Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I0 R1 140 172.9 3477528 97.9% 3404499 226.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,098,390 A→C 19.8% Y219S (TAC→TCC)  rhaS → transcriptional activator of rhaBAD and rhaT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,098,3900AC19.8% 375.0 / 21.2 176Y219S (TAC→TCC) rhaStranscriptional activator of rhaBAD and rhaT
Reads supporting (aligned to +/- strand):  ref base A (86/48);  new base C (2/37);  total (88/88)
Fisher's exact test for biased strand distribution p-value = 8.26e-12
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 177 total aligned reads displayed.

TACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCATATTGCGAATAATCAACTTCGTTCT  >  NC_000913/4098153‑4098626
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                            
     tCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGa                                                                                                                                                                                                                                         >  2:1638047/1‑238 (MQ=255)
       gACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAACCAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGTGGTGAATTGGGATGCCGTGGCGGATCCTTTTTCTCTTTCACTGCGTACTCCACATCCGCTCCTTACGCAGCAAACGGTACTG‑ACGCCTCAGCGATCCCTgcaa                                                                                                                                                                                                                                       >  1:954252/1‑235 (MQ=255)
            cagtccgcgTGATATTGTTTAGTCAATTCCTGCCCTTAGTGGATAAAAGCGGTTGCCAGAACACCCTGAAAAACAGCTCACCACGTCCCATTATGCGTCTGGCCTGGTTG‑GAGGATCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATAAATTTCCCTTTCCACTGCGTACGCTAGACCGTCAGCTTAAGCAACAAACGGCCGTG‑ACGCCTCAGCGATCCCTGAACCGCCTg                                                                                                                                                                                                                                 <  1:1490340/234‑1 (MQ=255)
                              ttATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCCCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGa                                                                                                                                                                                                               <  2:1266224/239‑1 (MQ=255)
                                    aaTTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCt                                                                                                                                                                                                          >  1:454154/1‑238 (MQ=255)
                                      ttACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCt                                                                                                                                                                                                       >  2:1722856/1‑239 (MQ=255)
                                      ttACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCt                                                                                                                                                                                                       >  2:679018/1‑239 (MQ=255)
                                      ttACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTAAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGAc                                                                                                                                                                                                              <  2:238220/232‑1 (MQ=255)
                                           gCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGc                                                                                                                                                                                                   >  1:306176/1‑238 (MQ=255)
                                              ctTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGCTACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCCGCTACGCcaca                                                                                                                                                                                               >  1:856402/1‑239 (MQ=255)
                                                 gctgcGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCg                                                                                                                                                                                            >  2:1691664/1‑239 (MQ=255)
                                                 gctgcGTAAAAGCAGTTTGCAGGAGAAACTGGAAAACAGAGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTTTCTTTAACTGAGTACGCCACATCAGCAGCTTAATCAACAAACGGGCATG‑ACGCCTCAGCGCTACCAGCAACGCCTGCTACTGATGAAAGCCCGaaccccgctacccccccacg                                                                                                                                                                                            >  1:1553024/1‑220 (MQ=255)
                                                      gTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATGGGGATGCCGTGGCGAATCAATTTTCTCTTTTACTGCTTACGCTACATCGGCAGCTTAAGCAGAAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGc                                                                                                                                                                                        <  2:1338760/238‑1 (MQ=255)
                                                                tttGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCGGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTg                                                                                                                                                                             >  2:928110/1‑239 (MQ=255)
                                                                tttGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTg                                                                                                                                                                             >  2:1077235/1‑239 (MQ=255)
                                                                tttGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTg                                                                                                                                                                             >  1:709946/1‑239 (MQ=255)
                                                                  tGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGa                                                                                                                                                                            >  2:927540/1‑238 (MQ=255)
                                                                  tGCAGGAGAACCTGAAAAACAGCGCATCCCGTCTCAACTTTCTTCTGGCCTGGGTG‑GAGGACCATTTTGCCGATGGGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCCCTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGAc                                                                                                                                                                           <  1:564991/239‑1 (MQ=255)
                                                                   gCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATAAATTTTCTCTTTCACTGGGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACa                                                                                                                                                                          <  2:1459551/239‑1 (MQ=255)
                                                                   gCAGAAGAACCTGGAAAACGGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCGG‑GATGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACa                                                                                                                                                                          <  1:871449/239‑1 (MQ=255)
                                                                    cAGGAGAACCTGGAAAACAGCGCATCTCGTCTCAACTTGCTTCTGGCCTGCGTG‑GAGGACCTTTTTGCCGAGGGGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACa                                                                                                                                                                          <  1:1116259/238‑1 (MQ=255)
                                                                          aaCCTGGAAAACAGCGCATCACGTCTCAAC‑TGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTa                                                                                                                                                                   >  2:5728/1‑238 (MQ=255)
                                                                            ccTGGAAAACCGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCCGCTTAAGCAGCAAACGGCACTG‑CCGCCTCAGCGATACCTGAACCGCCTGCGGCTGATGCAAGCCCTACCTCTGCTATGCCACAGCCAGGCCAGCGCTACTGACATCGCCTAt                                                                                                                                                                  >  1:670831/1‑238 (MQ=255)
                                                                            ccTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTAt                                                                                                                                                                  >  2:1655918/1‑238 (MQ=255)
                                                                            ccTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTAt                                                                                                                                                                  >  1:1513191/1‑238 (MQ=255)
                                                                                aaaaaCAGCGACTCACGCTCCAACTGGCTTCTGGCCGGGGTG‑GAGGACCATTTTGCAGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCCCGGCGTACGCAACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGc                                                                                                                                                                                        <  1:738042/211‑1 (MQ=255)
                                                                                 aaaaCAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCtgt                                                                                                                                                            >  2:1388532/1‑239 (MQ=255)
                                                                                       gcgcATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTc                                                                                                                                                      >  2:742135/1‑239 (MQ=255)
                                                                                       gcgcATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTc                                                                                                                                                      >  1:112527/1‑239 (MQ=255)
                                                                                         gcATCACCTCCCAACTTGTTCCTGGCCTGGCGG‑GAGGACCATTTTGCCGATGAGGGGAATTGGGATGCCGTGGCGGATAAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAGGCAGCAAACGGGACTG‑ACGCCTCAGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAg                                                                                                                                                    <  1:773608/239‑1 (MQ=255)
                                                                                         ccagcACGTCTAAACTGGTTTCGGGCCTGGCTG‑GAGGACGATTTTGCCGATGAGTTGAATGGGGATGCCGTGGCGGAGCAATTTTCTCTTTCACTGCGTCCGCTACTGCGGCATCTTAGACAGCAAACGGGACTG‑ACGCCTCAGCGATACCTAAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGAtt                                                                                                                                                       <  1:153629/232‑1 (MQ=255)
                                                                                         acagcACGTCTCAACTGTCGTCTGGCATGGTTGTGAAG‑CAGTGTTGCCGATGATGAGAATTGGGTGGCCGTGGGGAATTGAGTTTCTCTTGCCCTGGATAGGCGAAATGGGCTGCTTGAACAGCAATGGGGGATG‑ACGCCCTTGTTATAGCCGCACCGCCTGCGACTTATGAAGGCCCGACGTCTGCTACGCCACAGCGAGGCCAGCGTTACTGAAATCGCCTATCGCGGTTGATTCAg                                                                                                                                                    <  1:837540/235‑1 (MQ=255)
                                                                                          cATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACt                                                                                                                                                                              >  2:738042/1‑212 (MQ=255)
                                                                                          cATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGc                                                                                                                                                   >  2:797653/1‑239 (MQ=255)
                                                                                                gtcgcagctgtcTTCGGGGCTGGCTG‑GGGGCCCATTTTGCCGAGGGGGTGAATGGGGATGCCGTGGCGGAACAATTTTCTGTGTCGCTGCGTACCCTACAGCGGCAGTTTAAGCACAAAACGGGACGG‑ACGCCCCAGCGATACCTGACCCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGt                                                                                                                                             <  1:263859/228‑1 (MQ=255)
                                                                                                gTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGt                                                                                                                                             <  2:1311522/239‑1 (MQ=255)
                                                                                                    cAACTGGCTTCTGGCCTGGTGG‑GAGGACCTTTTTGCCGATGAGGTGAATGGGGATGCCGTGGCGGATCAATTTTCTCTTCCACTGCGTCCGCTACACCGGCAGCTTAAGCAGAAAACGGGACTG‑CCGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAAcc                                                                                                                                         <  1:1077235/239‑1 (MQ=255)
                                                                                                     aaCTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAAcc                                                                                                                                         >  2:577442/1‑238 (MQ=255)
                                                                                                         tGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCCGCTTAAGCAGCCAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGCCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACttt                                                                                                                                    >  2:508836/1‑239 (MQ=255)
                                                                                                                 gcctggcTG‑GCGGACCATTTTGCCGATGAGGTGAATTGGGATTCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCCACATCGGCAGCTTTAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGGACCGCCTGCGACTGATGAAAGCCCGACATCTGCTCCGCCACAGCCAGGCCATCGTTACTGCCATCCCCTTTCGCTGTGGATTCGACGCCAGGAACCACTTTTCCACCCt                                                                                                                            >  1:1011593/1‑239 (MQ=255)
                                                                                                                     ggctg‑gAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGCCTG‑ACGCCTCAACGATACCTGAACCGCAAGCGACTACTGAAAGCCCGACATCTGCTACGCCACAGCGAAGCCAGCGTTACTAACAGCGCCCCTCGCTGTTGATTCAGCTAAACTAAACCCTTTTCGACGcctct                                                                                                                         >  1:330490/1‑234 (MQ=255)
                                                                                                                      gctg‑gAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATTAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCAACGCttttt                                                                                                                        >  1:158589/1‑238 (MQ=255)
                                                                                                                           gagtaCCATTTTGCCGTTGAGGGGAATTGGGATGCGGTGGCGGTTCAATTTTCTCTTTCACGGCGTCCCTTCCACCGGCGGCTGAGGCACCAAACGGGATTG‑ACGCCTCGGCGATACCGGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGcc                                                                                                                    <  1:882780/238‑1 (MQ=255)
                                                                                                                           gaggcCCATTTTGCCGATGGGGTGAATTGGGATGCGGTGGCGGATCATTTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATCCCTAAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGcc                                                                                                                    <  1:1638047/238‑1 (MQ=255)
                                                                                                                           gaggaCCATTTGGCCGATGAGGTGAATTGGGATGCCGGGGCGGATCAATTTTCTTTTTCACTGCGTACGCTTCATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGcc                                                                                                                    <  2:1441180/238‑1 (MQ=255)
                                                                                                                           accacccATTTGGCCGATGAGGTGAATGGGGATGCCGGGGCGGATCATTTTTCTCTTTCCCTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑CCGCCTCAGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGcc                                                                                                                    <  1:124585/233‑1 (MQ=255)
                                                                                                                                 ctttttGCCGATGAGGTGAATTGGGATGCCGTGGCGAACCATTTTTCTCTTCCCCTGCGTCCGCGCCATCGGCAGCTTAAGCAGCAACCGGGACTG‑ACGCCTCAGCGATCCCGGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGtt                                                                                                             <  2:417430/237‑1 (MQ=255)
                                                                                                                                 cATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGtt                                                                                                             >  2:761414/1‑239 (MQ=255)
                                                                                                                                           aTGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTaa                                                                                                          >  2:124585/1‑232 (MQ=255)
                                                                                                                                                 tGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACcgcg                                                                                              <  2:1262281/238‑1 (MQ=255)
                                                                                                                                                 tGAATTGGGATGCCGTGGCGGACCAATTTTCTCTTCCACGGCGTCCGCTACATCGGCAGCTTAAGCAGAAAACGGGACTG‑ACGCCTCAGCGATCCCGGACCCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACcgcg                                                                                              <  1:1722856/238‑1 (MQ=255)
                                                                                                                                                 tGAATTGGCATGCCGTGGCGGATCAATTTTCACTTTCACGGCGTACGCTACAGCGGCAGCTTAAGCAGAAAACGGCACGG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACcgcg                                                                                              <  2:1418143/238‑1 (MQ=255)
                                                                                                                                                  gAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTg                                                                                            >  1:1440470/1‑239 (MQ=255)
                                                                                                                                                  gAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTAATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTg                                                                                            >  2:293813/1‑239 (MQ=255)
                                                                                                                                                    atgggaaTGCCGTGGCGGATAACTTTTCTCTTTCACTGCGTACGTAACAGCGGCACTTTAGGCACCAAACGGGCCTC‑ACGCCGCAGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGat                                                                                          <  1:486081/233‑1 (MQ=255)
                                                                                                                                                     ttGGGATGCCGTGGCGGATCAATTTTCTCTTTCCCTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGata                                                                                         <  2:454154/239‑1 (MQ=255)
                                                                                                                                                             ccGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAg                                                                                 >  2:388982/1‑239 (MQ=255)
                                                                                                                                                             ccGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAg                                                                                 >  2:1567087/1‑239 (MQ=255)
                                                                                                                                                                 ggCGGATCAATTTGCTCTTCCTCCGCTTCCGCCACAGCGCCAGCTAAGGCAGAAAACGGACCGG‑ACCCCTCAGCGACCCCGGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGa                                                                              <  1:5728/238‑1 (MQ=255)
                                                                                                                                                                      aaaaaTTTTCTCTTGCACTGCGTCCGCTACATCGGCCGCTTAAGCAACAAGCGGGACTG‑ACCCCTCGGCGATCCCTGACCCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGa                                                                         <  1:1655918/235‑1 (MQ=255)
                                                                                                                                                                      aTCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGAt                                                                        >  2:960891/1‑239 (MQ=255)
                                                                                                                                                                          aTTTTCTCGTCCCCTGCGTCCGCTAAACCGGCAGCTTAAGCGGCAAACGGGACTG‑CCTCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCt                                                                    <  1:921598/239‑1 (MQ=255)
                                                                                                                                                                                   ttCACTGCGTACGCTACATCGGCAGTTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGt                                                                                                     <  2:1094255/197‑1 (MQ=255)
                                                                                                                                                                                   ttCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAAt                                                           >  1:777663/1‑239 (MQ=255)
                                                                                                                                                                                   ttCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCCCAGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAAt                                                           <  1:1311409/239‑1 (MQ=255)
                                                                                                                                                                                          cgtcccctcctacGGCATCTAAAGCACCAAACGGGACGC‑ACGCCTCCGCGATCCCTAAACCGCCTGCGACTGATGAAAGCCCGACATCTGGTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGa                                                    <  1:942214/227‑1 (MQ=255)
                                                                                                                                                                                          cGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGa                                                    >  2:189104/1‑239 (MQ=255)
                                                                                                                                                                                          cGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGACTTTAACTGGTCACCGCGTGa                                                                                           >  2:347579/1‑200 (MQ=255)
                                                                                                                                                                                            tACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGaa                                                   >  2:95185/1‑238 (MQ=255)
                                                                                                                                                                                               gCTACACCGGCATCTAAAGCGGCAACCGGGACTG‑ACGCCTCGGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAAtctt                                               <  2:856402/239‑1 (MQ=255)
                                                                                                                                                                                                 gaCATCGGCAGCTTAAGCAGCAAACGGGACTG‑GCGCCTCAGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAAtcttct                                             <  2:1449653/238‑1 (MQ=255)
                                                                                                                                                                                                 aatggacagtgCTTAACCAGCAAACGGACCCG‑CCCCCCCCGCTACACCGGACCCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCATCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAAtcttct                                             <  1:952906/229‑1 (MQ=255)
                                                                                                                                                                                                    tgtcgcacgctaacacagcaaCCGGACTGAACGCCACGGCGTTCCCTGAACCGCCTGCGCCTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCa                                           <  1:1341776/220‑1 (MQ=255)
                                                                                                                                                                                                    atgggccgtttAAGGCGCAAACGGGCCTG‑CGGCCTCTGCGATCCCAGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCaa                                          <  1:928110/230‑1 (MQ=255)
                                                                                                                                                                                                    aTCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGCGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCa                                           >  1:1414230/1‑238 (MQ=255)
                                                                                                                                                                                                    aTCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTTTGGATTCAGCGACAGTAACCACTTTTCGCCGCTTTTTCGCCGAGTGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATATTCTCaa                                          >  1:1038393/1‑239 (MQ=255)
                                                                                                                                                                                                    aTCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAgg                                                                                <  2:249644/201‑1 (MQ=255)
                                                                                                                                                                                                    aTCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAgg                                                                                >  1:249644/1‑201 (MQ=255)
                                                                                                                                                                                                      cGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACa                                                                                                                                                                          >  2:1548619/1‑109 (MQ=255)
                                                                                                                                                                                                      cGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACg                                        >  2:1001955/1‑239 (MQ=255)
                                                                                                                                                                                                      cGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACg                                        >  2:80229/1‑239 (MQ=255)
                                                                                                                                                                                                         cAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGcc                                                                                                                                                                                                  >  2:903176/1‑82 (MQ=255)
                                                                                                                                                                                                          acctaaaGCAGAAAACGGGACGG‑ACCCCCCGGCGATACCGGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTAt                                     <  1:1567087/233‑1 (MQ=255)
                                                                                                                                                                                                          aGCTGAGGCAGAAAACGGGACTG‑ACGCCGCAGGGATACCGGAGCCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTAt                                     <  1:1353604/238‑1 (MQ=255)
                                                                                                                                                                                                             ttAAGCACCAACCGGGACCG‑ACGCCTCAGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTAtt                                    <  1:190769/236‑1 (MQ=255)
                                                                                                                                                                                                             taaaGTAGCAAACGGGACTG‑GCGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGt                                 <  1:342449/237‑1 (MQ=255)
                                                                                                                                                                                                                agcagcAAACGGGACTG‑ACGCCTCAGCGATCCCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACg                              <  2:485464/239‑1 (MQ=255)
                                                                                                                                                                                                                agaaacaAGCGGGCCTG‑ACGCCCAGGCGAACCCTAAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACg                              <  2:310945/234‑1 (MQ=255)
                                                                                                                                                                                                                   agaaaaCGGGAATG‑ACGCCCCAGCGTTACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGcc                            <  2:466135/235‑1 (MQ=255)
                                                                                                                                                                                                                     caAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTAttt                                   >  2:952952/1‑229 (MQ=255)
                                                                                                                                                                                                                      aaaCGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCatat                        >  1:673701/1‑239 (MQ=255)
                                                                                                                                                                                                                      aaaCGGGACGG‑ACGCCTCAGCAATCCCTGACCCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCatat                        <  1:80229/239‑1 (MQ=255)
                                                                                                                                                                                                                          gggccctacgcccTCGGCGATCCCGAATCCGCATGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCATATTGc                     <  1:742135/228‑1 (MQ=255)
                                                                                                                                                                                                                            gACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTCTTTGTACGCCATCTTGCGaa                  >  1:139811/1‑239 (MQ=255)
                                                                                                                                                                                                                                g‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCATATTGCGaataat              <  2:1513191/239‑1 (MQ=255)
                                                                                                                                                                                                                                  cccctccAGCGAACCCTGAACCGCCTGCGGCTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCATATTGCGaataat              <  1:1001955/232‑1 (MQ=255)
                                                                                                                                                                                                                                   cGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCATATTGCGAATAATCa            <  2:112527/239‑1 (MQ=255)
                                                                                                                                                                                                                                       tCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTGACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCCTATTGCGAATAATCAACt         >  1:609501/1‑238 (MQ=255)
                                                                                                                                                                                                                                         aGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCaa                                          <  2:624785/203‑1 (MQ=255)
                                                                                                                                                                                                                                         aGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCaa                                          >  1:624785/1‑203 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                            
TACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTG‑GAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCGTACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTG‑ACGCCTCAGCGATACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACTGACATCGCCTATCGCTGTGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCGTGATATTCGCCAGGGACGGGATGGCTTTCTGCAATAACGCGAATCTTCTCAACGTATTTGTACGCCATATTGCGAATAATCAACTTCGTTCT  >  NC_000913/4098153‑4098626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A