Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F27 I0 R1 83 86.1 2053078 89.1% 1829292 215.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,445,981 T→G 29.1% G34G (GGT→GGG)  ydbL → DUF1318 family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,445,9810TG29.1% 73.0 / 4.0 44G34G (GGT→GGG) ydbLDUF1318 family protein
Reads supporting (aligned to +/- strand):  ref base T (4/25);  new base G (12/3);  total (16/28)
Fisher's exact test for biased strand distribution p-value = 2.69e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGCATTGAAGTCGCTGCACCTAAGGAACCGATCACTATCAATATGAACGTTAAAATTGAGCATGAGATCATCATCAAGGCAGACAAAGATGTCGAAGAGCTGCTTGAAACTCGTAGCGATCTTTTCTGAGGTGATGATGAAGAAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAGCGAGTTACCAACAACTGGCAAAGCAAAATAATGTGTCGGTAGATGATATCGCGAAACTCGCCGGGCAAAAGCTCGTA‑GCTCGGGCC‑AAACCGGGGGAATATGTACAAGGGATAAACGGTAAATGGGTGCGAAAATTTTAA  >  NC_000913/1445744‑1446206
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                    
tgCATTTAAGTCGCTGCACCTAAGGAACCGATCACTATCAATATGAACGTTAAAATTGAGCATGAGATCATCATCAAGGCAGACAAAGATGTCGAAGAGCTGCTTGAAACTCGTAGCGATCTTTTCTGAGGTGATGATGAAGAAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTg                                                                                                                                                                                                                                     <  1:307187/238‑1 (MQ=255)
   aTTTAAGTCGGTGCCACAAAGGAACCGGTCACTAAAAATATGAACGTTAAAATTGATGAAGAGTGCATCAACAAGGCAGACAAAGATGTCGAAGAGCTGCTTGAAACTCGTAGCGATCTTTTCTGAGGTGATGATGAAGAAAACATTTCTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGaa                                                                                                                                                                                                                                   <  1:639321/238‑1 (MQ=255)
   aTTGAAGTCGCTGCACCTAAGGAACCGATCACTATCAATATGAACGTTAAAATTGAGCATGAGATCATCATCAAGGCAGACAAAGATGTCGAAGAGCTGCTTGAAACTCGTAGCGATCTTTTCTGAGGTGATGATGAAGAAAACATTACTTCTTTGTCCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGG‑CGAAGGCACGAAATCAGGGGCGGGGAGGGGaaa                                                                                                                                                                                                                                  >  1:982377/1‑239 (MQ=255)
                         aaCCGATCCCTATCAATATGAACGTTAAAATTGAGCATGAGATCATCATCAAGGCAGACAAAGATGTCGAAGAGCTGCTTGAAACTCGTAGCGATCTTTTCTGAGGTGATGATGAAGAAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGtt                                                                                                                                                                                                              <  2:388165/237‑1 (MQ=255)
                          aCCGATCACTATCAATATGAACGTTAAAATTGAGCATGAGATCATCATCAAGGCAGACAAAGATGTCGAAGAGCTGCTTGAAACTCGTAGCGATCTTTTCTGAGGTGATGATGAAGGAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACGCAGGGGCGGGGAGGGGGAAAAATTTATGGGTATATGGtgtgg                                                                                                                                                                                                           >  1:214751/1‑235 (MQ=255)
                          aCCGATCACTATCAATATGAACGTTAAAATTGAGCATGAGATCATCATCAAGGCAGACAAAGATGTCGAAGAGCTGCTTGAAACTCGTAGCGATCTTTTCTGAGGTGATGATGAAGAAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGGGAAACATTTTACGGTTATCTGGTTgc                                                                                                                                                                                                            >  2:607971/1‑238 (MQ=255)
                                   tATCAATATGAACGTTAAAATTGAGCATGAGATCATCATCAAGGCAGACAAAGATGTCGAAGAGCTGCTTGAAACTCGTAGCGATCTTTTCTGAGGTGATGATGAAGAAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGGGAAACATTTTTCGGTTATCTGGTTGGGCTGAAAACg                                                                                                                                                                                                  >  2:1004951/1‑239 (MQ=255)
                                       aaaatagcagTTAAAATTGGACAGGAGACAATCGTCAAGGCAGACAAAGATGGCGAAGAGCAGCTTGAAACTCGTAGCGATCTTGTCTGGGTTGATGATGAAGAAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTATGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGGGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATg                                                                                                                                                                                             <  1:316815/230‑1 (MQ=255)
                                             aaCGTTAAAATTGAGCATGAGATAATCATCAAGGCAGACAAAGATGTCGAAGAGCTGCTTGAAACTCGTAGCGATCTTTTCTGAGGTGATGATGAAGAAAACATTACTTCTTTCTGCGTTTCTTGTTGGGCTGGTAAGCCGCAATGTAATGGCATTGACTCTGGATGAAGCCG‑GAACTCAGGGGCGGGTAGGGGAAAAACTTTTCGGTTAACTGGTTTGCCTGGAAACGG‑ATGCGGaaa                                                                                                                                                                                       >  1:711774/1‑239 (MQ=255)
                                              aCGTTAAAATTGAGCATGAGATCATCATCAAGGCAGACAAAGATGTCGAAGAGCTGCTTGAAACTCGTAGCGATCTTTTCTGAGGTGATGATGAAGAAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGaa                                                                                                                                                                                        <  2:711774/237‑1 (MQ=255)
                                               cGTTAAAATTGAGCATGAGATCATCATCAAGGCAGACAAAGATGTCGAAGAGCTGCTTGAAACTCGTAGCGATCTTTTCTGAGGTGATGATGAAGAAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGGAGGGGAAACATTTTACGGTTTACTGGTTGCGCTGAAAACGG‑ATGCTggacaa                                                                                                                                                                                     >  2:405821/1‑234 (MQ=255)
                                               cGTTAAAATTGAGCATGAGATCATCATCAAGGCAGACAAAGATGTCGAAGAGCTGCTTGAAACTCGTAGCGATCTTTTCTGAGGTGATGATGAAGAAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGGAGGGGAAAAATTTTTAGGTTGTTCGGTTGGGCTGGAAAAgggagtgggaaaa                                                                                                                                                                                      >  1:706041/1‑228 (MQ=255)
                                                   aaaaTTGAGCATGAGATCATCATCAAGGCAGACAAAGATGTCGAAGAGCTGCTTGAAACTCGTAGCGATCTTTTCTGAGGTGATGATGAAGAAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGGAGGGGAAACATTTTACGGGTATCTGGTTGCGCTGAAAACGG‑GTGCTGAAAAAaaga                                                                                                                                                                                 >  2:167212/1‑239 (MQ=255)
                                                   aaaaTTGAGCATGAGATCATCATCAAGGCAGACAAAGATGTCGAAGAGCTGCTTGAAACTCGTAGCGATCTTTTCTGAGGTGATGATGAAGAAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGGAGGGGAAAAAATTTTCGGTTTTTTGTTTTGGCTTAAAAAGGAATGCGGAAACagag                                                                                                                                                                                  >  2:757757/1‑239 (MQ=255)
                                                      aTTGAGCATGAGATCATCATCAAGGCAGACAAAGATGTCGAAGAGCTGCTTGAAACTCGTAGCGATCTTTTCTGAGGTGATGATGAAGAAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAACGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAAt                                                                                                                                                                              <  2:829931/239‑1 (MQ=255)
                                                              tGAGATCATTAGTAAGGCAGACAAAGTTTTCGAAGGGCTGCTTGAAACTCGTAGCGATCTTTTCTGAGGTGATGATGAAGAAAACATTACTTCTTTGGTCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAGcc                                                                                                                                                                      <  1:58866/239‑1 (MQ=255)
                                                                  atcatcatcAAGGCAGACAAAGATGTCGAAGAGCTGCTTGAAACTCGTAGCGATCTTTTCTGAGGTGATGATGAAGAAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTgcg                                                                                                                                                                                                           <  2:801057/199‑1 (MQ=255)
                                                                          caAGGCAGACAAAGATGTCGAAGAGCTGCTTGAAACTCGTAGCGATCTTTTCTAAGGTGATGATGAAGAAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCACTGTAATGGCATTGACTCTGGATGAAGCCA‑GCACTCAGGGGCGGGTAAGGGGAACATTTTTCTGTTATCTTGGGTCGCTGAAAAACG‑AAACAGAAAAAGAGAAAATAATAGCGGAAATAAAAGcg                                                                                                                                                          >  1:480307/1‑238 (MQ=255)
                                                                           aaGGCAGGAAAAGATGTCGAAAGGCTGGTTTAAACTGTTAGCGATTTTTTCTGAGGTTATGATGAAGAAAACCTTTCTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCg                                                                                                                                                         <  1:1004951/239‑1 (MQ=255)
                                                                                                 aggtgtttGAAACTCGTGGGGATTTTTTCTGAGGTGATGATAAAGAAAACATTACTTCTTTGTGCGTTTCTTGGTGGGCTGGTAAGCAGGAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAGCGAGTTACcaaca                                                                                                                                   <  1:167212/233‑1 (MQ=255)
                                                                                                  gctgctTGAAACTCGTAGCGATCTTTTCTGAGGTGATGATGAAGAAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCGGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAACCGACATTAATGCCGAAAGGAAAGCGGGTTACcaacaa                                                                                                                                  >  2:353836/1‑239 (MQ=255)
                                                                                                        ttatactggtttcgtctttttttGAGGTGATGATGAAGAAAACATTACTTCTTTGTGCGTTGCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAGCGAGTTACCAACAACTGgca                                                                                                                            <  1:114262/222‑1 (MQ=255)
                                                                                                        tGAAACTCTTAGCGTTCTTTTGTGAGGTGATGATGAAGAAAACATTTCTCCTTTGTGCGTTTCTTTGTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAGCGAGTTACCAACAACTGgca                                                                                                                            <  1:103028/239‑1 (MQ=255)
                                                                                                        tGAAACTCGTAGCGATCTTTTCTGGGGTGATGATGAAGGAAACATTACTGCTTTGTGCGTTTCTTGGTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAGCGAGTTACCAACAACTGgca                                                                                                                            <  2:214751/239‑1 (MQ=255)
                                                                                                                        tttgtatGAGGTGATGATGAAGAAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAGCGAGTTACCAACAACTGGCAAAGCAAAATAATgtgt                                                                                                            <  2:480307/233‑1 (MQ=255)
                                                                                                                           ttCTGAGGGGATGATGAAGAAAACATTACTTCGTTGTGCGTTTCTGGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCGTGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAGCGAg                                                                                                                                            <  2:275808/204‑1 (MQ=255)
                                                                                                                                  gTGATGATGAAGAAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACa                                                                                                                                                                                     <  2:247039/156‑1 (MQ=255)
                                                                                                                                  gTGATGATGAAGAAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGGTGCGCTGAAAACGG‑ATGCTGAAACa                                                                                                                                                                                     >  1:247039/1‑156 (MQ=255)
                                                                                                                                                         tttttGTGCGTTTCTGGGTGGGCTGGTAAGGAGAAATGTAATGGCCTTGTCTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGGGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAGCGAGTTACCAACAACTGGCAAAGCAAAATAATGTGTCGGTAGATGATATCGCGAAACTCGCCGGGCaaa                                                                           <  1:757757/237‑1 (MQ=255)
                                                                                                                                                         ttcttGTGCGTTTCTTGTTAGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAGCGAGTTACCAACAACTGGCAAAGCAAAATAATGTGTCGGTAGATGATATCGCGAAACTCGCCGGGCaaa                                                                           <  2:1830/236‑1 (MQ=255)
                                                                                                                                                            ttGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGGGAAACATTTTTCGGTTTTCTGGTTGCGCTGGAAACGG‑ATGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAACGAGTTACCAACAACCGGCCAAGCACAATAATGTGTCGGTAGATGGTATCGCGAAACTCGCCCGGCaaaa                                                                          >  2:546244/1‑237 (MQ=255)
                                                                                                                                                                                  gtaaggagacaggTATTGGCATTGACTCCGGATGAAGCCC‑GAACTGCGGGGCCGGTCAGTGAAACATTTTACGGTTAGTTGGTTGCGCTGAAAACGG‑ATGATAAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAGCGAGTTACCAACAACTGGCAAAGCAAAATAATGTGTCGGTAGATGATATCGCGAAACTCGCCGGGCAAAAGCTCGTA‑GCTCGGGCC‑AAACCggg                                                <  1:862507/227‑1 (MQ=255)
                                                                                                                                                                                  gaaaGCAGCATTGTAATGGCATTGACTCGGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAGCGAGTTACCAACAACTGGCAAAGCAAAATAATGTGTCGGTAGATGATATCGCGAAACTCGCCGGGCAAAAGCTCGTA‑GCTCGGGCC‑AAACCggg                                                <  1:353836/237‑1 (MQ=255)
                                                                                                                                                                                   gaagggacaATTTTATGGATTTGGCTCTGGATGGAGGCG‑GAACGCAGGGGGGGGTAGGGTAACAATTTTACCGTTAGCTGGTTGGTCTGAAAACGG‑AAGCTGAAACAGAGAAATTAGTAGCCGAAATTAATGCCGAACGTAAAGCGAGTTACCAACAACTGGCAAAGCAAAATAATGTGTCGGTAGATGATATCGCGAAACTCGCCGGGCAAAAGCTCGTA‑GCTCGGGCC‑AAACCggg                                                <  1:546244/231‑1 (MQ=255)
                                                                                                                                                                                    gaggagaaattgtattggtttGATTCTGGATGAAGCAG‑GAACTCAGGGGCGGGTAGGTGAAAAATTTTACGGTTAGCTGGTTGCCGTGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAGCGAGTTACCAACAACTGGCAAAGCAAAATAATGTGTCGGTAGATGATATCGCGAAACTCGCCGGGCAAAAGCTCGTA‑GCTCGGGCC‑AAACCgggg                                               <  1:928729/219‑1 (MQ=255)
                                                                                                                                                                                    cccaggcaATTTAATGGCCTTGACTCTGGATGAAGCCA‑GAACTCAGGGGGGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAGCGAGTTACCAACAACTGGCAAAGCAAAATAATGTGTCGGTAGATGATATCGCGAAACTCGCCGGGCAAAAGCTCGTA‑GCTCGGGCC‑AAACCggg                                                <  2:247332/232‑1 (MQ=255)
                                                                                                                                                                                       cataaaTGAAATGGCATTGACCCTGAATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAATTTAGTAGCCGACATTAATGCCGAACGTAAAGCGAGTTACCAACAACTGGCAAAGCAAAATAATGTGTCGGTAGATGATATCGCGAAACTCGCCGGGCAAAAGCTCGTA‑GCTCGGGCC‑AAACCGGGGGAat                                           <  2:556521/235‑1 (MQ=255)
                                                                                                                                                                                            aTGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑AAGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAGCGAGTTACCAACAACTGGCAAAGCAAAATAATGTGTCGGTAGATGATATCGCGAAACTCGCCGGGCAAAAACTCGTA‑GACCGGGCC‑AAACCGGGGGGATATGtt                                      >  2:831189/1‑238 (MQ=255)
                                                                                                                                                                                               tAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAGCGAGTTACCAACAACTGGCAAAGCAAAATAATGTGTCGGTAGATGATATCGCGAAACTCGCCGGGCAAAAGCTCg                                                                     <  2:592636/207‑1 (MQ=255)
                                                                                                                                                                                                      aTTTACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGGAGGTGAAACTTTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAGCGAGTTACCAACAACTGGCAAAGCAAAATAATGTGTCGGTAGATGATATCGCGAAACTCGCCGGGCAAAAGCTCGTA‑GCTCGGGTC‑AAACCGGGGGAATATGTACAAGGGATa                             <  1:831189/238‑1 (MQ=255)
                                                                                                                                                                                                         gACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGGGAAACATTTTTCGGTTATCTGGTTGCGCTGAAAACGG‑GTGCTGAAACAGAGAAATTAGTAGCCGGCATTAATGCCGAAAGTAAAGGGAGTTACCAACAACTGGGAAAGCAAAATAATGTGTCGGGAGAAGATATCCCGGAAACCGCCGGGCAAAAACACGTAGGCCGGGGCA‑AAAACGGGGGAA‑ATGTACAAggggaaaaaa                         >  1:606436/1‑232 (MQ=255)
                                                                                                                                                                                                                            aaCTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAGCGAGTTAcc                                                                                                                                       <  2:1012720/113‑1 (MQ=255)
                                                                                                                                                                                                                               tCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAGCGAGTTACCAACAACTGGCAAAGCAAAATAATGTGTCGGTAGATGATATCGCGAAACTCGCCGGGCAAAAGCTCGTA‑GCTCGGGCC‑AAACCGGGGGAATATGTACAAGGGATAAACGGTAAATGGGTGCGAAAAtttt    <  2:982377/239‑1 (MQ=255)
                                                                                                                                                                                                                                 aGGGGCGGGGAGGTGAAAAATTTTACGGGTATCTGGGTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAATTAGAAGCCGACATTAATGCCGAACGGAAAGCGAGTTACCAACAACTGGCAAAGCAAAATAATGTGTCGGTAGAGGATATCGCGCAACTCGCCGGGCAAAAACACGTA‑GCCCGGGCCAAAACCGGGGGAA‑ATGTAAAAAGGAGAAAAGGGAAAGGGGGGGGGAAAATTTaa  >  1:615564/1‑239 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                    
CGCATTGAAGTCGCTGCACCTAAGGAACCGATCACTATCAATATGAACGTTAAAATTGAGCATGAGATCATCATCAAGGCAGACAAAGATGTCGAAGAGCTGCTTGAAACTCGTAGCGATCTTTTCTGAGGTGATGATGAAGAAAACATTACTTCTTTGTGCGTTTCTTGTTGGGCTGGTAAGCAGCAATGTAATGGCATTGACTCTGGATGAAGCCA‑GAACTCAGGGGCGGGTAGGTGAAACATTTTACGGTTATCTGGTTGCGCTGAAAACGG‑ATGCTGAAACAGAGAAATTAGTAGCCGACATTAATGCCGAACGTAAAGCGAGTTACCAACAACTGGCAAAGCAAAATAATGTGTCGGTAGATGATATCGCGAAACTCGCCGGGCAAAAGCTCGTA‑GCTCGGGCC‑AAACCGGGGGAATATGTACAAGGGATAAACGGTAAATGGGTGCGAAAATTTTAA  >  NC_000913/1445744‑1446206

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A