Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F19 I0 R1 47 161.4 2832088 96.9% 2744293 271.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,296,154 T→C 10.6% intergenic (+361/+283) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,1540TC10.6% 70.6 / 3.6 43intergenic (+361/+283)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
Reads supporting (aligned to +/- strand):  ref base T (19/19);  new base C (2/3);  total (21/22)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.23e-01

CGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCC  >  NC_000913/4295870‑4296432
                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                      
cGCCAGACAGGGGAATAGCCTGATTTAGCGTGATTTTGTAGGGCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCg                                                                                                                                                                                                                                                                                    <  1:568277/289‑1 (MQ=21)
atccAGACAGCGAAATAGCTTGATTGAGTGTGATTTTGTAGGTCGAGTAAGGCTTTTATGCCGCATCCAACATCAACGCCGGCT‑GGGACGCTTAACGCGTCTTATCAGGCCTACGCCAAACAGCTCAATAGCCTAATTTAGCGTGATTTTGTAGGGCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGAAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCg                                                                                                                                                                                                                                                                                    <  1:1004306/287‑1 (MQ=11)
    gaacatcagattAGCCTGATTTGTCGATATTTTTTGGGTAGGATAAGCGGTTTATGCCGCGTCGGGAATGACGGCTTGAT‑GCGACGCTAAACGCGTCTTATCAGACCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATc                                                                                                                                                                                                                                                                                <  2:1377597/278‑1 (MQ=11)
           gcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGCTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATc                                                                                                                                                                                                                                                                         >  2:310880/1‑289 (MQ=21)
               tAGCCTGATGTAGCGTGATTTTATAGGACGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGAGTCTTATCAGGCCTAGGCCAGACAGCGCAATATCCTGATTTCGCGTGAATTTGTAGGACGGATAAGGAGTTTACGCCCCATCCGACATCAACTCCTGATCCGACGCTGACAGTGTCATATCAGGCCAATGCCAGCCAGTGCAATACCCTGCTTACCCGTGATTTGGAACAGCGGGTACGGTGATTATGCCGCAGCCGACA‑CAACg                                                                                                                                                                                                                                                                     >  2:1053383/1‑288 (MQ=2)
                  ccTGCTTTCGCGTGATTTTTTAGTTTGGATAAGGGGTTGATGCCCGATCAGACATCAACGCCTGAT‑GCGAGGCTTACCGCGTCGTATCAGGCCTACGCCAGAAAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGTATAAGGCGTTTCCGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGcc                                                                                                                                                                                                                                                                   <  2:297177/288‑1 (MQ=11)
                    tGATTTAGCGTGCTTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAAGAGCCTGATTTCGCGTGCTTTTGTAGGTCGGATAACGCGTTTACGCCGCATCAGACATCAACGCCTGATGCGACGCTTTCCGCGTCTTATCACGCCTACGCCAGCCAGCGCCATAGCCTGATTTAGCCTGTAGTTGTAGGTCGGATACGGCGTTTATGTCGCATCTAACATCCACGCCCGa                                                                                                                                                                                                                                                                >  2:726995/1‑289 (MQ=11)
                     gATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAATTAGCGTCATTTTGTAGGTCTGATAAGGCGTTTATGCCTCATCCGACATCAACGCCTGAt                                                                                                                                                                                                                                                               >  1:1373926/1‑289 (MQ=25)
                      gttaggcttaagttgttgggtggtaTACGGCGTTTATGGCGGGTCCGACGTCAACGCCCGAG‑GCGACGCTTAACGCGTCTTATCAGGCCGACGCCAGAAAGCGCAATAGTCTAATTTAGCGTGAGTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCGGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATg                                                                                                                                                                                                                                                              <  2:1171903/265‑1 (MQ=11)
                      aTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGCCGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAATTAGCTGGATTTTGTCGATCGGATCATGGCTTCATGCCCCAGTCCACCTCAACGCCTTAt                                                                                                                                                                                                                                                               >  2:1087948/1‑288 (MQ=11)
                       tttAGTGTGATTTTGGAGGTCGGATAAGGCGTTTCTGCCGCATCGAACATGAACGCCTGAT‑GCTACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGAGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGGTAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGc                                                                                                                                                                                                                                                             <  2:996537/289‑1 (MQ=255)
                                 ttttGTAGGTCGAATAGGGCGTTTAGGCCGCATCCACCACCAACGCC‑GATGGCGACGCTTAACGCGTTTTATCAGGCCTAGGCCAGACAGCGCAATAGCCTTATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTGACGCCGCATCCGACATCAACGCCGGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTaa                                                                                                                                                                                                                                                    <  1:697192/288‑1 (MQ=11)
                                               tAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGc                                                                                                                                                                                                                                     <  1:720260/289‑1 (MQ=37)
                                               tAAGACGTTTCTGCCGCATCCGACATCATCGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCTTGATTTAGCGTGATTTTGTAGGTCGGAGAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGc                                                                                                                                                                                                                                     <  1:754759/289‑1 (MQ=255)
                                               gatggCGTTTACTCCGCGTCAGACACCACGGCCGGAT‑GCTACGATTGACGCGTCTTATCAGGCCTACGCCAGACAGCGAAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGc                                                                                                                                                                                                                                     <  2:1177963/286‑1 (MQ=11)
                                                       ttATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCCAATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCa                                                                                                                                                                                                                             >  1:1341586/1‑289 (MQ=37)
                                                        tATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAg                                                                                                                                                                                                                            >  1:898770/1‑289 (MQ=37)
                                                        tATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCATAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCTTGATGCGACGCTTGCAGCGTCTTATCAGGCCTACGCCATCCAGCGCTATTGCCTGATTTAGCGTGATTTCGTATGTCGGCCAATGCGTTTCTGCCGCCTCATACATCTATGCAGGTTCCGACGCTTACCGCGTCTTATccgcccgacctcac                                                                                                                                                                                                                            >  2:1032153/1‑276 (MQ=11)
                                                         atgcccgcgaggaaatcgcgacttGAG‑GCGAAGCTTAAGGCGTCTTATCAGGCCTACGCTGGACGGAGCAATGTCCTGATTTAGCGTGATTTTGTAGGTCGGATGAGGCGTTTCCGCCGCATCCGACATAAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGa                                                                                                                                                                                                                           <  2:1078179/266‑1 (MQ=11)
                                                         aTGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGa                                                                                                                                                                                                                           <  1:310880/289‑1 (MQ=37)
                                                               cATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAgcg                                                                                                                                                                                                                      >  2:752269/1‑288 (MQ=35)
                                                                                tGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCg                                                                                                                                                                                                    <  1:752269/289‑1 (MQ=35)
                                                                                                    tctgtaagggcttaagacAGACAGTGCAGTAGCTGTGTTCAGAGTGAATTTGTGGGTCGTGTAAGGTGATTACGCCGGAAACTAGAGAAATGCCGGATGTGAGGCTTGCCGCGTCTTATAAGGCAGACGCCAGACAGCGCAGTGGCCTGATTTAGCGTGATTTTGTAGGTCGCATAAGGCGTTTATGCCGCAGCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAt                                                                                                                                                                                  <  2:123442/271‑1 (MQ=2)
                                                                                                    tCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATa                                                                                                                                                                                 >  2:1129741/1‑289 (MQ=33)
                                                                                                     tttaccgggCCTACGCCAGCCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCACCTCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAACGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATaa                                                                                                                                                                                <  1:103884/282‑1 (MQ=16)
                                                                                                             gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTCGCGTCATTTTGTAGGTCGGATAATGCGTTTATGCCGAATCCGACATCAACGTCTGCTTCGACGCTTACCGCGTCTTATCAGGCCTACCACATACAGCGCAACAGCCTGATTAAGCGTGACTTTGTAGGCCGGACACGGCGttca                                                                                                                                                                        >  2:86851/1‑287 (MQ=11)
                                                                                                                  cGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGc                                                                                                                                                                                                                                     <  1:571128/223‑1 (MQ=34)
                                                                                                                  cGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGc                                                                                                                                                                                                                                     >  2:571128/1‑223 (MQ=34)
                                                                                                                       gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTCGCGTGATTTTGTAGGTCGGATAAGACGTTTATGCCGCATCCGACCTCACCGCCTGATGCGACGCTTAACGCGTCTTATCAGTCCTCCGCCAGCCAGCGCAACAACCTTATTTACCTTGATTTTGTAGGTCGAATCAGTCGttacctctccact                                                                                                                                                               >  2:347342/1‑277 (MQ=11)
                                                                                                                       gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCAGCATCCGACATCAACGCCTGATGCGACGCATGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTCTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGATAGCGCAATAGACTGATTTAGCTTGATTTTGTAGGTCGGATAAGGCGTTTCACCCGCATcc                                                                                                                                                              >  1:1073941/1‑289 (MQ=255)
                                                                                                                            cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTATGCCAGACAGCGCAATATCCTTATTTCGCGTGATTTTGTAGGTCGGATAACGccgttaccccccacccgcca                                                                                                                                                          >  2:880979/1‑269 (MQ=11)
                                                                                                                            cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCATACAGCGCAATAGCCTGCTTTCGCGTTATTCTGTAGATCGGATACGGCGTTTAGTCTGCATGCGACa                                                                                                                                                          >  2:1040884/1‑288 (MQ=11)
                                                                                                                                       gaataaGCGTGACTTTGTAGGGCGAATAAGGCGTTTACGCCGCAGACGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATACTAGACATCGCAATCGCCTGATTTAGCGTGATGGCGTAGGTCGGATACTGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACTCTTAACGCGTCTTACCAGGCTTACGCAAGACAGAGAAATAGCCTGACTTAGCGTTCGTTTGTATGTCGGTTAACGCGTTTAGGCCGccttagtcacgcatgcctg                                                                                                                                                >  2:1161881/6‑269 (MQ=11)
                                                                                                                                                                          tACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAgg                                                                                                                                                                                        >  1:369145/1‑212 (MQ=34)
                                                                                                                                                                          tACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAgg                                                                                                                                                                                        <  2:369145/212‑1 (MQ=34)
                                                                                                                                                                                                                      cTTATCAGGTCTACGCCAGACAGCGCAATGGCCTGTTTTAGCGGGATTTGTTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATAAACGCCGGATGGGACGCTTGACGCGGCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATaa                                                               <  2:461087/289‑1 (MQ=11)
                                                                                                                                                                                                                                                                   aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGCCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGTTCCGCCGCTTACGGCGTCTTATCAGGCCTACCCAAGACAGCGCATTAGCCTGTTTTACCTTGATTTTGTAGGTTGGATAAGGCGTTTCCCCCGCTTCAGCACTCaatgccgtatgctcgcttgg                   <  2:465844‑M2/288‑21 (MQ=255)
                                                                                                                                                                                                                                                                         tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCaatgcctgatgcgacgcttgccgcg              <  1:652853‑M2/287‑26 (MQ=255)
                                                                                                                                                                                                                                                                              cGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCaatgcctgatgcgacgcttgccgcgtcttatc       <  1:202112‑M2/289‑33 (MQ=255)
                                                                                                                                                                                                                                                                              cGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACCTCAACGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGCCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCCGATACGGCGTTTACGCCCCATCCGACCTCcatgcctgctgctacgcttgccgcgtcttat        <  2:584156‑M2/288‑32 (MQ=255)
                                                                                                                                                                                                                                                                                  tAAGGCGTTTACGCCGCAGCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCaatgcctgatgcgacgcttgccgcgtcttatcaggc   >  1:264169‑M2/1‑253 (MQ=255)
                                                                                                                                                                                                                                                                                   aaGGAGGTTCTGGCGCTTGCGACGTCAGCGCCTGATGTGACGCTTGCTGCGTCTTATCAGGCCTACGCCAGACAGCGCAAGACCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGGCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCaatgcctgatgcgacgcttgccgcgtcttatcaggc   >  2:674866‑M2/1‑252 (MQ=255)
                                                                                                                                                                                                                                                                                    aGGCGTGTTCGCCGCATCCTGCATCAACGCTTGATGCGAGGCTTGCCGCGTCTTATCAGGCCTGCGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCaatgcctgatgcgacgcttgccgcgtcttatcaggcc  >  2:896062‑M2/1‑251 (MQ=255)
                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                      
CGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCC  >  NC_000913/4295870‑4296432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A