Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F9 I0 R1 260 102.5 2178490 93.2% 2030352 226.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,069,799 G→T 12.0% T201K (ACA→AAA)  yihR ← putative sulphoquinovose mutarotase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,069,7990GT12.0% 407.0 / 8.0 174T201K (ACA→AAA) yihRputative sulphoquinovose mutarotase
Reads supporting (aligned to +/- strand):  ref base G (67/84);  new base T (17/6);  total (84/90)
Fisher's exact test for biased strand distribution p-value = 1.25e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 177 total aligned reads displayed.

GTTAGGCGGGCAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAA‑CCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAACTGGGCGGCAGAAAA  >  NC_000913/4069561‑4070035
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                              
 ttAGGCGGGCAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAA‑CCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GGGTGGTCGATTTTTTTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGTTCATCAAAGGGGTGAAGC‑GTTgg                                                                                                                                                                                                                                               >  2:899596/1‑238 (MQ=255)
 ttAGGCGGGCAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTAT‑AA‑CCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GGGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTAATCAACGGGGTGAAGC‑GTTGTc                                                                                                                                                                                                                                              >  2:367372/1‑239 (MQ=255)
     gccgccAACTCATCAGTTCAACTGCCAGGCCCTGTCGAGTTAATTTTTCACCGCTATAAA‑CCTGGACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGa                                                                                                                                                                                                                                           <  2:79933/234‑1 (MQ=255)
             cTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAA‑CCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTg                                                                                                                                                                                                                                 <  1:182871/239‑1 (MQ=255)
                       cAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAA‑CCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CCC‑GTGCTCATCgcc                                                                                                                                                                                                                        >  1:129319/1‑236 (MQ=255)
                        aaCTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAA‑CCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTTTCGGATT‑CGC‑GTGCTCTTCGACgg                                                                                                                                                                                                                      >  1:63184/1‑239 (MQ=255)
                        aaCTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAA‑CCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GGGCTCATCGACg                                                                                                                                                                                                                       >  1:824596/1‑238 (MQ=255)
                                          gtttAATTTTTCACCGGTAAAAA‑CCTGCCGCCGGGGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCg                                                                                                                                                                                                    <  2:613449/236‑1 (MQ=255)
                                            gTAATTTTTCACCGCTATAAA‑CCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGa                                                                                                                                                                                                  <  1:194615/239‑1 (MQ=255)
                                             tAATTTTTCACCGCTATAAA‑CCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCCTCAACGTGGTGAAGC‑GTTTGCGGATT‑AGC‑GTGCCCATCGACGGACAAAACCTGGGTTGCgggga                                                                                                                                                                                                 >  2:528205/1‑237 (MQ=255)
                                                    tCACCGCTATAAA‑CCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGaa                                                                                                                                                                                          <  1:253369/239‑1 (MQ=255)
                                                    tCACCGCTATAAA‑CCGGCCACCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGaa                                                                                                                                                                                          <  1:784237/239‑1 (MQ=255)
                                                       ccGCTATAAA‑CCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTTCGTGAAATTTAAATCCAGCTCATCAACCGGGTGAAGC‑GTTTTCGGGTT‑TCC‑TGGCTACTCCCCGGGCAAAAACTGGTTTGCCGGaaatggggaaaa                                                                                                                                                                                       >  2:588115/1‑229 (MQ=255)
                                                        cGCTATAAA‑CCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGa                                                                                                                                                                                      <  1:142265/239‑1 (MQ=255)
                                                            ataAACCCTGCCCCCAGGTTTAATTGG‑ACAAAGGCCTACCGAAAGGGCCGGGTTTGGGTGGGTAATGGTCATTTCCCACAAATCATTAGCGGTGTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATAtt                                                                                                                                                                                  <  2:783658/239‑1 (MQ=255)
                                                             taAA‑CCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATtc                                                                                                                                                                                 <  2:290829/239‑1 (MQ=255)
                                                                 accctcccccaaggTTGATCGGAAAAAAGGGTTACCCAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATtcatc                                                                                                                                                                              <  2:1074989/226‑1 (MQ=255)
                                                                   cTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCaa                                                                                                                                                                            >  1:96485/1‑239 (MQ=255)
                                                                   cTGCACCCAGAGTGGATCGGAACAAAGGCTTACCGAAAGCGGCTGTTGTGGATGGGTAATTGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTTGTCGATTTTTGTCGCGGCTATGTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCaa                                                                                                                                                                            <  1:520652/239‑1 (MQ=255)
                                                                    ggcgcccAGAGTGTATCGTAAACAAGGCTTACCGGAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCTATAGCTGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTGTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAAc                                                                                                                                                                           <  1:39820/235‑1 (MQ=255)
                                                                      cACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACACATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTTCGGGAACTTTAAATCCAGCTCATCAACGCGGTGAAGC‑GTTTTCGGATTCCGG‑GTG‑TCATCGAGGGCCTAAACCCTGTTTGCCGGAAGGGGGAAAAGATATTCATCaaaac                                                                                                                                                                         >  2:863629/1‑236 (MQ=255)
                                                                      cACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGCAGCTGGAAAAGAAATtctacaaaaa                                                                                                                                                                         >  2:201162/1‑231 (MQ=255)
                                                                      cACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAGGCGGGAACaagaattctacaaaag                                                                                                                                                                         >  2:915772/1‑224 (MQ=255)
                                                                      cACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTCCCGGAAGGTGGAACAGATATTAATCCACAg                                                                                                                                                                         >  2:653332/1‑239 (MQ=255)
                                                                      cACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGGGGGTAAGC‑GTTTTCGGATT‑CGC‑GGGCTCATCGACGGAAAAAACCGGGGTTGCCGGAAGCTGGAAAAGAAAATAATCaaaaa                                                                                                                                                                         >  2:344589/1‑236 (MQ=255)
                                                                      cACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGATTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAg                                                                                                                                                                         >  1:444380/1‑239 (MQ=255)
                                                                         ccAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCa                                                                                                                                                                                                                    <  1:583743/193‑1 (MQ=255)
                                                                             agTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTTTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGGAGCTGGACCAGATATTCATCACACGATGTTaa                                                                                                                                                                  >  2:679855/1‑239 (MQ=255)
                                                                             agTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCCCATCGACGGCATAAACCTGGTTTTCCGGAAGCTGGAACAGATATTCACCAAAAGATGTTaa                                                                                                                                                                  >  2:905844/1‑239 (MQ=255)
                                                                                 gATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTg                                                                                                                                                              <  1:391342/239‑1 (MQ=255)
                                                                                  aTCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTTTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAAATGTTAAGTTGc                                                                                                                                                             >  2:512232/1‑239 (MQ=255)
                                                                                  aTCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGGGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTTTCGGATT‑CGC‑GGGCTCTTCGCCGGCATAAACCCGGTTTGCCGGAAGCTGGAACAGAAATTCATCcacaaagtttgggtttg                                                                                                                                                             >  2:647587/1‑226 (MQ=255)
                                                                                   tCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTTTCGGATT‑AGC‑GGGCTCATCGCCGGCATAAACCTGGt                                                                                                                                                                                                          >  2:583743/1‑193 (MQ=255)
                                                                                     ggAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAgg                                                                                                                                                          <  1:600676/239‑1 (MQ=255)
                                                                                     ggAACAAAGGCTTACAGAAAGCGCCTTCGGTGGATTGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGGCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAgg                                                                                                                                                          <  2:400927/239‑1 (MQ=255)
                                                                                     ggAACAAAGGCCTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAgg                                                                                                                                                          <  1:663216/239‑1 (MQ=255)
                                                                                     ggAAAAAAGGCTTACCGAAAGGGCCTTGTGTGGATGGGGTATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTTGGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAgg                                                                                                                                                          <  2:63184/239‑1 (MQ=255)
                                                                                       aaCAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTTGAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTTTCGGATT‑CGC‑GTGCTCATCGATGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGACTTTAATCAACAGCGGTTAAGTTGCGGGtt                                                                                                                                                        >  1:438625/1‑239 (MQ=255)
                                                                                       aaCAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGa                                                                                                                                                                                      >  1:584509/1‑209 (MQ=255)
                                                                                       aaCAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGGGGGGAAGC‑GTTGTCGGATT‑GGC‑GGGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAGCAGATATTCATCAACAAAAGTACAATTGCAGGtt                                                                                                                                                        >  2:216887/1‑239 (MQ=255)
                                                                                         cAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTTTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTaa                                                                                                                                                      >  1:487304/1‑239 (MQ=255)
                                                                                            aGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATa                                                                                                                                                   <  1:634049/239‑1 (MQ=255)
                                                                                            aGGCTTAACGAAAGCGCCTGCTGTTGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATa                                                                                                                                                   <  1:406781/239‑1 (MQ=255)
                                                                                                 tACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAAAAGATGTTAAGGTGCAGGTAAAAAAAGGag                                                                                                                                              >  2:1067270/1‑238 (MQ=255)
                                                                                                    ggtttaaggggcaggtgGATGGGTAATGGTCATTTCCCAAAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGaa                                                                                                                                           <  1:927302/225‑1 (MQ=255)
                                                                                                        aGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATAc                                                                                                                                        >  1:935997/1‑238 (MQ=255)
                                                                                                        aGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGCTAAATAAGGATGAAAAc                                                                                                                                        >  1:707240/1‑238 (MQ=255)
                                                                                                         tgtgttaaagaacgggggTTATGGTCTTTTCCCCAAAATCATTGGCGGTTTTAAAG‑GTGTGTTCGATTTTTGCCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGGCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATcccc                                                                                                                                      <  2:456059/224‑1 (MQ=255)
                                                                                                          ttttttaagggacggggTAATGGTTATTTCCCAAAAAATATTTGCGGTTTTAAAGTGTGTGG‑CGATTTTTGCCGGCGCTATTTTTTTCGCCGGCGGGAAATTTAAATCCAGCTCCACAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCa                                                                                                                                     <  2:1009695/225‑1 (MQ=255)
                                                                                                          cgcTTGCTGTGGATGGGTAAGGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTTTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCa                                                                                                                                     <  1:528008/239‑1 (MQ=255)
                                                                                                           gctttttttgGTTGGGTAATGGTTTTGTCCCAAAAAGTATTAGCGGTTTTAAAG‑GGGTGGTCTGTTTTTGTAGCGTCTATTTTTTGCGCCTGCGGGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATG‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAAAAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCa                                                                                                                                     <  2:576854/230‑1 (MQ=255)
                                                                                                           gccttttttgggtgggTAATGGTCCTTTCCCAAAAATTATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCa                                                                                                                                     <  2:835488/230‑1 (MQ=255)
                                                                                                            ccTTCTTTGGTTGGGTTATGGTCATTTCCCAAAAATCATTAGCGGTTTTAAAG‑GTGTTGTCGTTTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACg                                                                                                                                   <  2:129319/239‑1 (MQ=255)
                                                                                                            ccTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGCTATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCAc                                                                                                                                    >  1:1033080/1‑238 (MQ=255)
                                                                                                            ccTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCa                                                                                                                                     <  1:653332/237‑1 (MQ=255)
                                                                                                                      aTGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAAAACCCACGCCCAAAGgc                                                                                                                          >  1:857041/1‑238 (MQ=255)
                                                                                                                        gggTAATGGTTTTTTCCCAAAAATTATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGGGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCt                                                                                                                       <  2:356863/239‑1 (MQ=255)
                                                                                                                         ggTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATCAACCTGGTTTGCCGGAAGCTGGAACAGCTATTCATCACACGCTGTTACGTTGCAGGTTAAATAAGGATGAATACCCACCCCATAAGGCGCtc                                                                                                                      >  2:184799/1‑238 (MQ=255)
                                                                                                                                  tttttCCCAAAAATTATTGGGGGTTTTTAAG‑TGTTGGTCGATTTTTGGGCGGGTTTTTTTTTTCGGCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGc                                                                                                             <  2:247776/237‑1 (MQ=255)
                                                                                                                                  cATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGGGAAATTTAAATCCAGCTCAGCAACGTGGTGAAGC‑GTTGTCGGATG‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGc                                                                                                             <  1:277746/239‑1 (MQ=255)
                                                                                                                                    tttCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAAAAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAgg                                                                                                                           >  1:1009695/1‑223 (MQ=255)
                                                                                                                                     ttCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTg                                                                                                                                                              <  2:768785/187‑1 (MQ=255)
                                                                                                                                         ttgttaaagaggagggTTTTAAAG‑GTGGGTTCGATTTTTGGCGCGGTTATTTTTTTCGCCTGGGGGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATAtt                                                                                                      <  2:1019573/225‑1 (MQ=255)
                                                                                                                                                cttttgCGTTTTTAAAG‑GTTTGTTCTTTTTTTGTGCTGGTTTTTTTTTTCGCTTGCGGGAAATTTAAATCCAGCCCACCAACGTGGGGAAGC‑GTTGGCGGATT‑CGC‑GTTCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCtt                                                                                               <  2:392587/234‑1 (MQ=255)
                                                                                                                                                  ttAGCGGTTTTAAAG‑GTGTGGTTGATTTTTGTCGAGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCAGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGc                                                                                             <  1:45703/239‑1 (MQ=255)
                                                                                                                                                    aGCGGTTTTAAAG‑GTTTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGa                                                                                           <  1:588115/239‑1 (MQ=255)
                                                                                                                                                          tttAAAG‑GTTTGGTCGATTTTTGTCGCGGCTATTTTTGTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCa                                                                                      <  1:883080/238‑1 (MQ=255)
                                                                                                                                                               aG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCCAATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGaa                                                                                <  1:331835/239‑1 (MQ=255)
                                                                                                                                                                tggtttttccttttttttTCTGGGCTTTTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑GGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGaa                                                                                <  2:1031743/227‑1 (MQ=255)
                                                                                                                                                                    gtgGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGTATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCCCGCCAAAAGGGCCTGCGACATTGCCGAAATTCTGGCTGTCGACTTCAACGGaaaaa                                                                             >  2:72892/1‑236 (MQ=255)
                                                                                                                                                                    gtgGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTaa                                                                                                                                                      <  1:321669/165‑1 (MQ=255)
                                                                                                                                                                    gtgGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCCCGCCATAAGGCGCTGCGACATTGCCGATATTCGGGCTTTCGATCCCACCGGCAAGa                                                                             >  1:482673/1‑238 (MQ=255)
                                                                                                                                                                    gtgGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCTTAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGa                                                                             >  1:641609/1‑238 (MQ=255)
                                                                                                                                                                    gtgGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGGTATTCTGGCTTGCg                                                                                            >  1:1019573/1‑223 (MQ=255)
                                                                                                                                                                    gtgGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGa                                                                             >  1:567132/1‑238 (MQ=255)
                                                                                                                                                                    gcggTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTTCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGAGACAGGGCCGGTATTCTGGCTTGGGGACCCAACGGaaaaa                                                                             >  2:1086070/3‑236 (MQ=255)
                                                                                                                                                                     tgGTCGTTTTTTGGCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGAcc                                                                           <  1:11454/239‑1 (MQ=255)
                                                                                                                                                                     tgGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGAcc                                                                           <  1:216887/239‑1 (MQ=255)
                                                                                                                                                                     tgGTCGATTTTTGGCGGGGCTATTTTTTTCGCCTGGGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTAATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTAAAGTTGCAGGTTAAATAAGGATGAATA‑CCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGAcc                                                                           <  1:693326/238‑1 (MQ=255)
                                                                                                                                                                       gTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGCCAGTGCCGATATTCTGGCTTGCGATCTCAACGGCAATACCCg                                                                         >  1:206674/1‑239 (MQ=255)
                                                                                                                                                                             ttttGTCGCGGCTATTTTTCTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGGTAAATAAGGCGGAATACCCACGCCACAAGGCGCTCGGCCAGTGCCGATATCTTGGCTTGCGATCTCAAAGAAAAAACCCgaggcgg                                                                   >  2:208843/1‑233 (MQ=255)
                                                                                                                                                                                      ggCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTg                                                                                                                                                              <  2:472369/139‑1 (MQ=255)
                                                                                                                                                                                          ttttttttCCCCTGGGTGAAATTTAAACCCCGGCCAACAAC‑TTGTGAAGG‑GGTTTGCGGTT‑CGCGGTGCTAACCGCGGGCATAAACCTGGTTGGCCGGAAGCTGGAAAAGATTTTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATa                                                      <  2:306628/238‑1 (MQ=255)
                                                                                                                                                                                                ttCGCCTGCGTGAAATTTAAAT‑CAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGaa                                                                                >  2:523893/1‑206 (MQ=255)
                                                                                                                                                                                                ttCGCCTGCGTGAAATTTAAAT‑CAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGaa                                                                                <  1:523893/206‑1 (MQ=255)
                                                                                                                                                                                                        cGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTACATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTATGGCTTGCGATCTCAACGGAAAGACCCGTGTGGGCGTTGGCCGCATAACCAACTTGGGaa                                         >  1:273523/1‑238 (MQ=255)
                                                                                                                                                                                                        cGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGACAGACCCGGGTGTGAGTTGAGCGAATAAAACAATTGTGAAg                                        >  2:666308/1‑239 (MQ=255)
                                                                                                                                                                                                        cGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGaa                                         >  1:910099/1‑238 (MQ=255)
                                                                                                                                                                                                          tGAAATTTAAATCCAGGTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGc                                       <  1:367372/238‑1 (MQ=255)
                                                                                                                                                                                                          gtaaaTTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGGTT‑CGC‑GTCGTCATCGCACGCAAAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAATCAACTTGTGAAGc                                       <  2:935997/236‑1 (MQ=255)
                                                                                                                                                                                                          ggAAATTTAAATCCAGCTCATCAACTGGGTGAAGG‑GTTTGCGGATT‑CGC‑GTGATCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGc                                       <  1:899596/237‑1 (MQ=255)
                                                                                                                                                                                                               tttAAATCCAGTTCATCAACGTTGTGAAGG‑GTTTTCGGATT‑CGC‑GTGCTCCTCGACGGCATAAACCTGGTTGGCCGGAAGCTGGAACAGATTTTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCAt                                 <  2:60462/239‑1 (MQ=255)
                                                                                                                                                                                                                ttaaagtccgcttaacaACGGGGTGAAGCTGTTG‑CGGTTT‑CGC‑GTGCTCATCGGCGGCATAAACCTGTTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATTTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATa                                <  2:971134/224‑1 (MQ=255)
                                                                                                                                                                                                                     tcccacTCATCAACGTTGGGAAGG‑GTTTTCGGATG‑CGC‑GTGCTAATCGCCGGAATAAACCTGGTTTGGCGAAAACTGGAACAGTTATTCATCAACAGATGTTAAGTTGCAGGTTAAAGAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACgg                           <  2:326159/234‑1 (MQ=255)
                                                                                                                                                                                                                     tCCCGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACgg                           <  2:17829/239‑1 (MQ=255)
                                                                                                                                                                                                                       cAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGAt                         <  1:201162/239‑1 (MQ=255)
                                                                                                                                                                                                                          cTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTAAACGGAAAGACCCGGGGGTGCGTTGGGCGAATAAACAACTTTTGAAGCCAGCATAAACGGAAAGc                      >  1:1018003/1‑239 (MQ=255)
                                                                                                                                                                                                                                      gtgAAGG‑GTTGGCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAACTGggc           <  1:679855/238‑1 (MQ=255)
                                                                                                                                                                                                                                       tgAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGa                          >  1:751815/1‑222 (MQ=255)
                                                                                                                                                                                                                                       ggAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGa                          <  2:751815/221‑1 (MQ=255)
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                              
GTTAGGCGGGCAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAA‑CCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAG‑GTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGC‑GTTGTCGGATT‑CGC‑GTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAACTGGGCGGCAGAAAA  >  NC_000913/4069561‑4070035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A