Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F17 I0 R1
|
52 |
59.5 |
1410130 |
88.0% |
1240914 |
215.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,065,172 |
G→A |
11.6% |
G198G (GGC→GGT) |
yihO ← |
putative sulphoquinovose importer |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,065,172 | 0 | G | A | 11.6%
| 157.4
/ 2.0
| 75 | G198G (GGC→GGT) | yihO | putative sulphoquinovose importer |
| Reads supporting (aligned to +/- strand): ref base G (30/32); new base A (7/2); total (39/36) |
| Fisher's exact test for biased strand distribution p-value = 1.55e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTAATATCATTCAGCACATACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCAAACATC > NC_000913/4064954‑4065394
|
ttaaataatatcacgcaaTACGGGGTGTAAAGAACCTAAACCACAAATTTGACAATAAAGGCCGCCAGGGTAAACAAGTTAACAATGCATAAAACCAGCAATGGCGGATTCCGAAATGCCGTGAAAAATGATTTGAGAATCCTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATCCTCTTTGAAGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATg < 1:248376/211‑1 (MQ=255)
ttAATATCATCCAACACATACTGGGTGTAAAAGACCGTAATCGCCAGTTTGATATAAAATGCCGCCAGGTTACAAAAATTAGCAATGCAAAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATg < 2:701239/228‑1 (MQ=255)
ttCAGCACATACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCTCGCAAAATGATTTGAGAATACTGGCTTTATGTCAGCTTGGCTTTGT‑TACACATTAATGCCTTTTGACG‑CTTTGTAGG‑CCAGCAATCTTAAAAA‑AAAACAGCCAATTGAGGACaaaa > 1:26838/1‑228 (MQ=255)
ttCAGCACATACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCGTTAGC‑ACACC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATa > 2:652447/1‑228 (MQ=255)
cacattccTGGGTTTAAAAGACCTGAACCGCAATTTTAATATAAAATGCCGCCAGGGTAAACAAGTTAGCAAGGCATAAAACAAGAAATGGCGGATGCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTg < 1:24096/221‑1 (MQ=255)
cacaTACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGGTTCCAAA‑TAATGCTCTTTGACGCCTCTTGAGC‑CCGGC‑ATCTTAAAAATAAAACCACCAATGGCGAACATAAATGc > 1:522166/1‑228 (MQ=255)
gggTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAgg > 2:485269/1‑228 (MQ=255)
taaaaggcccTGAAACGCCAGGTTGATAGTAAATGCCGACAGGGTAAACAAGTTAGCAATGCAAAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTGGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATa < 2:193512/220‑1 (MQ=255)
tAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTTAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATACTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCCTAAAAATAAAGCCGCCAATGGAGAACATAAGGACCGCACAGGCCTaa > 2:11677/1‑228 (MQ=255)
cTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTAGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCCCTTTGACGCTCCTGTAGA‑ACAGC‑ATCATCAAAATAAAACCGCCAATGCGTACCATAAGTACCACACAGCCAAAACCAAcaga > 1:314696/1‑225 (MQ=255)
aaTCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATAACGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGCCGTTGTGACCACA‑TAATGCTCTTTGACGCCTCTTTAGC‑CAAGC‑ATCAATAAAATAAACCCGCCAATGGAGAACATAAATGCCTCACAgaaacaaacaaaagatag > 1:311860/1‑211 (MQ=255)
tttGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGga > 2:56205/1‑183 (MQ=255)
ttaaaaTGCCGCGAGGTGAACCATTTTAGCAACGAAAAAACCAAGCAAGGGATGTTCCCGAAATGTCGCGAAAATTGATTTGATCATACTGGTTTGAGGCCCGATTGGCGTTGTACCCACA‑TAATGCTCTGTGACGCCGCTGTAGC‑ACGGA‑ATGAAAAAAATAAAGCCGCCAATGGAGAACAGAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGa < 1:11677/225‑1 (MQ=255)
atTAAATGCCGCCAGGGTTAACAAGTTAGAAAGGCATAAAACCAGCAATGGCGGATCCCGAAATATCGCACAAAATGATTTGAGAATACTGGCTTTATGTGCGGTTGGGGTTGTGACCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ACCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGa < 2:331562/228‑1 (MQ=255)
ccAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGGCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTTACGCCTCTGTAGG‑CCAGC‑ATCCTAACACTAAAACCGCCAATGGGGAACATAAGTGCCGCACAGCCATAACAGAAGGTTGCACAAGAAAAAAGCGAcgccaaacaaa > 1:331562/1‑218 (MQ=255)
ccAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACCTGCTTTATGCCCGGTTGGCGTTGTGACCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAACCGCCAATGGAGAACATAAGGGCCGAACAGCCATAACCGACGCTTACATCGGAAAAAAGCAAcggaaaacgaa > 1:445207/1‑218 (MQ=255)
ggtaacaaaGTTAGAAATTCATAAAACCATCAATGGCGGTTTCCGAAATGTCGGGCAAAATGATTTGAGAATACTGGTTTTATGTCCGGTTGGCGTTGGGTCCACA‑TAATGCTCTTTGACGCCTCTGAAGC‑ACAGC‑ATCATAAAAAAAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATaaa < 1:652447/221‑1 (MQ=255)
acaATTTAGAAATGCATAAAACCAGCATTGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCa < 2:522166/228‑1 (MQ=255)
acaAGTTAGAAATGCTTTAAACCAGCAAGGGCTGTTTCCGAAGTTTCGAGGAAAATGATTTGAGAATCCGGGCCTTATGTCCGGTTGGAGTTGTGACCAAA‑AAATGCCCTTTGGCGCCTCTGTAGC‑ACAGC‑ATCAAAAAAAAAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCa < 1:217449/228‑1 (MQ=255)
aataagagtaaggCATAAAACCGACAATGGCGAGTTCCGAAATGTCGCGAAAAATGATTGTAAAAGACAGGCTTTAGGTCCGGTTGGCTTTGTGTCAGCA‑TAATGCTTTTTGACGCCCCTGAAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCa < 2:163547/215‑1 (MQ=255)
ttAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCCCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGAATGGAAAGGAGTAAAGGCCACggg > 2:430861/1‑226 (MQ=255)
aGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTAc > 2:546369/1‑227 (MQ=255)
tGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGACCATAAGTGCCGCACAGGACTAACCGACGGTTCAGTCAGAAAAAAGCGACTGCAAAGGAAAAAAACCCACGGGAAAAAtaa > 1:605594/1‑226 (MQ=255)
tGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATAATGGCTTTATGTCCAGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGTAGAACATAAGTGCCGCACAGGCAAAACCAACGACGCAGTAGGAAAAAAGCAATTGCACCGAAAAAAACACCACGGAAAAAACCa > 1:302770/1‑228 (MQ=255)
tGCATAAAACCAGAAATGGCGGATTCCGAAATATCGCGCAAAATGATTTAAGAATACTGGCTTTATGGCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAAGCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGTAAAAAACGAACGCAACGGAATAAACGCACCGGTAAAAAACa > 2:660740/1‑228 (MQ=255)
gCATAAAACCAGAAAGGGGGGATTCCGAAATAGCGCGAAAAATGATTTGAGAATACTGGTTTTATGCCCGGTTGGAGTTGTGCCCACA‑TAATGCTCTTTGACGCCTCTGGAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCaa < 2:314696/228‑1 (MQ=255)
cATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑CCAGC‑ATCATCAAACTAAAGCCGCCAATGGAGACCATACGGACCGGACAGGCATAACCGACGGATGAGTCCGGAAAAAGCGACTGCAACGCAATAAACACCCCGGGAAAAACCAAt > 1:38197/1‑228 (MQ=255)
cATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAAt > 2:222383/1‑228 (MQ=255)
gCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTTGCTTTATGTCCGGTTGGCGTTGTGTCCAAA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAACCGCCAATGGAGAACCTAAGTGCCCGACAGGCCTAAACGACGCCTGAGTCAGAAAAAAGAGACTGAAACGGAATAAACCCCACGGTACAAAACacgtatcttataa > 1:163547/1‑216 (MQ=255)
gCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAACAATAAAGCCGCCATTGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAACGACTGCAACGAAATAAACACCAAGGTGCAAATCCATAAcccgaagg > 1:549320/1‑223 (MQ=255)
ttCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCaccacc > 2:421968/1‑227 (MQ=255)
cgcgCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTCGC‑ACCGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAACAGCGACTGCAACGGAATAAACGCCACGGTACAAAACAATACCCCTATGGTAGCACCCCCCTGGCgtgagt > 2:695573/1‑222 (MQ=255)
cgcgCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAATCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGCCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAAAAGCCCAATGGTTACACACACCTGCAGGTAAg > 1:443082/1‑227 (MQ=255)
aTTTGAAAATGCTGGCTTTATGTCCGGTTGGGGTTGTGTCCACA‑AAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTgcg < 2:490876/228‑1 (MQ=255)
ttGAAAATTCTGGTTTTATCTGCGTGTGGCGTTGTACACAAA‑GTATCCTATTAGGCCCCTATGAAGCAACAGC‑AT‑AAAAAAAAAAAGCTGCCAATGGAGAAAATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCCCCACCCTGGCGGTAAGCCGCGAGCTgcgcg < 1:490468/228‑1 (MQ=255)
cccGGTTGGCGTGGTGTACACA‑TAATGCCCTTTGACGCCTCTGTAGC‑CAAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACAAAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGt < 2:605594/227‑1 (MQ=255)
cGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGCCGGAAAGCCGCAAGCTCCCGGGGCCCAATCGGGGTTTTGGTaa > 1:109074/1‑228 (MQ=255)
cGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACAAACCTGGCGGTAAGCCGCGACCTGCCGGCCCTCATTCGGGTTTTTGGTaa > 2:598562/1‑228 (MQ=255)
cGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTCGAGTCAGAAAAAAGCGCCTGCACCGGAATAAAAGCCCCGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGCAAGCCGCGAGCTGACCGCACTCCTTCGGGGTTTTGGGaa > 1:419815/1‑228 (MQ=255)
cGGGTGGCGTTGGCACAAAA‑TAATGCTTGTTGGAGCCTCTGGAGC‑ACAGC‑AACAAAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCAAAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTaa < 1:485269/228‑1 (MQ=255)
gTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAAt > 2:347518/1‑227 (MQ=255)
caca‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCAAAGGCATAACCAACGGTTGAGACAGACAAAAGCGACTGCAACGGATTAAAAGCCACAGACAAAATCAAAAACCCTATGGGTGAACAACCCAGGAGGAAAGCGCCAACCAGCACCCCCCCATCCGGGGTTTGGGTAATTGCCAGGACCATAGc > 1:45562/1‑228 (MQ=255)
aaaaataatgcatggagACGCCCTTGTACC‑ACAGA‑AACAAAAAAATAAGGCCGCCAATGGAAAAAATAAGGGCCGAACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAAGCAATAGCCCTATGGTTGCTCCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCg < 1:678992/212‑1 (MQ=255)
aca‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCTCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGatcat < 2:45562/224‑1 (MQ=255)
gCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACg > 2:284876/1‑125 (MQ=255)
ttttggcggCCGCTGAAGC‑AAAGC‑AAAAAAAAAAAAAAGCGGCCAAGGGAAAACAAAAGTGCCGGACAGGCAAAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAg < 1:347518/220‑1 (MQ=255)
tctTGGACGCCTCTGTAGA‑ACAGC‑ATAATAAAAATAAAGCCTCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCGCCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAg < 2:311860/228‑1 (MQ=255)
ctTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGAAATTGCCGGGATCATCGCACCATACGac > 2:114976/1‑226 (MQ=255)
tttGGCGCCTTGTTAGC‑ACATA‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCa < 2:445207/228‑1 (MQ=255)
tttGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGGCCGCGCTCCTTCGGGCTTTTGGTAATTGCCGGGATCATCGCACCATACGAGc > 2:678992/1‑227 (MQ=255)
ttggACGCCTCTGTAGC‑ACAGC‑ATCATAAAAAAAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCa < 2:109074/225‑1 (MQ=255)
aagagagagctagagc‑acagc‑acAAAAAAAAGAAAGCCGCCAAGGGAAAACAAAAGGGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCa < 1:170891/214‑1 (MQ=255)
ggACGCCTCTGAAGC‑ACAGA‑ATAATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCa < 2:594253/225‑1 (MQ=255)
gACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGAGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGACAGCCGCGACCACCACCCGCTCATTCGGGTTTTTGGTAATTGCCGGGGTCATCCCCCCCAACGAGCAGtt > 1:594253/1‑228 (MQ=255)
ctcagtagacaaGC‑AACAAAAAAAAAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTtcatca < 2:26838/217‑1 (MQ=255)
tttttgacgcccaaattaaaaaaaaaaCCCCGCAAATGGAAAAGATAAGTGCCGCACAGGCATACCCGACGGTTGAGTCAGAAACAAGCGACTGCAACGGAATAAACGCCACGGTACAACTCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGTGATTACCCCACCATTCGAGCATTtcatca < 1:430861/209‑1 (MQ=255)
ctGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTtcatcaa > 2:421347/1‑226 (MQ=255)
ctGTAGC‑AAAGC‑AGCAAAAAAATAAGGCCGCCAATGGAGAACATAAGTGCCGCACAGGCAGAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGa < 2:555650/228‑1 (MQ=255)
cgtgtgagccatgaaaaaaaaaaaaaaGGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGTTTGAGTCAGAAAAACGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTtcatca < 1:222383/209‑1 (MQ=255)
tgtgtgccagaaaacaaaaaaaaaaAGCCGCCAAAGGAAAACACAAGGTCCGCACAGGCATAACCGACGGTGGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATCCGAGCAGTTCATCAGa < 1:452606/211‑1 (MQ=255)
caGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGGAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGa > 2:494195/1‑228 (MQ=255)
ccagaacatAAAAAAAAATCCGCCAATGGAGAACATAAGTTCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGa < 2:167684/222‑1 (MQ=255)
aGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCACCGGAATAAACGCCACGGTACAAATCAATAGCCCTATCGTTGCACCACCCCGGCGGTAAGCCGCGAGCTGAGCCCGCTCATTCGGGTTTTGGGTATTTGCCGGGGTCATCGCCCCATACGACCAGTGCCTCAg > 1:555650/1‑218 (MQ=255)
c‑atcatAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGGGCAGTTCATCAGACGGTATGAAAg > 2:294824/1‑228 (MQ=255)
c‑atcatAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGc > 2:170891/1‑206 (MQ=255)
tAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCAGCGCGCCGTCATTCGGGGATTCGGTAATTGCCGGGATCATCGCACCATCCCAGCAGTTCATCAGCCTGTCTGAAAGTCCaa > 1:167684/1‑228 (MQ=255)
tAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGGTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCCCATTCGGGTTTTTGGTAATTGCCGGGATCCTCGCACCAAAAGCGCAGTTTATCAGACTGAATGAAAAGCCaa > 1:88319/1‑228 (MQ=255)
tAAAAATAAAGCCGCCAATGGAGAAAATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGAGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACACAGGCGGTAAGCCGCGAGCCACGCGCGCTCCTTCGGGTTTTTGGGAATTGCCGGGATCATCGCACCATACGCACAGTTCATACAACTGGATGCAAGTCCaa > 1:162900/1‑228 (MQ=255)
tAAAAAAAAGACCGCCAATGGAAAAAAGAAGGGCCGCACAGGCATAACCGCCGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATCAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCTCCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCaa < 1:294824/228‑1 (MQ=255)
aaaaaaaaaAGCCGACAAAGGAGAACATAAGGGGCGCCCAGGCATAACCGACGGTTGAGTCAAAAAAAAGCGACGGCCACGGAATAAACGGCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCaa < 1:421968/227‑1 (MQ=255)
aaaaaaTAAAGCCGGCAATGGAAAAAAAAAGTGCCGCACAGGCATAACCGTCGGGTGAGACAGAAAAAAGCGACTGCAACGGAATTAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCaa < 1:598562/227‑1 (MQ=255)
aaaaaaaaGCCGACAATGGAAAACAAAAGGGCCGCACAGGGCTAACCGACGGTTGAGTCAGAAAAACGCGACTGCAACGGAATAAACGCCAAGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCaa < 1:146193/226‑1 (MQ=255)
aaaaaaaaACCGCCAATGGAAAACAACAGGGCCACACAGGCATAACCGACGGTTGAGTCCGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTTTGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCaa < 1:695573/226‑1 (MQ=255)
aaaaTAAAGCCGGCAATGGACAACATAAGTGCCCGACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCGCCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCaa < 2:302770/226‑1 (MQ=255)
caaGCCGCCAAGGGTGAACATAAGTCCCGCACAGTCATAACCGACGGTTGAGTCAGAAAAAGGCGACTGCAACGGAATTAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCAAAcatc < 2:666998/225‑1 (MQ=255)
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TTAATATCATTCAGCACATACTGGGTGTAATAGACCTGAATCGCCAGTTTGATATTAAATGCCGCCAGGGTACACAAGTTAGCAATGCATAAAACCAGCAATGGCGGATTCCGAAATATCGCGCAAAATGATTTGAGAATACTGGCTTTATGTCCGGTTGGCGTTGTGTCCACA‑TAATGCTCTTTGACGCCTCTGTAGC‑ACAGC‑ATCATAAAAATAAAGCCGCCAATGGAGAACATAAGTGCCGCACAGGCATAACCGACGGTTGAGTCAGAAAAAAGCGACTGCAACGGAATAAACGCCACGGTACAAATCAATAGCCCTATGGTTGCACCACCCTGGCGGTAAGCCGCGAGCTGCGCGCGCTCATTCGGGTTTTTGGTAATTGCCGGGATCATCGCACCATACGAGCAGTTCATCAGACTGTATGAAAGTCCAAACATC > NC_000913/4064954‑4065394
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
