTTCGCTAAAGGCGGGGGTGGGGGCGTTTTTTG‑GACTCCC‑GGC‑GGTGGTTTTAACCCCAAAAAATG‑CCGTTT‑Gcaaaccc                                                       >  1:1001514/1‑234 (MQ=255)
                                                                                                                                                                                               cactctcccgccccctttAAGGTCTGGGTGGTAGGCTTTTGCGCTTCCCCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACCCCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑GCACATCCTTAgg                                                  <  1:369995/223‑1 (MQ=255)
                                                                                                                                                                                               aaCATGCCCGGCGCCATTAAATGCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑GCACATCCTTAgg                                                  <  2:1278820/239‑1 (MQ=255)
                                                                                                                                                                                               aaCATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTGCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑GCACATCCTTAgg                                                  <  2:303230/239‑1 (MQ=255)
                                                                                                                                                                                                aCATGCCCAGGCCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑GCACATCCTTAgg                                                  <  2:991657/238‑1 (MQ=255)
                                                                                                                                                                                                  aTGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACcgccgc                                                                                                                                                                                                        <  1:113136/91‑1 (MQ=255)
                                                                                                                                                                                                   tgccacgcccctttAAAGTCCGGGTGGTAGGGATTTCCGTTTCCCCCGCCAGTTCCACCCCCGGTGCGGGCGGCTTGATCCCACCGCCGCCCGGAGAAAGCCCCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑GCACATCCTTAGGAATg                                              <  1:268401/227‑1 (MQ=255)
                                                                                                                                                                                                    gCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGCCGGGGGCGGCGGCTTTTTCTGCCCTAGCG‑GGC‑TGT‑GGTTCAATTCCAAAAACCG‑CCGTTTGGCACACCCTAGGGaac                                               >  1:145349/1‑237 (MQ=255)
                                                                                                                                                                                                    gCCCAGCGCAATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCCCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑GCACATCCTTAGGAATGt                                             <  2:1265193/239‑1 (MQ=255)
                                                                                                                                                                                                               ttAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATCAAGCACCGGGCGTTTTGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGCCCTTTTCTGCC‑CACCGCGGC‑CGT‑GGTGTCAGCTCAAAAACCG‑GCGCTT‑GCACACCCCTAGGAATGTGTTTCCAAAcc                                  >  1:890981/1‑239 (MQ=255)
                                                                                                                                                                                                                       aTGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑GCACATCCTTAGGAATGTCTATCCACACC‑GGGCCttg                         >  2:494134/1‑237 (MQ=255)
                                                                                                                                                                                                                         ggtggtAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑GCACATCCTTAGGCATGTCTATCCCCACC‑GGGCCTGggc                       >  2:251524/1‑239 (MQ=255)
                                                                                                                                                                                                                                     ttGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGACTGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCCTTTTCTGCCATCAGG‑GGG‑TCG‑GTTTTCATCTCAAAAACCGCCCGTTT‑TC‑CACCCTTTGGAAGTTCTTTTCACACC‑GGGCCCGGGCGGCCTGCTTgtc           >  1:239991/1‑237 (MQ=255)
                                                                                                                                                                                                                                     ttGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑GCACATCCTTAGGAATGTCTATCACCACC‑GGGCCTGGGAGGCCCGATTgc            >  2:366059/1‑238 (MQ=255)
                                                                                                                                                                                                                                     ttGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑GCACACCCTTAGGAATGGCTTTCCACACC‑GGGCCTGGGCGGGCTGCTTgc            >  2:756980/1‑238 (MQ=255)
                                                                                                                                                                                                                                     ttGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTCCGCCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTTCCAGACGC‑GGC‑TGC‑GTTTGAATCTCAAAAACTA‑CCGGTG‑GCACCACCTTTAGAAGTTCTTACCCCACCGGGGCGTGggcggcgagtgggg            >  1:1320031/1‑231 (MQ=255)
                                                                                                                                                                                                                                      tgggcTTTCGCCGCCAGTGCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑GCACATCCTTAGGAGTGTCTATCCACACC‑GGGCCTGGGCGGCCTGATTgcg           <  2:375480/235‑1 (MQ=255)
                                                                                                                                                                                                                                      tGCGCTTTCTCCGCCCGTTCCCGCACCCGGGGGGGCGCATTGACCCCCCCGCCGCCCAGATAAAGCACCGGGGTTTTGGGAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑GCACATCCTTAGGAATGTCTATCCACACC‑GGGCCTGGGCGGCCTGATTgcg           <  1:788559/238‑1 (MQ=255)
                                                                                                                                                                                                                                      tGCCCTCTCTCCCCCTGTTCCGCCCCCCGTGGGGGCTCATTGATCCACCCGGCGCCCAGATAAAGCCCCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑GCACATCCTTAGGAATGTCTATCCACACC‑GGGCCTGGGCGGCCTGATTgcg           <  1:251524/238‑1 (MQ=255)
                                                                                                                                                                                                                                       gggcTTTCTCCCCCGGTTCGCGCCCCCGGGCGGGTGACTGGATACCCCCCCCGCCCAGGTAAGTCCTGCGGCGTTTGGCAGCGTTGATCATCGCCGCGGCGGCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑TTTTCAATCTCAAAAACTG‑CCGTTT‑GCACATCCTTAGGAATGTCTATCCACACC‑GGGCCTGGGCGGCCTGATTGCGCa         <  1:10001/237‑1 (MQ=255)
                                                                                                                                                                                                                                        cgcTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCCGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCC‑GGC‑TGT‑GTTTCAATCCCAAAAACTG‑CCGTTT‑GCACAACCTTCGGCAGGTCTATCCACCCC‑AGGCCCGGGCGGccctgtttcccaa        >  1:377394/1‑228 (MQ=255)
                                                                                                                                                                                                                                          cTTTCTGCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCCCTGCGTCACGAATGCTTTCTTAGCTACAGGCGGGGGCGGAGTCTTTGTCTGCCAGA‑CG‑GGCGTGT‑GGTTACATTTCAAAAACTT‑CCGCTT‑GCACATCCTCTGGAACGTTTGCTCACACC‑CGGCCAGGCGGGCGTAGTTGCGCaaaa      >  1:219036/1‑237 (MQ=255)
                                                                                                                                                                                                                                              ctcCGCCAGTTCACGCACCCGTGCGGGCGCATTGGTCCCCCCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑GCACATCCTTAGGAATGTCTATCCACACC‑GGGCCTGGGCGGCCTGATTGCGCAATGCGGa  <  2:935411/239‑1 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                   
GCTCTGCACGGTCGATATCGACATGAATGATTTTGGCATTCGGACAGAACTGCTCGGTTTTGCCAATCGCCCGGTCATCAAAACGCGCACCGAGCA‑CTATCAACAAATCC‑GCC‑TCCTGCAAAATATAGTTGGTGCTGCGCACGCCGTGCATCCCCAGCATACCCAGCGACAACGGATGCGCTTTTGGCAACATGCCCAGCGCCATTAAAGTCATGGTGGTAGGCAGTTGCGCTTTCTCCGCCAGTTCACGCACCCGTGCGGGCGCATTGATCACACCGCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCG‑GGC‑TGT‑GTTTCAATCTCAAAAACTG‑CCGTTT‑GCACATCCTTAGGAATGTCTATCCACACC‑GGGCCTGGGCGGCCTGATTGCGCAATGCGGA  >  NC_000913/3851847‑3852320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A