Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F28 I0 R1
|
54 |
59.4 |
1320120 |
91.9% |
1213190 |
218.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,765,515 |
A→G |
26.1% |
S1112G (AGT→GGT) |
rhsA → |
Rhs protein with putative toxin 55 domain, putative polysaccharide synthesis/export protein, putative neighboring cell growth inhibitor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,765,515 | 0 | A | G | 26.1%
| 53.5
/ 2.5
| 54 | S1112G (AGT→GGT) | rhsA | Rhs protein with putative toxin 55 domain, putative polysaccharide synthesis/export protein, putative neighboring cell growth inhibitor |
| Reads supporting (aligned to +/- strand): ref base A (25/12); new base G (12/4); total (37/17) |
| Fisher's exact test for biased strand distribution p-value = 7.48e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AACGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGAGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCG‑CCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGC > NC_000913/3765296‑3765734
|
aaCGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGAGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCCGTGTGGGGTTCCCG‑CCGGTGCTGGTGCAGATGCTCGACCGGCTGGCAAGTGAAAT‑C‑CTGGCTGCCCGGGTGGGGGGGGaa > 1:120227/1‑228 (MQ=255)
aaCGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGAGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGGGGGGTTCCCG‑CCGGCGCTGGTGCAGATGCTCGACCGGCGGGGAAGGGAAAT‑C‑CTGGGTGACGGGGGGGGTggggga > 1:579595/1‑226 (MQ=11)
aaCGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGAGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGGGTGGTGTTCCCG‑CCGGTGCTGGGGCAGATGCTCGCCCGGCTGGACAGTGAAAT‑C‑CTGGCTGCACGGGTGAGGGAGGaa > 2:619418/1‑228 (MQ=255)
aaCGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGAGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGGGGGGTGTTCCCG‑CCGGTGCTGGGGCAGATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGCCCGGGGGAGGGGGGaa > 1:248423/1‑228 (MQ=255)
cGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGAGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGGGTTCCCG‑CCGGTGCTGGTGCAGCTGCTCGGCCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGGGGGTGGGGAAAg > 2:951/1‑228 (MQ=255)
cAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGAGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGGGTGGTGTTCCCG‑CCGGTGCTGGTGCGGCTGCTCGACCGGCTGGAAAGGGAAAC‑C‑CCGGCCGGCCGGGGGGGTGAGGAAAgcc > 1:382664/1‑227 (MQ=11)
cAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGAGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCCTCAGCAGTCCGGCGGCGAAAACGGTGGCCGTGCGGGGTTCCCG‑CCGGTGCTGGGGCAGATACGTGACCCGCTCGCAAGGGAACC‑C‑CTGGGTGACCGGGGGGGTGGGGaaaagc > 1:377321/1‑224 (MQ=11)
cAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGAGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCCCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCG‑CCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGGAAT‑C‑ATGGCTGACCGGGTGAGTGAGGAAAgcc > 2:460698/1‑227 (MQ=21)
cAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGAGTTGAAACCGCCACCAGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGGGTTCCCG‑CCGGTGCTTGTGCAGAGGCTCGACCGGCTGGGAAGGGAAAT‑C‑CAGGCTTACCGGGGGGGGGAGGAAAgccc > 1:267067/1‑227 (MQ=11)
aaCCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGAGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCG‑CCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGGGGGTGCGGAAAgccgcc > 2:208097/1‑227 (MQ=21)
gCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGAGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGGGTGGTGTTCCCG‑CCGGGGCTGGTGCAGATGCTCCACCGGCTGGAAAGGGGAAG‑C‑CTGGCTGCCCGGGTGGGGGAGGAAACCCCCGcctggc > 1:366746/1‑228 (MQ=11)
tttATCAGCCGGGGAGCTTCACGCCACTCATCAGAGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCG‑CCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGAGAGTGAGGAAAGCCGCCGCTTGCTGGCATCGTGCg > 2:399394/1‑228 (MQ=21)
ccGGGGAGCTTCACGCCACTCCTCAGAGTTGAAACCGCTACCGGTGGGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAGGACGGTGGCAGTGTGGGGTTCCCG‑CCGGTGCTGGTGCAGAGGCTCGTCCGGGTGGGGAGTGAACT‑C‑AGGGCTGACCGGGGGGTGGAGGAAAGCCGCACCTGGCGGTCACCGGGCGGcccggcc > 1:515278/1‑223 (MQ=11)
ctcccggcacccatagggagGTGAACCCGCCACGGGGGGGCGGGCAAAAACCGGGCTCCGCTGCTGGGCGGAGGCGCTCCTGCTGCGCGGGGGCGAGGAGGGGGGCGGTGGGGGGTGCCCG‑CCGGTGCTGGTGGAGAGGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGTGAGTGAGAAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGc < 1:386665/210‑1 (MQ=2)
cTCATCAGAGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGCTGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCG‑CCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGTGGGTGAGGAAAGCCGCCCCTGGCTGGCATCGTGCGGCCTGACCGGGGAGCAGATGCAAAAc > 2:454809/1‑228 (MQ=255)
cTCATCAGAGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCG‑CCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGGGAAAT‑C‑CTGGCTGACCGGGGGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGCGCAGATGCAAAAc > 2:113341/1‑228 (MQ=25)
atcaGAGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCCGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGCGTTCCCG‑TCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAACT‑C‑CTGTCTGACCGGGTGGGTGGGGCAAACCGCCGCAGGGCGGCATCGCGCCGACCGACCCGGGAGCAGATCCAACACCaa > 1:564144/1‑227 (MQ=11)
agTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGGGTTCCCG‑CCGGTGCTGGGGCAGATGCTCGACCGGCTGGAAAGGGAAAT‑C‑CTGGCTGACCGGGTGGTGGAGGAAAGCCGCCGCTGGCGGGCATGCGGCGGCCTGAACgggggaccaaggcaaaacaaaaagg > 1:164947/1‑206 (MQ=11)
ttGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCG‑CCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTTGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCGGACCGTGGAGAAAAGGAAAAACCAAAAGGAc > 1:187281/1‑227 (MQ=11)
ttGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCG‑CCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGTGAGTGAGGGAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGAc > 2:142871/1‑227 (MQ=18)
ttGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCG‑CCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGAGGAGCAGCTGCAAAACCCGATgggc > 2:395890/1‑225 (MQ=18)
ttGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCG‑CCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGGGAGTGAGGAAAGCCGCCGCTGGCTGGCATCTGGCGGCCTGACCGGGGGGCAGATGAAAAACAAAAGGGAcc > 1:596205/1‑228 (MQ=11)
ttGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCG‑CCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CGGGCTGACCGGGGGAGTGAGGAAAGCCGCCGCTGGCTGGCCTCGGGCGGCCTGCCCGTGGGGCAGATGCAAAACCAAATgggc > 2:380737/1‑225 (MQ=11)
ttGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCG‑CCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGGGAAAT‑C‑CTGGCTGACCGGGTGAGGGAGGAAAGCCGCCGCCGGCTGGCCTCGTGCGGCCCGCACGCGAGGCAGATGCCAAACCAAAGGGaac > 1:566677/1‑226 (MQ=11)
aaaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCG‑CCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGCGAGTGAGGGAAGCCGCCGCTGGCTGGCATCGTGCGTCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCgc > 2:594268/1‑227 (MQ=17)
cTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCG‑CCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGGGAGGGAGGAAAGCCGCCGCTGGCTGGCATCTGGCGGCCTGACCGGGGCGCAGATGCCAAACCCAATGGGCCCGGGGCGCACGCGGgcg > 1:106434/1‑225 (MQ=11)
gCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGCGGCAGTGTGGTGTTCCCG‑CCGGTGCTGGTGCAGAGGCTCGACCGGCTGGCAAGTGAAAT‑C‑CTGGCTGACCCGGCGAGGGAGGGAAGCCGCCGCTGGCCGGCATAGCGCGGCCTGACCGTGGCGCAGATGCAAGACCCGCTGGACCCGCGGTACACGCCGCCGCGaaa > 1:54504/1‑227 (MQ=11)
aGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCG‑CCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGTGAGGGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGGGAAAAATCCACCTg > 2:614281/1‑227 (MQ=14)
ggggCGGATGCGCCTCAGCGGGCCGGGGGGAAAGGCGGGGGGTGTTGGGTCTTCCCG‑CCGGTGCTGGTGCGGATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGGGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGa < 2:106434/225‑1 (MQ=11)
tCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCG‑CCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGGGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCCAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCCCTGGcc > 2:166791/1‑228 (MQ=11)
aggagggTGGCGTTGTGGTGTTCCGG‑CCGGTGCTGGTGCAGATGCCCGCCCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGc < 2:187281/222‑1 (MQ=255)
cgcggtggttgttgtttgtgCCCG‑CTGGTGTGGGTGAAGGTGCGCGGCCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGGGAGTGAGAAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAACCCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCTCCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCaag < 1:395890/212‑1 (MQ=11)
cGGTGGTAGTTGGGTTTCCCCG‑CCGGTGCTGGTGCAGATGCTCGCCCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCaagga < 2:5195/228‑1 (MQ=255)
ggcggggtggtgTCCCCG‑CCGGTGCTGTGGCAGAGGCTCGACCGGCTGGAAAGGAAAAT‑C‑CTGGCTGACCGGGTAAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCaaggaagg < 2:120227/221‑1 (MQ=11)
ggtgttgggtgTTCCCC‑GCGGTGGTGGTGAAGGTGCTGGACGGGGTGAAAAG‑GAAAC‑CTCTGGCTGACCGGGTGGTGGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGa < 1:544000/221‑1 (MQ=11)
gtgtgggtggtccccG‑CCGGTGCTGGTGCAGATGCTCGCCCGGTTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCGGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGa < 2:164947/215‑1 (MQ=255)
gggttgggtcTTCCCG‑CCGGTGCTGGTGCAGATGCTGGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGa < 2:382664/221‑1 (MQ=19)
gagtgggttttccccG‑TCGGTTGTGGGGCAGAGGCTCGCCCGGCTGGAAAGGGAAAT‑C‑CTGGTTCACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGa < 2:377321/215‑1 (MQ=11)
acggggggtgTTCCCGCCCGGTGTGGGTGAAGATGCCGAACCGGCGGAAAAGGAAACT‑C‑CGGGCGGACCGGGGGAGGGAGGAAAGCCGCCGCTGGCGGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGa < 1:423211/222‑1 (MQ=11)
ccg‑ccgGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAACACCAGATGGACCCGGTGTACACGCCGGCGCGAACAATCCACCTGTACCACTGCGCCCATCGCAGCCTGCCGCCGGCCCTTATCAGCAAGGAAGGGACAACAAAATgtgcg > 1:76992/1‑224 (MQ=255)
g‑ccgGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCCCTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATggcggt > 2:423211/1‑223 (MQ=37)
cgtcgtggggggTGCAGAGGCAGGACGGGCTGG‑AAGTGGAATCC‑CGGGGTGTCCGGGTGAGGGAAGAAGGCAGCCGCTGTCGGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCAGCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTgcg < 1:951/218‑1 (MQ=11)
ggcgggttggggtggatggccggACCGGTTGGAATGGGAAAT‑C‑AGGGCTGGCCGGGGGTGTTGGGAACGCCGCCGCGGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCTTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTgcg < 1:619418/205‑1 (MQ=11)
gTGCTGGTGCAGACGCTCGACCGGCTGGAAAGTGAACT‑C‑CTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGa < 2:10243/227‑1 (MQ=37)
tGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGCAAGGCACACAAGAATGGTGCGCGGaag > 2:271816/1‑227 (MQ=255)
tggtccagggggtCGACGGGCGGGAAAGGGAAAT‑C‑CTGGCGGACCGGGTAGGGGAGGAAAGCCGCCGCTGGCTGGCATCGGGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACg < 2:265740/216‑1 (MQ=11)
gATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGCGCAGATGCAAAACCAACTGGACCCGGCGTACACGCCGCCGCGGAAAATCCCCCTGTACCACTCGCACCCTCGCGGCCTCCCGCCGGCCCTTACCACCAAGGAAGGGGCAACAGAATGGTggcccaaagaacaagaacg > 1:1968/1‑210 (MQ=11)
ggtctctgcccgggtgAAAATGTAATCC‑CTGGCGGCCCGGGGGGGTAGGGAAAGCCGCCCGTGGCTGGCATCGGGCGGCCTGACCGTGGGGCCGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCCCTGCGACTATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATg < 1:271816/213‑1 (MQ=11)
gcgggAAAGTGAAAC‑C‑CGGCCGGACGGGGGGGGGGAGGAAAGCCGCCGCTGGCTGGCGTCGTGCGGCCTGACCGTGGAGAAGATGCAAAACCAGATGGACCCGTTGTACACGCCGGCGCGAAAAAGCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACctgc < 1:113341/224‑1 (MQ=11)
tGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGCCACCAGAATGGTGCGCAGAATACGATGAAAGGGGCAACCTGCTGACAGAAGGAAACCCg > 2:332660/1‑227 (MQ=255)
gCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAACCCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGGGCGGAATACGATGAATGGGGCAACCTGCGGAATGAAAAAAAACCGCaa > 1:274762/1‑227 (MQ=255)
gCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGGGTACACGCCGCCGCGAAAAATCCACCTGTACCAATGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCCAGGAAGGGGAAACAGAATGGGGCCCAGAATACGATGAATGGGGCAACCTGCGGCATGCAGAAAACCCggcc > 1:410013/1‑225 (MQ=11)
gACCGGGTGAGTGAGGAAAGCCGCCGCTGACTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCCCGAAAAATCCACCTGTACCACTGCGCCCATCGAGCCCCGCCGCTGGCCCTTATCAGCAAAGACGGGACACAAGAATGGCTCGCAGGATAACGTGACTGGGACAACCCGCCGCACGCAGAGAAACCGCAtaac > 1:541342/1‑225 (MQ=11)
aCCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGACAAATCCACCTGTACCACTGCGCCCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAAGGACGAAAAaccaaaacaac > 1:85378/1‑220 (MQ=11)
|
AACGACAGAACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGAGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCG‑CCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAT‑C‑CTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGC > NC_000913/3765296‑3765734
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
