Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F3 I0 R1 54 170.2 2993358 97.8% 2927504 270.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,326,089 T→G 8.6% intergenic (‑347/+311) yjdN ← / ← yjdM metalloprotein superfamily protein/zinc‑ribbon family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,326,0890TG 8.6% 188.1 / 8.0 86intergenic (‑347/+311)yjdN/yjdMmetalloprotein superfamily protein/zinc‑ribbon family protein
Reads supporting (aligned to +/- strand):  ref base T (32/41);  new base G (4/6);  total (39/47)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGC  >  NC_000913/4325802‑4326369
                                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                         
agGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCCTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTCCGGAGGGTTCGGGCATTTGTCGGCCTGAAAAGACGCGCAAGCCGCGCCTCCGGCA‑GTCGGCCCCGTTGCCGGATGCGGCGGAAAACGCTTATCCGCGCTACGGGTg                                                                                                                                                                                                                                                                                          >  2:1361078/1‑289 (MQ=11)
       cggtgaagaaacgggAGCGTAGCATGAGGCGGCCGGCACTGTGGCCGGATGAGGCGTAAACGCCTTATCCGGCGTAAGGAGGGTGCGGAAATTTGGAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCggg                                                                                                                                                                                                                                                                                   <  2:104484/275‑1 (MQ=11)
                cgcgcgAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt                                                                                                                                                                                                                                                                            <  1:1013320/287‑1 (MQ=25)
                cgcgcgAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAGTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGCTGCGGCGTAAACGCCTTATCCGGCCGACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCA‑CGCGCACGCCGCGCCCGTTGCCCGATGCGGGGCAAACCCACTATCCGGCCCCTGGAGCGCGCGGGTAGTTGTAg                                                                                                                                                                                                                                                                          >  2:847559/1‑289 (MQ=11)
                   gcgAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGc                                                                                                                                                                                                                                                                        <  1:606594/288‑1 (MQ=38)
                    tgAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGGTGCCGGAGGCGGCGTAAACGCCTTATCCGGCCTACGGGTGGGGCGGGAAATTGTAgg                                                                                                                                                                                                                                                                         >  1:463414/2‑286 (MQ=255)
                    cgAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCCTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGACGGTGCGGGAATTTGTCGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA‑GACGGCCCCGTTGCCGGTGGCGGCGTAAACGCCTTATCCGGCCTGCGGAGGGGTCGGGAATTTTTAgg                                                                                                                                                                                                                                                                         >  2:1404909/1‑286 (MQ=11)
                    cgAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCACGCGTCGCATCAGGCA‑GTCGGCCCTGTTGCCGGATGCGGCGTAAAAGCCTTATCCGGCCTACGGCAGGTGCCGGCACTTGTTgg                                                                                                                                                                                                                                                                         >  2:206845/1‑286 (MQ=11)
                    cgAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAgg                                                                                                                                                                                                                                                                         >  1:965908/1‑286 (MQ=38)
                           ggaaacgtgCAGTGGGCACGGTTGCGGAATAGGGCGTAAACGCCGTATCCGGCCTACGGGGGGTGCGAGAATTTGTAGGCCTGATAGG‑ACGCGCATGCGGCGCATCAGGCGGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTGATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGGGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑Ag                                                                                                                                                                                                                                                               <  2:516536/280‑1 (MQ=11)
                                 ggggagcgggCACGGTTGCCGGGTGCGGCGTAAGCGCCTTGTGCGGTCTAGGGTGGGGGCGGGAATGGGGAGGCCGGATAAG‑ACGGGCAAGCGTGGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACgcgc                                                                                                                                                                                                                                                         <  2:504035/280‑1 (MQ=11)
                                 aGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGGAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGCCGCACCAGGCC‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATCCGGCCGGTGCGGGTACATGTGGGGCTGGTA‑AGACGCGCa                                                                                                                                                                                                                                                        >  2:252339/1‑289 (MQ=11)
                                     acgcggcacgtgtGCCGGATGAGGCGTAAACGCCTGATCCGGCCTCCGAGGGGTGCGGGAATGTGTAGGCCTGGTAAG‑ACGCGCAAGCGGCTCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTTCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCg                                                                                                                                                                                                                                                    <  2:1477835/277‑1 (MQ=11)
                                        cGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTc                                                                                                                                                                                                                                                  <  2:965908/288‑1 (MQ=37)
                                               gTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAg                                                                                                                                                                                                                                           <  2:1341736/288‑1 (MQ=14)
                                                    cGGATGCGGGGTGAACGCCTGATGCGGGCTACGGAGGGTGCGGGAATTTGGAGGCCTGGTAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGt                                                                                                                                                                                                                                      <  2:559169/288‑1 (MQ=255)
                                                       aTGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTgg                                                                                                                                                                                                                                   <  1:39554/288‑1 (MQ=37)
                                                        tGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCa                                                                                                                                                                                                                                 <  1:537954/289‑1 (MQ=37)
                                                         ggggcgTAAACGCCTTATGCGGGGTAGGGAGGGTGGGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGGGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCa                                                                                                                                                                                                                                 <  2:1151908/286‑1 (MQ=255)
                                                              gTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGtt                                                                                                                                                                                                                            <  1:55043/288‑1 (MQ=38)
                                                              gTAAACGACTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGtt                                                                                                                                                                                                                            <  1:1361078/288‑1 (MQ=38)
                                                                      cttatactgacaaCGGAGGTTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGGACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGAtaa                                                                                                                                                                                                                   <  1:1463505/277‑3 (MQ=255)
                                                                      cTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGGCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTTATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGAtaa                                                                                                                                                                                                                   <  1:151556/289‑3 (MQ=255)
                                                                            cggtgtagggAGGGGGGGGGGAGTGGTAGGCCTGATAGA‑GCGCGAAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGGTGCGGGGTAAACGCCTTATCCGGCCTAGGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTa                                                                                                                                                                                                             <  2:562914/281‑1 (MQ=11)
                                                                            cGGCCTGCGGAGGAGGCGGGAATTTGTAGGCCGGATAAG‑ACGCGCAAGCGTCGCAGCAGGCAGTCGGCACCATGGCCGGATGCGGCGTAAACGCCTGATCCGGCCGACGGAGTGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTa                                                                                                                                                                                                             <  2:523138/289‑1 (MQ=11)
                                                                                  aCGGAGGGGGCGGGAATTTGTAGGCCGGATAGG‑ACGGGCAAGCGTCGCATCGGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTAGCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGc                                                                                                                                                                                                        <  2:1394551/288‑1 (MQ=255)
                                                                                       gggggacgggaTTTGTAGGCCTG‑TAAGAACAGGGCAGCGTCGCATTAGGCAGTGGGCACCGTTGGCAGATGGGGGATAAACCCCTTATCCGGCCTATGGAGGGTGCGGGAATATGTAGGCCGGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTAt                                                                                                                                                                                                   <  2:238831/278‑1 (MQ=11)
                                                                                       gggTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTAt                                                                                                                                                                                                   <  1:68463/288‑1 (MQ=38)
                                                                                        ggTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAACGTCGCATCAGGCA‑GTTGGCACTGTTGCCGGAAGCGGCGCAAACGACTTATCCGGGCTACGGAGGGTACGGCAATTTGTAGGCCTGATA‑ATACGCGCAATCGTCCTATCAGGCAGTTGGCACTTATTCCGGATtcgtgcaaaaacccttaacc                                                                                                                                                                                                 >  2:587193/1‑272 (MQ=11)
                                                                                        ggTGCGGGAATTGGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATc                                                                                                                                                                                                  <  1:1364589/288‑1 (MQ=38)
                                                                                         gTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCATTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGGTGATTAAGGCAGTTGGCAATCTTGACGGATGCGGCGGAAACGCCTTATCCg                                                                                                                                                                                                >  1:237197/1‑289 (MQ=11)
                                                                                            ggggggaatGTAGGCATGAGTAG‑AGGCGCAAGCGTGGATTCAGTGATGCGACACCATTGCCGAATGCGGCGTGAACGCATAGTACGTCCTACAGAGGGGAGGGGAATTTGTAGGACTGATAAGACGCGGAGGCGTCGCATCAGGCA‑GTCGGCACCGGTGGCGGATGCGGCGTAAACGCCTTATCAGGCCTACGGATGGTGCGGGAAGTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGc                                                                                                                                                                                              <  2:762969/280‑1 (MQ=11)
                                                                                            cGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGACCGATCAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGGAAACGCCTTATTCGGCCTCAGGACGGGGCGGGAATTTGGTGGTCTGACACACAC‑CGACAGCGTCGCATCCGGCAGTTTGTCCTGTCGGCGGGAGCGGCGttatacgctctcgcgga                                                                                                                                                                                              >  2:764108/1‑272 (MQ=11)
                                                                                                         gCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGGGCGGGCATTTGTAGGCCTGATA‑AAACGCGCAGGCGTCGCATCAGGGCGTTGTCACCGTTGCCGGATGCGGCGCAAAACCCTTATCCGCCCCACGGAGGGTGCg                                                                                                                                                                                >  2:190199/1‑289 (MQ=11)
                                                                                                            gcgtatg‑ACGCGCACGCGTCGCATCAGGCATTCGGCTCCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGCCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGa                                                                                                                                                                             <  1:823855/283‑1 (MQ=255)
                                                                                                                        gcAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCCGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGACTTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTTGGCACCGTTGCCGGACGCGGCGTAAACCCCTTATCCGGCCTACGGATGGGTGGGGAATTTGTAGGCTCGCTA‑AGACGCGCCATCCTCCCATCCGGCAGCTGGCCCGTTTGACGGGCGGGGGGCAAACGGCTTCTACGGGCTACGGGGGGTGCGGGCAATTGTacgt                                                                                                                                                                   >  2:611713/1‑285 (MQ=11)
                                                                                                                         cAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAgg                                                                                                                                                                    >  1:288311/1‑286 (MQ=38)
                                                                                                                                         cAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGTCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATGCGAcgcttg                                                                                                                                                    <  1:483370/286‑4 (MQ=255)
                                                                                                                                                  ccATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAg                                                                                                                                                                                                                                                                          >  2:184954/1‑160 (MQ=33)
                                                                                                                                                    aTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGCATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTTGCACTGTTGCCGGACGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGCATTTGTAGGCCTGATAAGACGCTCACGCGTCGCATccg                                                                                                                                       >  1:429635/1‑286 (MQ=255)
                                                                                                                                                          ggATGCGGCGT‑AACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGCATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTTGCACTGTTGCCGGATGCGGCCTAAACGCCTTCTCCGGCCTACGGAGGGTGCGGGAATTTGTGGGCCTGATAAGCCGCGCAGGCGTCGCCCCAGGCAGGCg                                                                                                                                >  2:106665/1‑288 (MQ=11)
                                                                                                                                                             tGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACCGTTGCCGGa                                                                                                                                                                                                                      <  2:641617/200‑1 (MQ=18)
                                                                                                                                                                              aTCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTTGCCCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGCGCGGGAATTTGTAGGCCTGATAACACGCGCAAGCGTCGCAACCGGGAGCCGGCACCGTTGcctgctgacgc                                                                                                            >  2:123886/1‑280 (MQ=11)
                                                                                                                                                                                   ggcgccGGGGGGTGGGGGGATGTGGAGGCGTGATAAGACGCGGAAGGGTGGCATCAGGCA‑GTGGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTGGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTaa                                                                                                        <  2:1026693/283‑1 (MQ=11)
                                                                                                                                                                                       gaggAGGGTGCAGAAATTGGTGGGCGTGTAAAGAAGCGCAAGTCTGGCCTCAGGCA‑GTTGGCGCCGTGGCCGGATGGGGCGTAAACGCCTTATCCGGCGTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGc                                                                                                    <  2:1342662/286‑1 (MQ=11)
                                                                                                                                                                                             ggTTCGGGAATTTGTAGGCCTGATAGGACGCGCAAGCGTCGCTTCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTGATCGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCGCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAGTTGTAGGCCTGATAAGACGCGCAAACGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATc                                                                                              <  1:404492/288‑1 (MQ=255)
                                                                                                                                                                                             ggTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCCGGCAGTCGGCACCGTTGGCGGATGCGGCGTAAACGCCTTATcc                                                                                             >  1:536373/1‑289 (MQ=38)
                                                                                                                                                                                                gCGGGAATTTGTAGGCCCGAGGACACGCGCAAGCGTCGACTCATGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTGATCCGGCCTACGGATGGTGCGGGAATTGGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCATTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCgg                                                                                           <  2:1387737/288‑1 (MQ=11)
                                                                                                                                                                                                   ggAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt                                                                                        >  1:1341736/1‑288 (MQ=9)
                                                                                                                                                                                                         tGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGAGGCGGCGTAAACGCCTTATCCGGCCTACGGAgg                                                                                 >  1:1067102/1‑289 (MQ=38)
                                                                                                                                                                                                         tGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGGTGGCCCTGTTGCCGGATGCGGCGGAAACGCCTTATCCGGCCTACGGCGGGTGCGGGAAGTTGTCGGCCTGATAATACGCGCAAGCGCTGCACCAGGCAGCCGGCACCCTTGCTGGATGCGGCGGAAACGGCTTATCCTGCCTAcggcgg                                                                                 >  2:419808/1‑289 (MQ=11)
                                                                                                                                                                                                              gCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAgg                                                                                                                                                                                                                                          <  2:136131/131‑1 (MQ=32)
                                                                                                                                                                                                                 tGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGa                                                                         <  1:595001/289‑1 (MQ=38)
                                                                                                                                                                                                                   aTAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGa                                                                                                                                                                                       <  2:1244406/177‑1 (MQ=38)
                                                                                                                                                                                                                   aTAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGCCAACGCCTTATCCGGCCTACGGAGGGTCCGGGGATTGGTAGGGCTGCTAAGACGCGCAAGCGTCCACACAGGGCGGAGGCCCCGTTGCCGTGGGCGGCGTAGACGCCTCATGCTGCCTACGGAGGGGGCcgggcg                                                                       >  2:475760/1‑286 (MQ=11)
                                                                                                                                                                                                                   aTAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCCCATCAGGCAGTTGGCACTGTTGCCGGATGCAGCGTAAATTACTTATCCGGCCTACGGAGGCAGCGGGACTGTGGAAGTCTGCTCAGTCGCGCCAGCGTCGCATCAGGCATTCGGCACCGTTGCCGGAGTCGGCGTACGCGCCTTCTCCGGCCTACCGAGcgcgcgcgg                                                                         >  2:1445734/1‑284 (MQ=11)
                                                                                                                                                                                                                     aaGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGt                                                                                                                                                                                                                                                                            <  2:1387969/91‑1 (MQ=33)
                                                                                                                                                                                                                         cgcgCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAg                                                                                                                                                                                                                                           <  1:389350/119‑1 (MQ=32)
                                                                                                                                                                                                                             cAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGa                                                                                                                                                                             >  1:1244406/1‑177 (MQ=39)
                                                                                                                                                                                                                             cAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAgg                                                                >  1:722267/1‑286 (MQ=25)
                                                                                                                                                                                                                                 cGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCg                                                                                                                                                                                                                                                    >  2:89507/1‑102 (MQ=32)
                                                                                                                                                                                                                                  gTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATa                                                         <  2:288311/288‑1 (MQ=37)
                                                                                                                                                                                                                                     ttaTCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGGAGGCCTGATAAGACGCGCCAGCGTCGCCTACCGGAGTTGGCACCGTTGCCGGAGCGGGCGTCATCGCCTTATCCGGCCTCAGGAGGGTGCCGAGATGTGTAGGACAGAtgatac                                                     >  2:582262/3‑284 (MQ=11)
                                                                                                                                                                                                                                          aGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATc                                                                                                                                                                                                                                             <  1:1332601/100‑1 (MQ=33)
                                                                                                                                                                                                                                              a‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGGAGTCGGCACCGTTGCCGGGTTCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGGATTTTGTGGCCTGATCAGGCGCGCaa                                               >  2:966595/1‑286 (MQ=255)
                                                                                                                                                                                                                                                       ccGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAg                                                                                                                                                                     <  1:184954/160‑1 (MQ=14)
                                                                                                                                                                                                                                                        cGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTAt                                                                                                                                                                                                   <  1:341672/129‑1 (MQ=39)
                                                                                                                                                                                                                                                         gtggcgggATGCGGCGGAGACGCCTTATCCGGCCTACGGAGGGTGAGGGAAGTTGTTGGCCTGATA‑AGACGCGCAAGCGTCGAATCAGGCAGTTGGCGCGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAg                                   <  2:430308/282‑1 (MQ=11)
                                                                                                                                                                                                                                                          ttGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCTTCCGGCAGTCGGCACCGTTGCCGGATGCGGCCTAAACGCCTTATCCCGCCTACGGAGGGTGCTGGAACTTGTAGGCCTGATACAACGCGGAAGCGGCGCACCACGc                                 >  2:838375/1‑289 (MQ=11)
                                                                                                                                                                                                                                                           tGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCa                                <  1:849807/289‑1 (MQ=35)
                                                                                                                                                                                                                                                                 aTGCGGCGTAAACGCCTTATCCGGCCTAGGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTgg                           <  1:1404909/288‑1 (MQ=38)
                                                                                                                                                                                                                                                                  tGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACg                                                                                                                                                                                         >  2:341672/1‑129 (MQ=38)
                                                                                                                                                                                                                                                                  tGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTCCGGAGGGTGCGGGAATTTGTGGGCCTGAGAAACCGCCCAATCGTCGCATCCGGCctcttcc                          >  2:982729/1‑285 (MQ=11)
                                                                                                                                                                                                                                                                   gcggcgTAAACGCCTTGTCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGGGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCa                         <  2:722267/288‑1 (MQ=9)
                                                                                                                                                                                                                                                                       cgTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCGGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACGGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGcctacaaattccc                     <  1:1018725/288‑13 (MQ=255)
                                                                                                                                                                                                                                                                           aaCGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATACGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTATGCCTGATAAGCCGCGCACGCGTCCCACCCGGCATCTGGCACCGTTGTCg                >  1:917513/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                   aTCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCACCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTCCGGAGGGTGCGGGAATTTGTAGGCCTGATCAGACGCGGAAGCGGCGCCGCAGGCATCTGGCACCGTCGCCGGCTgcggc        >  1:614731/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                   aTCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGGGCGGGAATTTGTAGGCCTGATAAGACGCGGAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGGAAACGCCTTATCCCGCCTACGGAGGGGGCGGGAATTCGTAGTCATGCTACGACACGTCATCGTCCCATCAGGCATcgtctaccgtttgcgggtcggg         >  2:890596/1‑267 (MQ=11)
                                                                                                                                                                                                                                                                                   aTCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCCGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGTATTTGTAGTCCTGCTAAGACGCCCAAGCGTCGCATCAGGCATCTTGCACCGTTGCCAGagtgtcg        >  1:1288354/1‑283 (MQ=255)
                                                                                                                                                                                                                                                                                       gtccTACGGAGGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGa    <  1:475760/287‑1 (MQ=38)
                                                                                                                                                                                                                                                                                       ggCCTACGGAGGGTGCGTGAATTTGTAGGCCTGATA‑AGCCGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGa    <  1:587193/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                        gcgtACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCCTCTGGCAGTGGGCAGTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGGCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGa    <  2:722203/285‑1 (MQ=255)
                                                                                                                                                                                                                                                                                        gCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCTTGATAAGACGCGCAAGCGTCCCATCACGCAGCTGGCACCGTTGCCGGacccgcccgca    >  2:181888/1‑278 (MQ=255)
                                                                                                                                                                                                                                                                                         ccTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTCCGGAGGGAGCGGGAATTTGTAGGCCTGATAAGACGCGCAACCGTCGCATCTGGCAGTCGGCACCGTTGCCGGAGGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGGATTTGTAGGCCTGATAAGACGCGCAAGCGTCTCATCAGGCATCCTGCACCCTCGCCGCATGCGGCGCCAgc  >  1:767445/1‑289 (MQ=14)
                                                                                                                                                                                                                                                                                         ccTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGGAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTTTCCGGCCTACGGAGGGTGCGGGTATTTGTAGGTCCGACAAGACGCCCACGCGCGCCCTACGGCATCTGGCACCGGTGCCGGATgagggccggg   >  2:115941/1‑282 (MQ=14)
                                                                                                                                                                                                                                                                                          cTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTTCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGGGCGGGAATTTGTAGGCCTGACACGACCCGCAACCGTCCCCTCAGGCATCTGGCACCGTTGCCGGCTGGGGGgcgcgc  >  2:665693/1‑288 (MQ=14)
                                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                         
AGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAG‑ACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA‑GTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTAGGCCTGATA‑AGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGC  >  NC_000913/4325802‑4326369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A